Clone Information

BLAST Search Result

Clone Name	rbart20b12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleo...	33	0.39
2	MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (...	33	0.39
3	NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2	32	1.1
4	HORN_HUMAN (Q86YZ3) Hornerin	31	1.5
5	TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase ...	30	2.5
6	STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-r...	30	2.5
7	ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet memb...	30	2.5
8	SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like k...	30	3.3
9	K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokerat...	30	3.3
10	K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokerat...	30	3.3
11	KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as...	30	4.3
12	K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokerat...	30	4.3
13	K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokerat...	30	4.3
14	PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33	30	4.3
15	KAPR_MAGGR (O14448) cAMP-dependent protein kinase regulatory sub...	29	5.6
16	ITA2B_MOUSE (Q9QUM0) Integrin alpha-IIb precursor (Platelet memb...	29	5.6
17	FLCN_XENTR (Q5M7Q1) Folliculin	29	5.6
18	PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-c...	29	5.6
19	HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)	29	5.6
20	NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA...	29	5.6
21	PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46	29	5.6
22	PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46	29	5.6
23	CLCE_ARATH (Q8GX93) Chloride channel protein CLC-e (AtCLC-e)	29	7.3
24	KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-as...	29	7.3
25	SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Se...	29	7.3
26	PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-b...	29	7.3
27	NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleo...	29	7.3
28	PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit ...	29	7.3
29	PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-b...	29	7.3
30	JHD1_ASHGO (Q75AL5) JmjC domain-containing histone demethylation...	28	9.6
31	CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity fact...	28	9.6
32	IF2_STRAW (Q82K53) Translation initiation factor IF-2	28	9.6
33	UBQL3_HUMAN (Q9H347) Ubiquilin-3	28	9.6
34	PG44_MYCTU (Q50630) Hypothetical PE-PGRS family protein PE_PGRS44	28	9.6
35	STML1_MOUSE (Q8CI66) Stomatin-like protein 1 (SLP-1)	28	9.6
36	IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B ...	28	9.6
37	ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V...	28	9.6
38	CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor...	28	9.6
39	CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity fa...	28	9.6
40	CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity fa...	28	9.6

>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -2

Query: 375  AAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGM 196
            ++G G VA QG       +T GFG+ P+  + P   G+P  G  +   G A   +S +G 
Sbjct: 1948 SSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFG-GVPAFGSAPAFTSPLGS 2006

Query: 195  ALG 187
              G
Sbjct: 2007 TGG 2009

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>MBN_DROME (P52302) Protein lethal(3)malignant blood neoplasm 1 (Mbn(83))|
          Length = 653

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -2

Query: 456 SSNLPFGQEPEGNGNTGVAQPTLP-LPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNS 280
           ++N P G  P   G  G+A    P  P+A G GG+ G G          G GS   +   
Sbjct: 414 TANTPTGNVPSNGG--GIAAGKAPGNPQAGGSGGIIGAGAPGGRKVSAGGIGSGSAI--- 468

Query: 279 PYDSGAPKHGCSLLGIGVALGVSSAIG 199
               G    G    G G A+G  SAIG
Sbjct: 469 ----GGVSGGSKASGNGGAIGSGSAIG 491

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>NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2|
          Length = 414

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
 Frame = -2

Query: 465 GHGSSNLPFGQEPEGNGNTGVAQPTLPL--------PEAAGFGGVAGQGHAVEDVGQTIG 310
           G GSS   F Q   G GN   +  +           P A GFG  +G        GQ  G
Sbjct: 267 GFGSS--AFAQPSSGFGNPAPSAASFSFAAADSESKPSAGGFGSASGFSFKTATAGQGSG 324

Query: 309 FGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMA 193
           FGS           G+     S  G G + G  SA G A
Sbjct: 325 FGS---------GFGSSSGFGSSSGFGSSSGFGSAFGSA 354

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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = -2

Query: 465 GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLV 289
           G G  +   GQ P  G   +G  Q         GFG  +  G  V   G + GFG     
Sbjct: 412 GRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHE-- 469

Query: 288 DNSPYDSGAPKHG 250
            +S + SG  +HG
Sbjct: 470 SSSEHSSGYTQHG 482

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>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 815

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 373 GRVRWCRWAGACS-GGRGADDWIWQPT 296
           GR  W R  G CS G RG DDW  +P+
Sbjct: 43  GRSFWARCCGCCSCGNRGDDDWGPEPS 69

