ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20c03 |
|---|---|
| Clone Library Name | barley_pub |
>PHOP1_BRARE (Q6DBV4) Probable phosphatase phospho1 (EC 3.1.3.-)| Length = 279 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -1 Query: 464 LRLAREDFMMPRKGFPVWELICE----NPGLLQAEVHPWSDGKDMEETLLRLISR 312 L L+ D PR+ FP+ +LI E PG +A V PW G+D+ TL +++ R Sbjct: 224 LTLSPGDVAFPRRDFPMHKLIQEMGEAKPGEFKASVVPWKSGEDVVNTLRKILER 278
>PHOP1_CHICK (O73884) Phosphoethanolamine/phosphocholine phosphatase (EC| 3.1.3.75) (3X11A) Length = 268 Score = 33.9 bits (76), Expect = 0.21 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Frame = -1 Query: 458 LAREDFMMPRKGFPVWELICE----NPGLLQAEVHPWSDGKDMEETLLRLISR 312 L D PRKG+P+ ++ E PG QA V PW ++ L L+ + Sbjct: 214 LTSADVAFPRKGYPMHQMTQEMEKKQPGTFQATVVPWESATEVARYLQELLKK 266
>YX0A_CAEEL (Q11116) Hypothetical protein C03B1.10| Length = 52 Score = 33.1 bits (74), Expect = 0.36 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 176 GWMDGWMDGWI 208 GWMDGWMDGW+ Sbjct: 31 GWMDGWMDGWM 41 Score = 33.1 bits (74), Expect = 0.36 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 176 GWMDGWMDGWI 208 GWMDGWMDGW+ Sbjct: 27 GWMDGWMDGWM 37 Score = 33.1 bits (74), Expect = 0.36 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 176 GWMDGWMDGWI 208 GWMDGWMDGW+ Sbjct: 23 GWMDGWMDGWM 33 Score = 33.1 bits (74), Expect = 0.36 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = +2 Query: 176 GWMDGWMDGWI 208 GWMDGWMDGW+ Sbjct: 19 GWMDGWMDGWM 29 Score = 31.6 bits (70), Expect = 1.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 139 QIQNPQINRNEARMDGWMDGWMDQFL 216 ++Q +++ MDGWMDGWMD ++ Sbjct: 8 EVQWMEVSGRLGWMDGWMDGWMDGWM 33 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = +1 Query: 106 IRQANQNQKIYQIQNPQINRNEARMDGWMDGWMDQFL 216 + + N N+ + + ++ + MDGWMDGWMD ++ Sbjct: 1 MEEDNPNEVQWMEVSGRLGWMDGWMDGWMDGWMDGWM 37 Score = 31.2 bits (69), Expect = 1.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +1 Query: 178 MDGWMDGWMDQFLTPSGMG 234 MDGWMDGWMD ++ G+G Sbjct: 29 MDGWMDGWMDGWM--GGLG 45 Score = 30.8 bits (68), Expect = 1.8 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = +3 Query: 177 DGWMDGWMDG 206 DGWMDGWMDG Sbjct: 30 DGWMDGWMDG 39
>ZP4_RABIT (Q00193) Zona pellucida sperm-binding protein 4 precursor (Zona| pellucida sperm-binding protein B) (Zona pellucida glycoprotein ZP-X) (RC55) Length = 540 Score = 32.7 bits (73), Expect = 0.47 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = -1 Query: 404 ICENPGLLQAEVHPWSDGKDMEETLLRL-ISRVLVEESQLLPLDCKLESLPVAVQDGMPM 228 I EN L EV WS G +++ RL +S S LP+D + +LP + + P Sbjct: 258 IYENELLATREVRTWSRGSITRDSIFRLRVSCSYSISSSALPVDMHVLTLPPPLPETQPG 317 Query: 227 PLGV 216 PL V Sbjct: 318 PLTV 321
>PHOP1_MOUSE (Q8R2H9) Phosphoethanolamine/phosphocholine phosphatase (EC| 3.1.3.75) Length = 267 Score = 32.3 bits (72), Expect = 0.62 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -1 Query: 458 LAREDFMMPRKGFPVWELICE----NPGLLQAEVHPWSDGKDMEETLLRLI 318 LA D PR+G+P+ LI E P +A V PW D+ + L +++ Sbjct: 214 LAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRAHVVPWETAADVRQHLQQVL 264
>YRMB_CAEEL (Q09418) Hypothetical protein R06F6.11 precursor| Length = 99 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 198 MDGSVLDAERHGHAVLDGHRQRLELAVE-RQQLALLDEHPADEPQQRLLHV 347 M G L A+ H A+ ++ LA E QQL L+D P DE QQ + HV Sbjct: 21 MTGFGLPADNHKVALGGPIQESAGLADEGEQQLQLVDVSPQDEGQQNVAHV 71
