Clone Name | rbart20c10 |
---|---|
Clone Library Name | barley_pub |
>gb|AF139814.1|AF139814 Triticum aestivum plasma membrane intrinsic protein 1 (PIP1) mRNA, complete cds Length = 1283 Score = 317 bits (160), Expect = 1e-83 Identities = 260/288 (90%), Gaps = 9/288 (3%) Strand = Plus / Minus Query: 6 aggaaaaggaatgcgggctaattaagacaagcgatcccatggaccgaattacaacacacg 65 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1189 aggaaaagcaatgcgggctaattaagacaagcgatcccatggaccgaattacaagacacg 1130 Query: 66 gcacgcatgactgggc-acatac---gcatatgcagctgccgacacataaataacacgac 121 ||||||||||| || | || ||| |||||||||||||||||||||||| ||||||||| Sbjct: 1129 gcacgcatgaccggaccacgtactacgcatatgcagctgccgacacataa-taacacgac 1071 Query: 122 cattgcagcgggc-aactgaactggcgagaagttgcaaaagcggctttctctttggatgg 180 |||||| |||| | |||||||||| |||||||||||||||||| ||||||| ||||||| Sbjct: 1070 cattgcggcggccgaactgaactgtcgagaagttgcaaaagcgcatttctctctggatgg 1011 Query: 181 atggacacagcacagggcgccattgcttcaatcttgcatgcacatcacatg---gataac 237 ||||||||| ||| || ||||||||||||| |||||||| || || ||||| |||||| Sbjct: 1010 atggacacaacacgggtcgccattgcttcagtcttgcatacagatgacatggatgataac 951 Query: 238 tcgttacgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 ttgttacgcgttgctcctgaaggagccgagggccttgatggcgccggc 903
>gb|AF062393.1|AF062393 Oryza sativa aquaporin (PIP2a) mRNA, complete cds Length = 1328 Score = 85.7 bits (43), Expect = 7e-14 Identities = 43/43 (100%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 968 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 926
>gb|BT016583.1| Zea mays clone Contig416 mRNA sequence Length = 1348 Score = 79.8 bits (40), Expect = 4e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgcc 282 |||||||||||||||||||||||||||||||||||||||| Sbjct: 924 acgcgttgctcctgaaggagccgagggccttgatggcgcc 885
>gb|AY243801.1| Zea mays aquaporin (PIP2-1) mRNA, complete cds Length = 1133 Score = 79.8 bits (40), Expect = 4e-12 Identities = 40/40 (100%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgcc 282 |||||||||||||||||||||||||||||||||||||||| Sbjct: 872 acgcgttgctcctgaaggagccgagggccttgatggcgcc 833
>ref|NM_187092.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 936
>ref|XM_507363.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1257 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 980 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 938
>ref|XM_506304.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1047_A06.117 mRNA Length = 1298 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 939
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 15355852 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 15355810 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 15306551 tacgcgttgctccggaaggagccg 15306528
>dbj|AB029446.1| Oryza sativa (indica cultivar-group) rwc-2 mRNA for water channel protein, partial cds Length = 880 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 544 acgcgttgctcctgaaggagccgagggccttgatggggccggc 502
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1047_A06 Length = 111673 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 62851 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 62809 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 13550 tacgcgttgctccggaaggagccg 13527
>dbj|AK119656.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-H04, full insert sequence Length = 1216 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 936
>dbj|AK105524.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence Length = 1451 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 572 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 530
>dbj|AK103970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B05, full insert sequence Length = 1242 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 978 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 936
>dbj|AK072519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K12, full insert sequence Length = 1298 Score = 77.8 bits (39), Expect = 2e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 981 acgcgttgctcctgaaggagccgagggctttgatggcgccggc 939
>gb|AF326491.1|AF326491 Zea mays plasma membrane integral protein ZmPIP2-1 mRNA, complete cds Length = 1171 Score = 73.8 bits (37), Expect = 3e-10 Identities = 37/37 (100%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggc 279 ||||||||||||||||||||||||||||||||||||| Sbjct: 943 acgcgttgctcctgaaggagccgagggccttgatggc 907
>gb|AF326492.1|AF326492 Zea mays plasma membrane integral protein ZmPIP2-2 mRNA, complete cds Length = 1268 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgcc 282 ||||||||||||||||||||||||| |||||||||||||| Sbjct: 996 acgcgttgctcctgaaggagccgagagccttgatggcgcc 957
>gb|AY109332.1| Zea mays CL502_5 mRNA sequence Length = 1969 Score = 71.9 bits (36), Expect = 1e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgcc 282 ||||||||||||||||||||||||| |||||||||||||| Sbjct: 1646 acgcgttgctcctgaaggagccgagagccttgatggcgcc 1607
