ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q300_MOUSE (Q02722) Protein Q300 30 1.2
2PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 30 1.6
3FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reducta... 30 2.1
4FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reducta... 30 2.1
5CR015_HUMAN (Q96N68) Protein C18orf15 30 2.1
6HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor 28 6.0
7YEN6_SCHPO (O13699) Hypothetical UPF0300 protein C11G7.06c in ch... 28 7.9
8PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit ... 28 7.9
9PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 28 7.9
10FPRB_MYCLE (O33064) Probable ferredoxin/ferredoxin--NADP reducta... 28 7.9
11CRR1_ASHGO (Q75A41) Probable glycosidase CRR1 precursor (EC 3.2.... 28 7.9

>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 114 YLCVGSCICVCAQSCVPCVVIRSMGSLVLISPHSFSC 4
           Y+CV  C+CVC   C    + +S G+L   S  +  C
Sbjct: 26  YVCVCVCVCVCVCVCTLTCMCKSGGNLGCSSSGAIHC 62



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 285 AGAIKALGSFRSNA 244
           AGAIKALGSFRSNA
Sbjct: 277 AGAIKALGSFRSNA 290



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>FPRB_MYCTU (P65528) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 237 VIHVMCMQD*SNGALC---CVHPSKEKAAFATSRQ-FSCPLQWSCYLCVGSCICVCAQSC 70
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 69  V 67
           +
Sbjct: 61  I 61



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>FPRB_MYCBO (P65529) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 575

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 237 VIHVMCMQD*SNGALC---CVHPSKEKAAFATSRQ-FSCPLQWSCYLCVGSCICVCAQSC 70
           VI   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C  S 
Sbjct: 4   VITQSCCNDASCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVTACPVSA 60

Query: 69  V 67
           +
Sbjct: 61  I 61



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>CR015_HUMAN (Q96N68) Protein C18orf15|
          Length = 181

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -1

Query: 207 SNGALCCVHPSKEKAAFATSRQFSCPLQWSC-YLCVGSCICVCAQSCVPCVVIRSMGSLV 31
           + G  C VHP         +    C    +C Y+C+   +C+CA +C+       M    
Sbjct: 112 ARGPCCPVHPQSLTVVCMCACMCVCVHVCACVYVCMCVLVCMCACACMRAHRYFLMDCAG 171

Query: 30  LISPH 16
           + SPH
Sbjct: 172 ICSPH 176



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>HEPC1_SALSA (Q801Y3) Hepcidin-1 precursor|
          Length = 86

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 103 RQLHMRMCPVMRAVCCNSVHGIAC 32
           RQ+H+ +C     +CCN  H I C
Sbjct: 61  RQIHLSLC----GLCCNCCHNIGC 80



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>YEN6_SCHPO (O13699) Hypothetical UPF0300 protein C11G7.06c in chromosome I|
          Length = 430

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 112 ITRPLQRATELARSCKSGFLFGW--MDTAQGAIASILHAHHMDNSLRV 249
           I R   +   LARSC SGF   W  M T+ G+ AS +  H    S R+
Sbjct: 269 IFRRRSKYFNLARSCVSGFELSWLIMMTSIGSNASAVPVHAYLASKRI 316



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>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase|
           regulatory subunit 5) (PI3-kinase p101 subunit)
           (PtdIns-3-kinase p101) (p101-PI3K)
           (Phosphatidylinositol-4,5-bisphosphate 3-kinase
           regulatory subunit) (PtdIns-3-kinase regulato
          Length = 877

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 193 VLCPSIQRESRFCNFSPVQLP-AAMVVLFMCR 101
           VLC S++ E R    SP QLP  A ++L+ CR
Sbjct: 630 VLCQSLKAEPRPLEGSPAQLPILADMLLYYCR 661



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -1

Query: 285 AGAIKALGSFRSNA 244
           A AIKALGSFRSNA
Sbjct: 265 ASAIKALGSFRSNA 278



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>FPRB_MYCLE (O33064) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 555

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 237 VIHVMCMQD*SNGALC---CVHPSKEKAAFATSRQ-FSCPLQWSCYLCVGSCICVC 82
           +I   C  D S    C   C+HP+ ++  FATS   +  P+  +C  C G+C+  C
Sbjct: 4   IITQSCCNDGSCVFACPVNCIHPTPDEPGFATSEMLYIDPV--ACVDC-GACVSAC 56



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>CRR1_ASHGO (Q75A41) Probable glycosidase CRR1 precursor (EC 3.2.-.-)|
           (CRH-related protein 1)
          Length = 450

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
 Frame = -1

Query: 186 VHPSKEKAAFATSRQFSCPLQWSCYLCVGSCIC--VCAQSCVP 64
           V P K     A S    CP +W C    G C    +C   C P
Sbjct: 20  VEPFKSNPYIACSEASHCPKEWPCCSQYGQCGSGPLCISGCNP 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,772,658
Number of Sequences: 219361
Number of extensions: 790150
Number of successful extensions: 2377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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