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>STML1_HUMAN (Q9UBI4) Stomatin-like protein 1 (SLP-1) (Stomatin-related protein)|
           (STORP) (EPB72-like 1) (UNC24 homolog)
          Length = 398

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 395 PLCRCQKRQGSVVSLGRGMQWRTWGRRLDLXXXXXXXXXXXXAVRRSMDAACLASELR 222
           P C+   + G+V+S+G  +Q+R W   L +              + +M  A L   LR
Sbjct: 127 PPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQNAMTKALLKRPLR 184

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>ITA2B_HUMAN (P08514) Integrin alpha-IIb precursor (Platelet membrane|
           glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen)
           [Contains: Integrin alpha-IIb heavy chain; Integrin
           alpha-IIb light chain]
          Length = 1039

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = -2

Query: 459 GSSNLPFGQ-EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP-LVD 286
           GS+  P G  + +G  +  VA P         +GG +G+G  +  +GQ+ G  S+P  V 
Sbjct: 388 GSAIAPLGDLDRDGYNDIAVAAP---------YGGPSGRGQVLVFLGQSEGLRSRPSQVL 438

Query: 285 NSPYDSGAPKHGCSLLG 235
           +SP+ +G+   G SL G
Sbjct: 439 DSPFPTGS-AFGFSLRG 454

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>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC|
            2.7.11.1) (Serine/threonine-protein kinase SNF1LK)
          Length = 783

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 32/123 (26%), Positives = 41/123 (33%), Gaps = 18/123 (14%)
 Frame = +2

Query: 161  QERTHTNQRPRAMPMAELTPSATPMPSKLHPCFG---APLSYGLLSTN-GWLPNPIVXXX 328
            Q        P A P     P   P P  + PC G   APL   LL++    LP P++   
Sbjct: 658  QRLLQLQHHPAAAPGCSQAPQPAPAPFVIAPCDGPGAAPLPSTLLTSGLPLLPPPLLQTG 717

Query: 329  XXXXXXXXXXXXXXXXXGSGRVGCATPVLPLP------SGSCPKGRL--------LLPCP 466
                             G+G    A P +P P       G  P G L        L+PC 
Sbjct: 718  ASPVASAAQLLDTHLHIGTGPT--ALPAVPPPRLARLAPGCEPLGLLQGDCEMEDLMPCS 775

Query: 467  TGS 475
             G+
Sbjct: 776  LGT 778

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>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)|
           (K6e keratin) (Keratin K6h)
          Length = 563

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = -2

Query: 432 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 253
           E  G  N  V Q T+    ++G+GG +G       VG  +G G       S Y  G+   
Sbjct: 478 EGVGQVNVSVVQSTI----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518

Query: 252 GCSLLGIGVALGVSSAIGMALG 187
                G+G+  G SS+ G A+G
Sbjct: 519 -----GLGIGGGFSSSSGRAIG 535

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>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)|
           (K6d keratin) (Fragment)
          Length = 384

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 26/82 (31%), Positives = 36/82 (43%)
 Frame = -2

Query: 432 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 253
           E  G  N  V Q T+    ++G+GG +G       VG  +G G       S Y  G+   
Sbjct: 299 EGVGQVNVSVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 339

Query: 252 GCSLLGIGVALGVSSAIGMALG 187
                G+GV  G SS+ G A+G
Sbjct: 340 -----GLGVGGGFSSSSGRAIG 356

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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
 Frame = +3

Query: 198 CQWQS*HPAQLRCQASCIHASAHR-------CRMGCCPPMVGCQIQSSAPRPPLHAPA 350
           CQ  S  PA   C  SC   S+         CR  CC P+  C + +S+ +P    PA
Sbjct: 188 CQKSSCQPAC--CTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCVPASSCQPSCCHPA 243

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>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)|
           (K6c keratin)
          Length = 563

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 26/82 (31%), Positives = 36/82 (43%)
 Frame = -2

Query: 432 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 253
           E  G  N  V Q T+    ++G+GG +G       VG  +G G       S Y  G+   
Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518

Query: 252 GCSLLGIGVALGVSSAIGMALG 187
                G+GV  G SS+ G A+G
Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535

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>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)|
           (K6a keratin)
          Length = 563

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 26/82 (31%), Positives = 36/82 (43%)
 Frame = -2

Query: 432 EPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKH 253
           E  G  N  V Q T+    ++G+GG +G       VG  +G G       S Y  G+   
Sbjct: 478 EGVGQVNISVVQSTV----SSGYGGASG-------VGSGLGLGG-----GSSYSYGS--- 518

