ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20c02 |
|---|---|
| Clone Library Name | barley_pub |
>GUNA_PSEFL (P10476) Endoglucanase A precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGA) Length = 962 Score = 31.2 bits (69), Expect = 0.65 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +2 Query: 137 TNTLFVPHQFFFLRIYQPNKKKAPPGAWS--PRAGKVSNPFLQLGSRSTGCSSTRLT 301 TNT+ PH F+ N APPGA S P AG + + F SR +GC+S T Sbjct: 516 TNTVAQPHHRFWAGALNSNYPWAPPGALSGGPNAG-LEDSF--SASRLSGCTSRPAT 569
>SYFB_THETH (P27002) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 785 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/67 (29%), Positives = 28/67 (41%) Frame = -1 Query: 281 IRSIGNLIVKKDLKLCRRAATTHRVALFFCLAGICARRKTGVERIACLCLLQTCKHSEQL 102 +R I N++ + + RA H L F GI RR ER+ L ++ H E L Sbjct: 239 MRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDL 298 Query: 101 FICNTAG 81 I G Sbjct: 299 VIAGWRG 305
>SYFB_THET8 (Q5SGX1) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 785 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/67 (29%), Positives = 28/67 (41%) Frame = -1 Query: 281 IRSIGNLIVKKDLKLCRRAATTHRVALFFCLAGICARRKTGVERIACLCLLQTCKHSEQL 102 +R I N++ + + RA H L F GI RR ER+ L ++ H E L Sbjct: 239 MRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREGERLKTLDGVERTLHPEDL 298 Query: 101 FICNTAG 81 I G Sbjct: 299 VIAGWRG 305
>SYFB_THET2 (Q72HA0) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 785 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/67 (29%), Positives = 28/67 (41%) Frame = -1 Query: 281 IRSIGNLIVKKDLKLCRRAATTHRVALFFCLAGICARRKTGVERIACLCLLQTCKHSEQL 102 +R I N++ + + RA H L F GI RR ER+ L ++ H E L Sbjct: 239 MRPINNVVDVTNYVMLERAQPMHAFDLRFIGEGILVRRARPGERLRTLDGVERTLHPEDL 298 Query: 101 FICNTAG 81 I G Sbjct: 299 VIAGWRG 305
>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1442 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +3 Query: 144 RYSFHTSFSSCAYTSQTKKKRHPVRGRRAPAKFQILFYN*VPDRPDA 284 + FH S+ + S+ H V GRR P + QI FYN PD D+ Sbjct: 147 KVEFHWGHSNGSAGSE-----HSVNGRRFPVEMQIFFYN--PDDFDS 186
>TOP1_PYRFU (O73954) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) [Contains: Endonuclease PI-PfuI (EC 3.1.-.-) (Pfu topA intein)] Length = 1060 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = +2 Query: 143 TLFVPHQFFFLRIYQPNKKKAPPGAWSPRAGKVSNPFLQLGSRSTGCSSTRLTYLLTYV 319 T F+ + L++ + KK PP +SP A L LG+++T Y Y+ Sbjct: 825 TFFIGERIKVLQVKREKKKTKPPARYSPAAVIKKMEDLGLGTKATRAQILETLYQRGYI 883
>YDHX_ECO57 (Q8X616) Putative ferredoxin-like protein ydhX| Length = 222 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = +1 Query: 100 NNCSECLQVCSKHKHAIRSTPVFLLAHIPAKQKKSATR 213 N C+ C + C K HA +AHIP + T+ Sbjct: 47 NGCNICARACRKTNHAPAQGSRLSIAHIPVTDNDNETQ 84
>POL2_ARMV (P24819) RNA2 polyprotein (P2) [Contains: Movement protein (2B-MP);| Coat protein (2C-CP)] (Fragment) Length = 506 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 182 ICARRKTGVERIACLCLLQTCKHSEQLFICNTAGVDP 72 +C + TG++ + +C LQ +L+I N AG +P Sbjct: 426 LCGDKATGMDGASRVCALQNMGCETELYIGNYAGANP 462
>YBS7_SCHPO (O94497) Hypothetical serine-rich protein C18E5.07 in chromosome II| Length = 615 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 173 LRIYQPNKKKAPPGAWSPRAGKVSNPFLQLGSRSTGCSS 289 +R + PNK K+P G SP +G+ S ++ +T S Sbjct: 500 MRSFVPNKSKSPSGTKSPASGETSEAGVKETETTTSSES 538
>PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase gamma precursor| (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma) Length = 1445 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +3 Query: 144 RYSFHTSFSSCAYTSQTKKKRHPVRGRRAPAKFQILFYN*VPDRPDA 284 + FH S+ + S+ H + GRR P + QI FYN PD D+ Sbjct: 147 KVEFHWGHSNGSAGSE-----HSINGRRFPVEMQIFFYN--PDDFDS 186