>dbj|AK103938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G03, full insert sequence Length = 1257 Score = 69.9 bits (35), Expect = 4e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 243 acgcgttgctcctgaaggagccgagggccttgatggcgccggc 285 ||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 980 acgcgttgctcctgagggagccgagggctttgatggcgccggc 938
>gb|AY903443.1| Astragalus membranaceus clone AM79 putative plasma membrane intrinsic protein mRNA, complete cds Length = 1120 Score = 48.1 bits (24), Expect = 0.015 Identities = 30/32 (93%) Strand = Plus / Minus Query: 248 ttgctcctgaaggagccgagggccttgatggc 279 |||||||||||||| ||||| ||||||||||| Sbjct: 839 ttgctcctgaaggatccgagagccttgatggc 808
>ref|XM_475029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 849 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 837 gttgctccggaaggagcccagcgccttgatggc 805
>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06, complete sequence Length = 127420 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Plus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 91012 gttgctccggaaggagcccagcgccttgatggc 91044
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Plus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 8906703 gttgctccggaaggagcccagcgccttgatggc 8906735
>dbj|AK102155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086E18, full insert sequence Length = 1308 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 936 gttgctccggaaggagcccagcgccttgatggc 904
>dbj|AK061491.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B05, full insert sequence Length = 1309 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 930 gttgctccggaaggagcccagcgccttgatggc 898
>dbj|AK061312.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B10, full insert sequence Length = 1296 Score = 42.1 bits (21), Expect = 0.94 Identities = 30/33 (90%) Strand = Plus / Minus Query: 247 gttgctcctgaaggagccgagggccttgatggc 279 |||||||| ||||||||| || ||||||||||| Sbjct: 924 gttgctccggaaggagcccagcgccttgatggc 892
>ref|NM_187081.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1215 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931
>gb|AC129492.6| Homo sapiens chromosome 17, clone RP11-599B13, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ggatggacacagcacagggc 198 |||||||||||||||||||| Sbjct: 141383 ggatggacacagcacagggc 141402
>emb|AL596209.13| Mouse DNA sequence from clone RP23-278F12 on chromosome 11 Contains the 3' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), the Prpsap2 gene for phosphoribosyl pyrophosphate synthetase-associated protein 2, the gene for a novel sodium/glucose cotransporter protein, the gene for a novel protein (2310040C09Rik), the Grap gene for GRB2-related adaptor protein and a CpG island, complete sequence Length = 186359 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tttctctttggatggatgga 185 |||||||||||||||||||| Sbjct: 79799 tttctctttggatggatgga 79818
>gb|AC104762.7| Homo sapiens chromosome 17, clone RP11-769H22, complete sequence Length = 162678 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 ggatggacacagcacagggc 198 |||||||||||||||||||| Sbjct: 141383 ggatggacacagcacagggc 141402
>dbj|AB030817.1| Homo sapiens hper1 gene for period1, complete cds Length = 16682 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggatggacacagcacagggc 198 |||||||||||||||||||| Sbjct: 10756 ggatggacacagcacagggc 10737
>gb|AC130329.8| Homo sapiens chromosome 17, clone RP13-348C17, complete sequence Length = 74378 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggatggacacagcacagggc 198 |||||||||||||||||||| Sbjct: 36917 ggatggacacagcacagggc 36898
>gb|AF102137.1|AF102137 Homo sapiens PER1 gene, complete cds Length = 14867 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggatggacacagcacagggc 198 |||||||||||||||||||| Sbjct: 7794 ggatggacacagcacagggc 7775
>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0475E07 Length = 139961 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 92564 tacgcgttgctccggaaggagccg 92541
>dbj|AK072632.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132K03, full insert sequence Length = 1215 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 242 tacgcgttgctcctgaaggagccg 265 ||||||||||||| |||||||||| Sbjct: 954 tacgcgttgctccggaaggagccg 931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,488,873 Number of Sequences: 3902068 Number of extensions: 2488873 Number of successful extensions: 39391 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39318 Number of HSP's gapped (non-prelim): 70 length of query: 285 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 263 effective length of database: 17,147,199,772 effective search space: 4509713540036 effective search space used: 4509713540036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)