ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14) 30 1.8
2CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14) 29 3.1
3SODM_ACIAD (Q59094) Superoxide dismutase [Mn] precursor (EC 1.15... 29 4.0

>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)|
          Length = 542

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 5   YISIQFYSRHIRNTGTGHSFHQKYWNENAAFAKPGRDTLLIKTPHGEIEIAAGS 166
           Y+++QFY+ +   + TG SF+   W+  A    P ++  ++ T  G    AAGS
Sbjct: 214 YVNVQFYNNYC--SATGSSFNFDTWDNWAKTTSPNKNVKIMFTVPGS-STAAGS 264



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>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 540

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 5   YISIQFYSRHIRNTGTGHSFHQKYWNENAAFAKPGRDTLLIKTPHGEIEIAAGS 166
           Y+++QFY+ +   + TG SF+   W+  A    P ++  ++ T  G    AAGS
Sbjct: 214 YVNVQFYNNYC--SATGSSFNFDTWDNWAKTTSPNKNVKIMFTIPGS-PTAAGS 264



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>SODM_ACIAD (Q59094) Superoxide dismutase [Mn] precursor (EC 1.15.1.1)|
          Length = 228

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 14  IQFYSRHIRNTGTGHSFHQKYWNENAAFAKPGR 112
           I  Y+  +RN G GH  H  +W   AA  K G+
Sbjct: 83  ISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQ 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,337,958
Number of Sequences: 219361
Number of extensions: 387067
Number of successful extensions: 1247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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