ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 408 e-111
2dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhi... 224 2e-55
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
5gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
7dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
8dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
10dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for ch... 56 9e-05
11dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
12dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
13dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
14dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
15dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homolo... 56 9e-05
16dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for ... 56 9e-05
17dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
18dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
19dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
20ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.021
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
22dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
23dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
24gb|AC120544.9| Mus musculus chromosome 1, clone RP23-299N6, comp... 44 0.33
25ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.33
26gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv.... 44 0.33
27gb|AY107125.1| Zea mays PCO125117 mRNA sequence 44 0.33
28emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA 42 1.3
29gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, co... 42 1.3
30gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, comple... 42 1.3
31gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 42 1.3
32dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
33gb|BC051632.1| Mus musculus tripartite motif protein 10, mRNA (c... 40 5.1
34gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosom... 40 5.1
35gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 40 5.1
36gb|AC002529.1| Homo sapiens BAC clone CTB-161N6 from 7, complete... 40 5.1
37gb|AC004901.1| Homo sapiens PAC clone RP5-817I18 from 7, complet... 40 5.1
38emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr... 40 5.1
39emb|AL355305.9| Human DNA sequence from clone RP11-487F23 on chr... 40 5.1
40gb|AC152392.6| Mus musculus chromosome 1, clone RP23-300P10, com... 40 5.1
41gb|AC165053.2| Phakopsora pachyrhizi clone JGIAFNA-1305N22, comp... 40 5.1
42emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 i... 40 5.1
43gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete se... 40 5.1
44gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Ca... 40 5.1
45gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, gen... 40 5.1
46gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom... 40 5.1
47gb|AF220121.1|AF220121 Mus musculus tripartite motif protein TRI... 40 5.1
48gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 40 5.1
49gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 40 5.1
50gb|AC026310.24|AC026310 Homo sapiens 12 BAC RP11-662I13 (Roswell... 40 5.1
51dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DN... 40 5.1
52dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.1
53dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.1
54emb|BX005267.7| Zebrafish DNA sequence from clone DKEY-46K2 in l... 40 5.1
55emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in... 40 5.1
56dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.1
57gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 40 5.1
58gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 fr... 40 5.1
59gb|AC002402.1|AC002402 Human Chromosome 11 pac pDJ205d23, comple... 40 5.1
60emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 40 5.1
61gb|AC170580.3| Medicago truncatula chromosome 7 BAC clone mte1-3... 40 5.1 
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene)
          Length = 915

 Score =  408 bits (206), Expect = e-111
 Identities = 245/258 (94%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856

                                                                       
Query: 187 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctggagtagac 246
           ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgccgtagtagac 796

                                                                       
Query: 247 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtataaccg 306
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 795 gttcttggggtgtacccactggtgggacttgtcgtccgccgtgagcccgacgtagaaccg 736

                                                                       
Query: 307 ggtggcagggtacgccgccgtccactcgttccacgagccctcccacccaaagttctgggt 366
           |||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||| |
Sbjct: 735 ggtggccgggtacgccgccgtccacttgtcccacgagccctcccacccaaggttctggtt 676

                             
Query: 367 gcacccattgtcgctctc 384
           |||||  |||||||||||
Sbjct: 675 gcaccacttgtcgctctc 658
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>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III,
           complete cds
          Length = 934

 Score =  224 bits (113), Expect = 2e-55
 Identities = 182/205 (88%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 186
           ||||||||||||||||||  |||| ||||||| | |||||||||||||||| ||||||||
Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873

                                                                       
Query: 187 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctggagtagac 246
           ||||||||  ||||||||||||||||||||||||  |||||||| || || | |||||||
Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgcaccaccggcgtgatgccgtagtagac 813

                                                                       
Query: 247 gttcttggggtgtacccactggtaggacttgtcgtccgccgtgagcccgacgtataaccg 306
           |||||||||||||| ||||||||| ||||| ||||| || |||||||||| | | |||||
Sbjct: 812 gttcttggggtgtatccactggtacgacttctcgtcggcggtgagcccgatgaagaaccg 753