Query: 252 GCSLLGIGVALGVSSAIGMALG 187
                G+GV  G SS+ G A+G
Sbjct: 519 -----GLGVGGGFSSSSGRAIG 535

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>PG33_MYCTU (Q50615) Hypothetical PE-PGRS family protein PE_PGRS33|
          Length = 498

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 29/88 (32%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = -2

Query: 471 PVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQP- 295
           P G+G +   FG    G     VA  T      AGFGG  G G  +   G   G G +  
Sbjct: 153 PGGNGGAAGLFGNGGAGGAGGNVASGT------AGFGGAGGAGGLLYGAGGAGGAGGRAG 206

Query: 294 -LVDNSPYDSGAPKHGCSLLGIGVALGV 214
             V       GA  +G  L G G A GV
Sbjct: 207 GGVGGIGGAGGAGGNGGLLFGAGGAGGV 234

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>KAPR_MAGGR (O14448) cAMP-dependent protein kinase regulatory subunit (PKA|
           regulatory subunit)
          Length = 390

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = -2

Query: 480 FAEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFG 361
           F  P G  S+  PFG   E  G  G  QP L   EA G G
Sbjct: 6   FTSPFGANSN--PFGSPEERRGVAGSIQPVLEEEEADGIG 43

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>ITA2B_MOUSE (Q9QUM0) Integrin alpha-IIb precursor (Platelet membrane|
           glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen)
           [Contains: Integrin alpha-IIb heavy chain; Integrin
           alpha-IIb light chain]
          Length = 1033

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -2

Query: 375 AAGFGGVAGQGHAVEDVGQTIGFGSQP-LVDNSPYDSGAPKHGCSLLG 235
           AA +GG +GQG  +  +GQ+ G   +P  V +SP+ +G+   G SL G
Sbjct: 407 AAPYGGPSGQGQVLIFLGQSEGLSPRPSQVLDSPFPTGS-GFGFSLRG 453

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>FLCN_XENTR (Q5M7Q1) Folliculin|
          Length = 579

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 217 CQLCHWHGPRSLICVRAL 164
           C  C  HGPR+L C  AL
Sbjct: 8   CHFCELHGPRTLFCTEAL 25

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>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
 Frame = -2

Query: 465  GHGSSNLPFGQEP-EGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVE------------DV 325
            G+      F QEP   NG     + TLPL   AG  G A     VE            D 
Sbjct: 2635 GNDQPGPSFKQEPPSANGKGPFPRRTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDG 2694

Query: 324  GQTIGFGSQPLVDNSPYDSGA 262
            G++   G  PLV    Y  GA
Sbjct: 2695 GKSSVSGEGPLVIKRVYKGGA 2715

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>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)|
          Length = 3133

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 328 RGADDWIWQPTIGGQQPIRQRCAEAWMQLAWHRSCAGCQLCHWHGPRSLICVRALLRRC 152
           RG  D +  P +G    +   CA+  + L W  +   C+L    G +  +C  + LR+C
Sbjct: 2   RGGRDPVPVPVLGDYAMV---CAKNGIILQWRYNVKECELSCTGGQQYTVCADSCLRKC 57

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>NFKB2_HUMAN (Q00653) Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor|
           KBF2) (H2TF1) (Lymphocyte translocation chromosome 10)
           (Oncogene Lyt-10) (Lyt10) [Contains: Nuclear factor
           NF-kappa-B p52 subunit]
          Length = 899

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 23/66 (34%), Positives = 27/66 (40%)
 Frame = -2

Query: 444 PFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDNSPYDSG 265
           PFG      G +G A        A G+GG  G G        ++GF    L   SPY SG
Sbjct: 349 PFGGGSHMGGGSGGA--------AGGYGGAGGGG--------SLGFFPSSLA-YSPYQSG 391

Query: 264 APKHGC 247
           A   GC
Sbjct: 392 AGPMGC 397

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>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 31/92 (33%), Positives = 40/92 (43%)
 Frame = -2

Query: 462 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 283
           +G+ N   G +  GNG  G   P   + EA G GG  G G +++    T G G       
Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447

Query: 282 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 187
           +  D GA   G    GIG   G  SA G+A G
Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476

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>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 31/92 (33%), Positives = 40/92 (43%)
 Frame = -2

Query: 462 HGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQPLVDN 283
           +G+ N   G +  GNG  G   P   + EA G GG  G G +++    T G G       
Sbjct: 393 NGTDNSGNGNQTGGNGGPG---PAGGVGEAGGVGGQGGLGESLDGNDGTGGKGGAG--GT 447

