>PIVA2_ADECT (P87552) Maturation protein (Protein IVA2)|
          Length = 446

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 207 HERTPARSILHSHVEQGNKQPSSISGPSPAC 299
           H+R   R+  HS     NK+  ++ G +PAC
Sbjct: 22  HQRAGPRATFHSDRNHPNKEAEAMEGQNPAC 52

>GLE1_MOUSE (Q8R322) Nucleoporin GLE1 (GLE1-like protein)|
          Length = 699

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 177 LTKSKQEFTKHERTPARSILHSHVEQGNKQPSSISGPSPA 296
           +T++ Q   KHE         S V+QG   P+  S PSP+
Sbjct: 331 ITRASQVKKKHEEEAKVKRQESQVQQGPAPPTQTSAPSPS 370

>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 355

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 63  KYNDQIQSDINAHTFCHRKEEEK-STHVHHTT*PLHIMNLTKSKQEFTKHERTPARSILH 239
           +++D  Q     H   H++++++   H HH        +  + KQ+F  H +   +   H
Sbjct: 199 QFHDHQQQQQQFHDHHHQQQQQQFHDHHHHQQQQQQFHDHHQQKQQFHDHHQQQQQQQFH 258

Query: 240 SHVEQ 254
            H +Q
Sbjct: 259 DHPQQ 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,968,859
Number of Sequences: 219361
Number of extensions: 1217345
Number of successful extensions: 2977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2976
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)