                                    
Query: 307 ggtggcagggtacgccgccgtccac 331
           |||||| ||||||||||||||||||
Sbjct: 752 ggtggccgggtacgccgccgtccac 728
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                            
Query: 139      cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 198
                ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715

                                                                            
Query: 199      gccgtagttgtccttcttctgcgacaccggcgcgacgctggagtagacgttcttggggtg 258
                |||||||||||||  ||||||||    ||| ||||||  | |||||||||||||||||||
Sbjct: 14484716 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 14484775

                       
Query: 259      tacccac 265
                 ||||||
Sbjct: 14484776 cacccac 14484782
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>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0021M10
          Length = 163416

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Plus

                                                                         
Query: 139   cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 198
             ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| |||
Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889

                                                                         
Query: 199   gccgtagttgtccttcttctgcgacaccggcgcgacgctggagtagacgttcttggggtg 258
             |||||||||||||  ||||||||    ||| ||||||  | |||||||||||||||||||
Sbjct: 77890 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 77949

                    
Query: 259   tacccac 265
              ||||||
Sbjct: 77950 cacccac 77956
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>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0022E16 map C481S, complete sequence
          Length = 179668

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 160   ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
             ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 166   cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
             ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 168   tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
             |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 160      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 166      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 168      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
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>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full
           insert sequence
          Length = 1176

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
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>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full
           insert sequence
          Length = 1234

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 160      ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
                ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 166      cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
                ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 168      tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
                |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
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>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete
           cds
          Length = 1220

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
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>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C60571
          Length = 1220

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
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>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C11701
          Length = 1171

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
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>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C12269
          Length = 1214

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
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>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds, clone:C3540
          Length = 1229

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
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>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a),
           complete cds,clone:C10295
          Length = 1199

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
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>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase
           homologue (OsChib3H-a)H-, complete cds, clone:C60129
          Length = 1187

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 160 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 207
           ||||||||||||| || ||| ||||||||||||||| ||||| |||||
Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
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>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full
           insert sequence
          Length = 1162

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 166 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
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>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full
           insert sequence
          Length = 1193

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 166 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
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>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full
           insert sequence
          Length = 1153

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 166 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
           ||||||| |||| || ||||||||||||| |||||||||||||
Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
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>ref|NM_193094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 162 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 221
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 857

                   
Query: 222 acaccggc 229
           || |||||
Sbjct: 856 actccggc 849
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 162      tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 221
                |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 26162418

                        
Query: 222      acaccggc 229
                || |||||
Sbjct: 26162417 actccggc 26162410
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>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full
           insert sequence
          Length = 1165

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 162 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 221
           |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 905

                   
Query: 222 acaccggc 229
           || |||||
Sbjct: 904 actccggc 897
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0519E12
          Length = 152448

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 162   tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 221
             |||||||||||  ||| || ||||||| ||||| ||||||||||||| ||  ||||||| 
Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 54276

                     
Query: 222   acaccggc 229
             || |||||
Sbjct: 54275 actccggc 54268
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>gb|AC120544.9| Mus musculus chromosome 1, clone RP23-299N6, complete sequence
          Length = 223752

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 10     caactgttcaaatattattttt 31
              ||||||||||||||||||||||
Sbjct: 157900 caactgttcaaatattattttt 157879
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>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative
           endoplasmic reticulum protein, with at least 5
           transmembrane domains, of eukaryotic origin (56.3 kD)
           (4P439) (LOC592817), mRNA
          Length = 1917

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 149 ctgctgtagttggtctgcttgt 170
           ||||||||||||||||||||||
Sbjct: 86  ctgctgtagttggtctgcttgt 107
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>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258,
           mercuric chloride-treated, leaves, mRNA Partial, 945 nt]
          Length = 945

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 179 cggtcccagagcatgatgccgccgtagttg 208
           |||||||| | |||||||||||||||||||
Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
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>gb|AY107125.1| Zea mays PCO125117 mRNA sequence
          Length = 1252