Query: 282 SPYDSGAPKHGCSLLGIGVALGVSSAIGMALG 187
           +  D GA   G    GIG   G  SA G+A G
Sbjct: 448 AGTDGGAGGAG-GAGGIGETDG--SAGGVATG 476

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>CLCE_ARATH (Q8GX93) Chloride channel protein CLC-e (AtCLC-e)|
          Length = 710

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -2

Query: 351 GQGHAVEDVGQTIGFGSQPLVDNSPYDSGAPKHGCSLLGIGVALGVSSAIGMALGL*FVC 172
           G G+++   G ++  G+      +   + +P+ G SLL  G A G+SS    A+   F  
Sbjct: 182 GTGNSLGPEGPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFA 241

Query: 171 VRS 163
           V S
Sbjct: 242 VES 244

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>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
 Frame = +3

Query: 198 CQWQS*HPAQLRCQASCIHASAHR-------CRMGCCPPMVGCQIQSSAPRPPLHAPA 350
           CQ  S  PA   C  SC   S+         CR  CC P+  C   +S+ +P    PA
Sbjct: 340 CQQSSCQPAC--CTTSCCRPSSSVSLLCRPVCRPACCVPVPSCCAPTSSCQPSCCRPA 395

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>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema|
           III/F)
          Length = 785

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 309 IQSSAPRPPLHAPAQRHHRTLP-LLAAAEWAVLHRYCRCLLVPVQRAGCCFHAQPAPR 479
           +  SAP PP   P    ++ L  LLA  E  ++H+YC+         G   H  P+PR
Sbjct: 710 LSMSAPPPPGAGPPTPPYQELAQLLAQPEVGLIHQYCQ---------GYWRHVPPSPR 758

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>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144)
          Length = 344

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = +2

Query: 155 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 313
           TP E T+T+       +++  PS       ++ +PS   P  G+P S+G  +T+   P P
Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302

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>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
 Frame = -2

Query: 423  GNGNTGVAQPTLPLPEAAGFGGVAGQ--GHAVEDVG---------QTI---GFGSQPLVD 286
            G+ + G    T   P   GFGG  GQ  G +V   G         QT    GFG++P+  
Sbjct: 1565 GSSSGGFGSFTQTTPAQGGFGGGFGQGGGGSVAQTGFGSPQAPQQQTTTPGGFGAKPVFG 1624

Query: 285  NSPYDSGAPKHG 250
             SP    +P  G
Sbjct: 1625 GSPAFGASPTFG 1636

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>PI3R5_PIG (O02696) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase|
           regulatory subunit 5) (PI3-kinase p101 subunit)
           (PtdIns-3-kinase p101) (p101-PI3K)
           (Phosphatidylinositol-4,5-bisphosphate 3-kinase
           regulatory subunit) (PtdIns-3-kinase regulato
          Length = 877

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = +3

Query: 288 PPMVGCQIQSSAPRPPLHAPAQRHHRTLPLLAAAEWAVLHRYCRCLLVPV 437
           PP V CQ   + PRP   +PAQ     LP+LA     +L  YCR    PV
Sbjct: 627 PPEVLCQSLKAEPRPLEGSPAQ-----LPILA----DMLLYYCRFAARPV 667

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>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein|
           Mel-18) (RING finger protein 110) (Zinc finger protein
           144) (Zfp-144)
          Length = 342

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = +2

Query: 155 TPQERTHTNQRPRAMPMAELTPS-------ATPMPSKLHPCFGAPLSYGLLSTNGWLPNP 313
           TP E T+T+       +++  PS       ++ +PS   P  G+P S+G  +T+   P P
Sbjct: 243 TPSEGTNTSGASECESVSDKAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSPTP 302

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>JHD1_ASHGO (Q75AL5) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 486

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 63  LSMIETTLHNTSLADCA-RNNKKKFEKSSAPQRRKSARTQIRDRGPCQWQS*HPAQLRCQ 239
           ++  E + H T+ A  A +  +++ E    P+R  + R ++R RGP  + + +  Q    
Sbjct: 75  IAAFECSAHGTARARLALKGKRRRVEAKEEPERAGTRRYRLRKRGPLDYIALNEGQ---D 131

Query: 240 ASCIHASAHRCRMGCC 287
               H   HR     C
Sbjct: 132 VRLRHEHPHRAAFQGC 147

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>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7|
          Length = 462