>POL2_ARMVN (Q91HK4) RNA2 polyprotein (P2) [Contains: P2A protein (2A); Movement| protein (2B-MP); Coat protein (2C-CP)] Length = 1110 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 182 ICARRKTGVERIACLCLLQTCKHSEQLFICNTAGVDP 72 +C + TG++ + +C LQ +L+I N AG +P Sbjct: 1030 LCGDKATGMDGASRVCALQNMGCETELYIGNFAGANP 1066
>POL2_ARMVS (Q65030) RNA2 polyprotein (P2) [Contains: P2A protein (2A); Movement| protein (2B-MP); Coat protein (2C-CP)] Length = 1131 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -1 Query: 182 ICARRKTGVERIACLCLLQTCKHSEQLFICNTAGVDP 72 +C + TG++ + +C LQ +L+I N AG +P Sbjct: 1051 LCGDKATGMDGASRVCALQNMGCETELYIGNYAGANP 1087
>Y2691_AGRT5 (Q8U527) UPF0314 protein Atu2691.1/AGR_C_4880| Length = 198 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 291 VLLHPVDREPNCKKGFETLPARGDHAPGGAFFLFGWY 181 V+L+ + R P C+ G+ L G + PG + L WY Sbjct: 29 VILYAMGRIPICECGYVKLFEPGVNTPGNSQHLADWY 65
>SYM_ARATH (Q9SVN5) Probable methionyl-tRNA synthetase (EC 6.1.1.10)| (Methionine--tRNA ligase) (MetRS) Length = 797 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/94 (27%), Positives = 45/94 (47%) Frame = +2 Query: 59 PKNVKDPHRRCYI*TIALNVCRFVANTNTLFVPHQFFFLRIYQPNKKKAPPGAWSPRAGK 238 P +KDP +C + N R + +T+ LF+ R+ KK + G+WS A + Sbjct: 182 PTELKDP--KC---KVCQNTPR-IRDTDHLFIELPLLKDRLEAYIKKTSVTGSWSQNAIQ 235 Query: 239 VSNPFLQLGSRSTGCSSTRLTYLLTYVLPITHRQ 340 +N +L+ G R C +T L + +P+ H + Sbjct: 236 TTNAWLRDGLRQR-C----ITRDLKWGVPVPHEK 264
>ENGC_NITEU (Q82Y12) Probable GTPase engC (EC 3.6.1.-)| Length = 314 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = +1 Query: 163 VFLLAHIPAKQKKSATRCVVAARRQSFKSFFTIR----FPIDRMQQHTPYLLTYLRTTHY 330 VF+LA +P+ + RC+VAA Q + + D +Q + L + R Y Sbjct: 94 VFVLAVVPSCNLELLDRCLVAAESQGIRPLILLNKIDLIGQDEQRQAVAHHLMFYRELGY 153 Query: 331 P 333 P Sbjct: 154 P 154
>ATXR6_ARATH (Q9FNE9) Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43)| (Trithorax-related protein 6) (TRX-related protein 6) (Protein SET DOMAIN GROUP 34) Length = 349 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = +1 Query: 76 STPAVLHMNNCSECLQVCSKHKHAIRSTPVFLLAHIPAKQKKSATRCV 219 S +LH ++ S+CL +C + I + H P +KK +CV Sbjct: 261 SMMTLLHASDPSQCLVICPDRRSNIARFISGINNHSPEGRKKQNLKCV 308
>FARP2_HUMAN (O94887) FERM, RhoGEF and pleckstrin domain-containing protein 2| (FERM domain including RhoGEF) (FIR) Length = 1054 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = -3 Query: 240 TLPARGDHAPGGAFFLFGWYMRKKKNWCGTNSVFVFATNLQTFRAIVHM*HRRCGSLTFF 61 T +R DH+ L G+ +RK KN G ++V TN F H SL Sbjct: 917 TSVSRADHSAAVENQLSGYLLRKFKNSHGWQKLWVVFTNFCLFFYKTHQDDYPLASLPLL 976 Query: 60 GSVCTTP 40 G + P Sbjct: 977 GYSVSIP 983
>FARP2_MOUSE (Q91VS8) FERM, RhoGEF and pleckstrin domain-containing protein 2| (FERM domain including RhoGEF) (FIR) Length = 1065 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/67 (29%), Positives = 27/67 (40%) Frame = -3 Query: 240 TLPARGDHAPGGAFFLFGWYMRKKKNWCGTNSVFVFATNLQTFRAIVHM*HRRCGSLTFF 61 T +R DH+ L G+ +RK KN G ++V TN F H SL Sbjct: 918 TSVSRADHSAAVENQLSGYLLRKFKNSNGWQKLWVVFTNFCLFFYKTHQDDYPLASLPLL 977 Query: 60 GSVCTTP 40 G + P Sbjct: 978 GYSVSLP 984 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,129,260 Number of Sequences: 219361 Number of extensions: 1088312 Number of successful extensions: 2576 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2576 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