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 179 cggtcccagagcatgatgccgccgtagttg 208
           |||||||| | |||||||||||||||||||
Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
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>emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 22   tattatttttatttatccaag 42
            |||||||||||||||||||||
Sbjct: 1059 tattatttttatttatccaag 1079
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>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence
          Length = 201723

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    aaatattatttttatttatccaagt 43
             ||||||||||||||||||| |||||
Sbjct: 72747 aaatattatttttatttatacaagt 72771
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>gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, complete sequence
          Length = 105033

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    tcaaatattatttttatttat 37
             |||||||||||||||||||||
Sbjct: 60856 tcaaatattatttttatttat 60876
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 16      ttcaaatattatttttattta 36
               |||||||||||||||||||||
Sbjct: 1004613 ttcaaatattatttttattta 1004593
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>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full
           insert sequence
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 168 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 208
           |||||||||  |||| |||||||| || |||||||||||||
Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
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>gb|BC051632.1| Mus musculus tripartite motif protein 10, mRNA (cDNA clone MGC:59325
            IMAGE:6507331), complete cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   ttcaaatattatttttatttatcc 39
            |||||||| |||||||||||||||
Sbjct: 2212 ttcaaataatatttttatttatcc 2189
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>gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosome 1, complete sequence
          Length = 177383

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aaatattatttttatttatc 38
              ||||||||||||||||||||
Sbjct: 146338 aaatattatttttatttatc 146319
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>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttcaaatattatttttattt 35
             ||||||||||||||||||||
Sbjct: 86825 ttcaaatattatttttattt 86806
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>gb|AC002529.1| Homo sapiens BAC clone CTB-161N6 from 7, complete sequence
          Length = 136755

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttcaaatattatttttattt 35
             ||||||||||||||||||||
Sbjct: 82125 ttcaaatattatttttattt 82106
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>gb|AC004901.1| Homo sapiens PAC clone RP5-817I18 from 7, complete sequence
          Length = 80288

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttcaaatattatttttattt 35
             ||||||||||||||||||||
Sbjct: 24747 ttcaaatattatttttattt 24766
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>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the
             KATNAL1 gene for katanin p60 subunit A-like 1, a
             peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and
             two CpG islands, complete sequence
          Length = 182303

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    aaatattatttttatttatccaag 42
             |||||||||||| |||||||||||
Sbjct: 77731 aaatattattttgatttatccaag 77754
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>emb|AL355305.9| Human DNA sequence from clone RP11-487F23 on chromosome 6 Contains the 5'
              end of the gene for p53 regulated PA26 nuclear protein
              (PA26-T1), a novel gene and part of a novel gene, complete
              sequence
          Length = 185257

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     aatattatttttatttatcc 39
              ||||||||||||||||||||
Sbjct: 130904 aatattatttttatttatcc 130885
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>gb|AC152392.6| Mus musculus chromosome 1, clone RP23-300P10, complete sequence
          Length = 225267

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   aaatattatttttatttatc 38
            ||||||||||||||||||||
Sbjct: 1988 aaatattatttttatttatc 1969
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>gb|AC165053.2| Phakopsora pachyrhizi clone JGIAFNA-1305N22, complete sequence
          Length = 40161

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttcaaatattatttttattt 35
             ||||||||||||||||||||
Sbjct: 32611 ttcaaatattatttttattt 32592
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>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7
             Contains three CpG islands, complete sequence
          Length = 110786

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    caatacatcagaatcaaatc 91
             ||||||||||||||||||||
Sbjct: 43424 caatacatcagaatcaaatc 43405
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>gb|AC146342.5| Medicago truncatula clone mth2-10o20, complete sequence
          Length = 112154

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tgttcaaatattatttttatttat 37
             ||||||||| ||||||||||||||
Sbjct: 52585 tgttcaaattttatttttatttat 52608
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>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     aaatattatttttatttatc 38
              ||||||||||||||||||||
Sbjct: 193150 aaatattatttttatttatc 193131
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>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence
          Length = 103866