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 268
           P    + N+ P A+P+  L P   P P  L   FG P
Sbjct: 210 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 246

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 24/73 (32%), Positives = 28/73 (38%)
 Frame = -2

Query: 477 AEPVGHGSSNLPFGQEPEGNGNTGVAQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFGSQ 298
           A P G    N PF       G+TG+A+P  P P  A   G AG        G     G Q
Sbjct: 207 ARPAGPRPGNNPF----TSGGSTGMARPQAPRPGGAPRPGGAGAPGGPRPQGA----GGQ 258

Query: 297 PLVDNSPYDSGAP 259
              D +P   G P
Sbjct: 259 ---DRAPRPQGGP 268

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>UBQL3_HUMAN (Q9H347) Ubiquilin-3|
          Length = 655

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 161 QERTHTNQRPRA-MPMAELTPSATPMPSKLHPCFGAP-LSYGLLS 289
           Q R   N+ P A +P    +P + P PS ++P  G P  S GLL+
Sbjct: 94  QHRAMGNECPAASVPTQGPSPGSLPQPSSIYPADGPPAFSLGLLT 138

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>PG44_MYCTU (Q50630) Hypothetical PE-PGRS family protein PE_PGRS44|
          Length = 543

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -2

Query: 468 VGHGSSNLPFGQEPEGNGNTGV---AQPTLPLPEAAGFGGVAGQGHAVEDVGQTIGFG 304
           +G G +  P G    GNG  G    A  +L      G GG  G G + EDVG T G G
Sbjct: 222 IGWGGNGGPGGFAAFGNGGAGGNGGASGSL-----FGVGGAGGVGGSSEDVGGTGGAG 274

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>STML1_MOUSE (Q8CI66) Stomatin-like protein 1 (SLP-1)|
          Length = 399

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -3

Query: 395 PLCRCQKRQGSVVSLGRGMQWRTWGRRLDLXXXXXXXXXXXXAVRRSMDAACLASELR 222
           P C+   + G+V+S+G  +Q+R W   L +                +M  A L   L+
Sbjct: 127 PPCKLASKDGAVLSVGADVQFRIWDPVLSVMAVKDLNTATRMTAHNAMTKALLRRPLQ 184

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>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B (eIF-5B)|
           (Translation initiation factor IF-2)
          Length = 1002

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 161 QERTHTNQRPRAMPMAELTPSATPMPSKLHP 253
           +ER H ++  ++ P A  TP+ATP PS   P
Sbjct: 370 EERAHVHEVAKSTPAA--TPAATPTPSSASP 398

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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
 Frame = +2

Query: 149 ATTPQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAPLSY---------------GL 283
           A   + RT   ++PRA     +  S +P PS   P    PLS+               GL
Sbjct: 342 AAAAEGRTPPARQPRAAQEPPIVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPGGGGL 401

Query: 284 LSTNGWLPNPIVXXXXXXXXXXXXXXXXXXXXGSGRVGCATPVLPLPSGSCPKGRL 451
             ++G    P                       +   G A P +P+ +   P+ R+
Sbjct: 402 PQSSGRAARPRAAVAPRVRSPPRAAAAPVVSASADAAGPAPPAVPVDAHRAPRSRM 457

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>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor|
          Length = 3301

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 23/75 (30%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
 Frame = +3

Query: 270  CRMGCCPPMVGC----QIQSSAPRPPLHAPAQRHHRTLPLLAAAEWAVLHRYC--RCLLV 431
            C  G CPP   C    Q  S   RP  + P                      C   CLL 
Sbjct: 1939 CASGPCPPHADCKDLWQTFSCTCRPGYYGPG---------------------CVDACLLN 1977

Query: 432  PVQRAGCCFHAQPAP 476
            P Q  G C H Q AP
Sbjct: 1978 PCQNQGSCRHLQGAP 1992

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>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7|
          Length = 471

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 268
           P    + N+ P A+P+  L P   P P  L   FG P
Sbjct: 219 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 255

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>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7|
           (Cleavage and polyadenylation specificity factor 59 kDa
           subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor
           Im 59-kDa subunit)
          Length = 471

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 PQERTHTNQRPRAMPMAELTPSATPMPSKLHPCFGAP 268
           P    + N+ P A+P+  L P   P P  L   FG P
Sbjct: 219 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVP 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,281,671
Number of Sequences: 219361
Number of extensions: 1834013
Number of successful extensions: 6899
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 6325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6881
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result