ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
16PGD_SHEEP (P00349) 6-phosphogluconate dehydrogenase, decarboxyl... 30 2.1
26PGD_HUMAN (P52209) 6-phosphogluconate dehydrogenase, decarboxyl... 30 2.1
3MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility... 28 4.6
4PARB2_XYLFA (Q9PHE9) Probable plasmid partitioning protein parB 28 6.0

>6PGD_SHEEP (P00349) 6-phosphogluconate dehydrogenase, decarboxylating (EC|
           1.1.1.44)
          Length = 482

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 KEAEPHESRFPSGSDAQVTSGRPCCD 276
           KEA PH      G  A+V +G PCCD
Sbjct: 146 KEAWPHIKAIFQGIAAKVGTGEPCCD 171



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>6PGD_HUMAN (P52209) 6-phosphogluconate dehydrogenase, decarboxylating (EC|
           1.1.1.44)
          Length = 482

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 199 KEAEPHESRFPSGSDAQVTSGRPCCD 276
           KEA PH      G  A+V +G PCCD
Sbjct: 146 KEAWPHIKTIFQGIAAKVGTGEPCCD 171



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>MASS1_BRARE (Q6JAN0) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1)
          Length = 6199

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 190  PILKEAEPHESRFPSGSDAQVTSGRPCCDGSES 288
            P   E +PH  R  +G+DA   SGRP   GS S
Sbjct: 1300 PSAVELQPHSRRRHAGTDALFFSGRPGAYGSIS 1332



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>PARB2_XYLFA (Q9PHE9) Probable plasmid partitioning protein parB|
          Length = 401

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 227 NRLSWGSASFKIGGIFKPILLCENTESY 144
           N L   +AS K+ G+ +PILL  N+E Y
Sbjct: 75  NTLEDLAASIKVRGVLQPILLRSNSEGY 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,166,821
Number of Sequences: 219361
Number of extensions: 799011
Number of successful extensions: 1931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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