>PHOP1_HUMAN (Q8TCT1) Phosphoethanolamine/phosphocholine phosphatase (EC| 3.1.3.75) Length = 267 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -1 Query: 458 LAREDFMMPRKGFPVWELICE----NPGLLQAEVHPWSDGKDMEETLLRLI 318 LA D PR+G+P+ LI E P +A V PW D+ L +++ Sbjct: 214 LAGGDVAFPRRGYPMHRLIQEAQKAEPSSFRASVVPWETAADVRLHLQQVL 264
>DOCK6_MOUSE (Q8VDR9) Dedicator of cytokinesis protein 6 (Fragment)| Length = 849 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Frame = +3 Query: 264 LELAVERQQ-----LALLDEHPADEPQQRLLHVL---AVAPWVHLG-LEQSRVLADELPH 416 +E+A+E Q LA E D P ++L ++ +V P V+ G LE ++V E+P Sbjct: 704 VEVAIEDMQKKTRELAFATEQ--DPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLSEIPE 761 Query: 417 GESLARHHEVL 449 L RHH L Sbjct: 762 DPKLFRHHNKL 772
>PUR2_YARLI (Q99148) Bifunctional purine biosynthetic protein ADE1 [Includes:| Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase); Phosphoribosylformylglycinamidine cyclo- Length = 788 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -1 Query: 425 GFPVWELICENPGLLQAEVHPWSDGKDMEETLLRLISRVLVEESQLLP-LDCKLESLPVA 249 GF + I E+ GL + PW K + E LL +R+ V+ QLLP ++ KL S Sbjct: 627 GFSLVRKIIEHAGLTYTDACPWDQSKSLGEALL-TPTRIYVK--QLLPVINAKLTSALAH 683 Query: 248 VQDG 237 + G Sbjct: 684 ITGG 687
>TPMT_PONPY (Q5RBJ3) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +3 Query: 129 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 254 E+ SDTE + + W D W++G+ + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGNTAFHQEQGHRLLKKH 52
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 29.6 bits (65), Expect = 4.0 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Frame = +3 Query: 264 LELAVERQQ-----LALLDEHPADEPQQRLLHVL---AVAPWVHLG-LEQSRVLADELPH 416 +E+A+E Q LA E D P ++L ++ +V P V+ G LE ++V E+P Sbjct: 1902 VEVAIEDMQKKTRELAFATEQ--DPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPE 1959 Query: 417 GESLARHHEVL 449 L RHH L Sbjct: 1960 DPKLFRHHNKL 1970
>CXS62_CONST (Q9XZL5) Omega-conotoxin SVIA mutant 2 precursor| Length = 72 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 445 TS*CRARDSPCGSSSARTRDCSRPRCT 365 T+ CR SPCG +S CSR +CT Sbjct: 46 TTRCRPSGSPCGVTSICCGRCSRGKCT 72
>CXO15_CONST (Q5K0D5) Conotoxin-15 precursor| Length = 72 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 445 TS*CRARDSPCGSSSARTRDCSRPRCT 365 T+ CR SPCG +S CSR +CT Sbjct: 46 TTRCRPSGSPCGVTSICCGRCSRGKCT 72
>Y1150_HAEIN (P45075) Hypothetical protein HI1150| Length = 209 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +1 Query: 13 IHYYRVRHWRSNTSPLISFLQRPTQTRTHQLIRQANQNQKIYQIQNPQINRNEARM 180 I +Y V T+PL+ PT + + + ANQN + Q+ +++ N+AR+ Sbjct: 72 IEHYTVNEQTLFTAPLVYLY--PTTSNEKEKEKNANQNVDFFSTQSWKLSANQARL 125
>SCEL_MOUSE (Q9EQG3) Sciellin| Length = 652 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 250 PSRTACPCRSASRTDPSIHPSIHP 179 P A P +ASR DP++HP + P Sbjct: 144 PGHNASPSTAASRRDPALHPPLPP 167
>CUEO_SALTY (Q8ZRS2) Blue copper oxidase cueO precursor (Copper efflux oxidase)| Length = 536 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 371 VHPWSDGKDMEETLLRLISRVLVEESQL----LPLDCKLESLPVAVQD 240 +HP GK + + L VL+E+ ++ LP ++ +PV +QD Sbjct: 140 IHPHKHGKTGRQVAMGLAGLVLIEDDEIRKLRLPKQWGIDDVPVIIQD 187
>CUEO_SALTI (Q8Z9E1) Blue copper oxidase cueO precursor (Copper efflux oxidase)| Length = 536 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 371 VHPWSDGKDMEETLLRLISRVLVEESQL----LPLDCKLESLPVAVQD 240 +HP GK + + L VL+E+ ++ LP ++ +PV +QD Sbjct: 140 IHPHKHGKTGRQVAMGLAGLVLIEDDEIRKLRLPKQWGIDDVPVIIQD 187