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 218   tgcgacaccggcgcgacgctggagtaga 245
             ||||||| ||||||||||| ||||||||
Sbjct: 65729 tgcgacaacggcgcgacgcgggagtaga 65702
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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown,
             complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    aaatattatttttatttatccaag 42
             |||||||||||| |||||||||||
Sbjct: 62959 aaatattattttgatttatccaag 62936
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>gb|AF220121.1|AF220121 Mus musculus tripartite motif protein TRIM10 (Trim10) mRNA, complete
            cds
          Length = 2269

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 16   ttcaaatattatttttatttatcc 39
            |||||||| |||||||||||||||
Sbjct: 2226 ttcaaataatatttttatttatcc 2203
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>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
              complete sequence
          Length = 161729

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 16     ttcaaatattatttttatttatcc 39
              |||||||| |||||||||||||||
Sbjct: 118150 ttcaaataatatttttatttatcc 118127
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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
             complete sequence
          Length = 172199

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    ttcaaatattatttttatttatcc 39
             |||||||| |||||||||||||||
Sbjct: 45458 ttcaaataatatttttatttatcc 45435
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>gb|AC026310.24|AC026310 Homo sapiens 12 BAC RP11-662I13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 124000

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aaatattatttttatttatc 38
             ||||||||||||||||||||
Sbjct: 37417 aaatattatttttatttatc 37398
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>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence
          Length = 94287

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 187   gagcatgatgccgccgtagttgtccttc 214
             ||||||||||| |||| |||||||||||
Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     cgacaccggcgcgacgctgg 239
               ||||||||||||||||||||
Sbjct: 2532522 cgacaccggcgcgacgctgg 2532503
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     ttctgcgacaccggcgcgac 234
               ||||||||||||||||||||
Sbjct: 5735197 ttctgcgacaccggcgcgac 5735178
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>emb|BX005267.7| Zebrafish DNA sequence from clone DKEY-46K2 in linkage group 19,
             complete sequence
          Length = 104035

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttcaaatattatttttattt 35
             ||||||||||||||||||||
Sbjct: 59539 ttcaaatattatttttattt 59520
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>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4,
             complete sequence
          Length = 166156

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    aactgttcaaatattatttttatt 34
             |||||||||||||||||| |||||
Sbjct: 24131 aactgttcaaatattattattatt 24108
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>dbj|AP001892.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-49M9, complete
             sequences
          Length = 144308

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tcaaatattatttttattta 36
             ||||||||||||||||||||
Sbjct: 98678 tcaaatattatttttattta 98659
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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
             sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    ttcaaatattatttttatttatcc 39
             |||||||| |||||||||||||||
Sbjct: 45440 ttcaaataatatttttatttatcc 45417
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>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown,
             complete sequence
          Length = 128941

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    attatttttatttatccaagtaca 46
             ||||| ||||||||||||||||||
Sbjct: 66721 attatctttatttatccaagtaca 66744
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>gb|AC002402.1|AC002402 Human Chromosome 11 pac pDJ205d23, complete sequence
          Length = 130381

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    aaatattatttttatttatccaag 42
             |||||||||||| |||||||||||
Sbjct: 61542 aaatattattttgatttatccaag 61565
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>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
              sequence
          Length = 202624

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     ttcaaatattatttttatttatcc 39
              |||||||| |||||||||||||||
Sbjct: 140172 ttcaaataatatttttatttatcc 140195
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>gb|AC170580.3| Medicago truncatula chromosome 7 BAC clone mte1-32m6, complete sequence
          Length = 44332

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aaatattatttttatttatc 38
             ||||||||||||||||||||
Sbjct: 11045 aaatattatttttatttatc 11064


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,545,090
Number of Sequences: 3902068
Number of extensions: 3545090
Number of successful extensions: 134542
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134257
Number of HSP's gapped (non-prelim): 283
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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