>TPMT_PANTR (Q3BCR8) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 129 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 254 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>TPMT_HUMAN (P51580) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 129 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 254 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>TPMT_GORGO (Q3BCR3) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine| methyltransferase) Length = 245 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +3 Query: 129 EDISDTESPN*S**STDGWMDGWMDGSVLDAERHGHAVLDGH 254 E+ SDTE + + W D W++G + GH +L H Sbjct: 11 EEYSDTEVQKNQVLTLEEWQDKWVNGKTAFHQEQGHQLLKKH 52
>MDR4_ENTHI (P16877) Multidrug resistance protein 4 (P-glycoprotein) (Fragment)| Length = 113 Score = 29.3 bits (64), Expect = 5.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = +3 Query: 228 HGHAVLDGHRQRLELAVERQQLALLDEHP 314 HG +LDGH R E + R Q+ ++ + P Sbjct: 20 HGDVLLDGHNIRFEYSFLRSQIGMVGQEP 48
>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2330 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 432 AQGIPRVGAHLREPGTAPGRGAPME 358 A G+PRV A L GT G G+P+E Sbjct: 2024 ADGVPRVAADLGGLGTGSGSGSPVE 2048
>CJ006_HUMAN (Q8IX21) Protein C10orf6| Length = 1173 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = -1 Query: 341 EETLLRLISRVLVEESQLLPLDCKLESLPVAVQD 240 +ET L L+SRV S L+PL+ K +LPV+ +D Sbjct: 469 KETKLPLLSRVPSAGSSLVPLNAKNCALPVSKKD 502
>DPOLA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1488 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/32 (40%), Positives = 22/32 (68%) Frame = -1 Query: 338 ETLLRLISRVLVEESQLLPLDCKLESLPVAVQ 243 E++ +LIS + + S LL L C+L +P+A+Q Sbjct: 758 ESITKLISLTMQDNSYLLRLMCELNIMPLALQ 789
>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor| (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) Length = 1237 Score = 23.5 bits (49), Expect(2) = 8.0 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%) Frame = -1 Query: 314 RVLVEESQLLPLDCKLESLPVAVQDGMP-MPL 222 R + E LLP C S P A + G P +PL Sbjct: 1013 RRALPERSLLPAHCHYSSFPRAERSGRPYLPL 1044 Score = 23.5 bits (49), Expect(2) = 8.0 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 430 ARDSPCGSSSARTRDCSRPRCTHGATAR 347 AR + CG D SRP C H + AR Sbjct: 972 ARPATCGPPLP---DVSRPSCRHASDAR 996
>SIRB1_ECOLI (P0AGM5) Protein sirB1| Length = 269 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -1 Query: 404 ICENPGLLQAEVHPWSDGKDMEETLLRLISRVLVEESQLLPLDCKLESL 258 +CE L + +D+ + L RL+S E SQLLPL+ +LE L Sbjct: 14 LCEGMILACEAIRRDFPSQDVYDELERLVSLAKEEISQLLPLEEQLEKL 62
>SIRB1_ECO57 (P0AGM6) Protein sirB1| Length = 269 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -1 Query: 404 ICENPGLLQAEVHPWSDGKDMEETLLRLISRVLVEESQLLPLDCKLESL 258 +CE L + +D+ + L RL+S E SQLLPL+ +LE L Sbjct: 14 LCEGMILACEAIRRDFPSQDVYDELERLVSLAKEEISQLLPLEEQLEKL 62
>YHX7_YEAST (P38867) Hypothetical 51.9 kDa protein in CTR2-STB5 intergenic| region Length = 452 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -1 Query: 302 EESQLLPLDCKLESLPVAVQDGMPMPLGVKN*SIHPSIHPSIRASLRLIWGFC 144 ++ LLP+D + LP+ P P+GV N P+ P +R ++ FC Sbjct: 256 QQQYLLPID-EQNKLPLPYMQHQPQPIGVYN----PNYQPGLRRTVSQPMIFC 303 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,282,652 Number of Sequences: 219361 Number of extensions: 1154958 Number of successful extensions: 4187 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4158 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
