ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 44 0.13
2gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswel... 44 0.13
3gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell... 44 0.13
4gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 ... 44 0.13
5gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s... 44 0.13
6gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Ca... 42 0.52
7gb|AC005612.1| Homo sapiens chromosome 21, P1 clone LBL#8 (LBNL ... 40 2.0
8emb|AL163285.2|HS21C085 Homo sapiens chromosome 21 segment HS21C085 40 2.0
9emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 ... 40 2.0
10gb|U82690.1|PCU82690 Physignathus cocincinus MVZ 222159 NADH deh... 40 2.0
11emb|AL773571.1|HS87D5 Homo sapiens chromosome 21 from cosmid LL2... 40 2.0
12gb|L35673.1|HUM8DC18Z Homo sapiens (subclone H8 9_b8 from P1 35 ... 40 2.0
13dbj|AP001610.1| Homo sapiens genomic DNA, chromosome 21, clone:C... 40 2.0
14dbj|AP001609.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 2.0
15gb|AC129900.1| Ciona savignyi, clone XX-1073457K4, complete sequ... 38 8.1
16gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 38 8.1
17gb|AC137607.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.1
18gb|CP000001.1| Bacillus cereus E33L, complete genome 38 8.1
19emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chrom... 38 8.1
20emb|AL355506.23| Human DNA sequence from clone RP3-366M24 on chr... 38 8.1
21gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 38 8.1
22gb|AC111006.5| Homo sapiens BAC clone RP11-761E21 from 4, comple... 38 8.1
23gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, comple... 38 8.1
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.1
25emb|AL671906.15| Mouse DNA sequence from clone RP23-300B11 on ch... 38 8.1
26gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 38 8.1
27gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 38 8.1
28gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 38 8.1
29emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chr... 38 8.1
30emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chro... 38 8.1
31emb|AL603885.17| Human DNA sequence from clone RP11-722N5 on chr... 38 8.1
32emb|AL591071.5| Human DNA sequence from clone RP11-4J16 on chrom... 38 8.1

>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete
              sequence
          Length = 161653

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 114    acactcttctaataaaaactccccatgggg 143
              |||||||||||| |||| ||||||||||||
Sbjct: 147531 acactcttctaacaaaacctccccatgggg 147560



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>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175481

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 137   catggggaaattgaaattgctg 158
             ||||||||||||||||||||||
Sbjct: 58669 catggggaaattgaaattgctg 58690



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>gb|AC091128.2| Drosophila melanogaster 3L BAC RP98-17O7 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170465

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 137    catggggaaattgaaattgctg 158
              ||||||||||||||||||||||
Sbjct: 159196 catggggaaattgaaattgctg 159217



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>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete
             sequence
          Length = 302131

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 137   catggggaaattgaaattgctg 158
             ||||||||||||||||||||||
Sbjct: 45411 catggggaaattgaaattgctg 45432



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>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230),
              DS03404 (D231), DS06962 (D232), and DS07291 (D240)),
              complete sequence
          Length = 268369

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 137    catggggaaattgaaattgctg 158
              ||||||||||||||||||||||
Sbjct: 166997 catggggaaattgaaattgctg 166976



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>gb|AC025035.15| Homo sapiens 12 BAC RP11-121E16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165440

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   ggaaattgaaattgctgcagg 162
             |||||||||||||||||||||
Sbjct: 10204 ggaaattgaaattgctgcagg 10184



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>gb|AC005612.1| Homo sapiens chromosome 21, P1 clone LBL#8 (LBNL H8), complete sequence
          Length = 60904

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tggggaaattgaaattgctg 158
             ||||||||||||||||||||
Sbjct: 49003 tggggaaattgaaattgctg 48984



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>emb|AL163285.2|HS21C085 Homo sapiens chromosome 21 segment HS21C085
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    tggggaaattgaaattgctg 158
              ||||||||||||||||||||
Sbjct: 269355 tggggaaattgaaattgctg 269336



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>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3,
              complete sequence
          Length = 212865

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    tggggaaattgaaattgctg 158
              ||||||||||||||||||||
Sbjct: 131318 tggggaaattgaaattgctg 131299



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>gb|U82690.1|PCU82690 Physignathus cocincinus MVZ 222159 NADH dehydrogenase subunit 1
           (ND1), partial cds, tRNA-Gln, tRNA-Ile and tRNA-Met,
           NADH dehydrogenase subunit 2 (ND2), complete cds,
           tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys and tRNA-Tyr and
           cytochrome c oxidase subunit I (COI), partial cds,
           mitochondrial genes encoding mitochondrial products
          Length = 1706

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 139 tggggaaattgaaattgctg 158
           ||||||||||||||||||||
Sbjct: 893 tggggaaattgaaattgctg 874



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>emb|AL773571.1|HS87D5 Homo sapiens chromosome 21 from cosmid LL21NC02-87D5 map
            21q22.2,D21S349-MX1, complete sequence
          Length = 43003

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  tggggaaattgaaattgctg 158
            ||||||||||||||||||||
Sbjct: 9906 tggggaaattgaaattgctg 9887



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>gb|L35673.1|HUM8DC18Z Homo sapiens (subclone H8 9_b8 from P1 35 H5 C8) DNA sequence
          Length = 3435

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  tggggaaattgaaattgctg 158
            ||||||||||||||||||||
Sbjct: 2195 tggggaaattgaaattgctg 2176



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>dbj|AP001610.1| Homo sapiens genomic DNA, chromosome 21, clone:CIT2533B8, MX1-D21S171
             region, complete sequence
          Length = 132110

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tggggaaattgaaattgctg 158
             ||||||||||||||||||||
Sbjct: 27573 tggggaaattgaaattgctg 27554



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>dbj|AP001609.1| Homo sapiens genomic DNA, chromosome 21, clone:KB447A5, MX1-D21S171
             region, complete sequence
          Length = 108927

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tggggaaattgaaattgctg 158
             ||||||||||||||||||||
Sbjct: 63578 tggggaaattgaaattgctg 63559



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>gb|AC129900.1| Ciona savignyi, clone XX-1073457K4, complete sequence
          Length = 38504

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    acactggaacgggacattc 60
             |||||||||||||||||||
Sbjct: 26655 acactggaacgggacattc 26673



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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      cgggacattcgttccacca 69
               |||||||||||||||||||
Sbjct: 4325097 cgggacattcgttccacca 4325115



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>gb|AC137607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0006O14, complete sequence
          Length = 142764

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   caggacgtgacactcttct 123
             |||||||||||||||||||
Sbjct: 99583 caggacgtgacactcttct 99565



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      cgggacattcgttccacca 69
               |||||||||||||||||||
Sbjct: 4384473 cgggacattcgttccacca 4384491



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>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26
           Contains the 3' end of the SSLC22A3 gene for solute
           carrier family 22 (extraneuronal monoamine transporter),
           member 3 (extraneuronal monoamine transporter solute
           carrier family 22 (organic cation transporter), member
           3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein
           (a) related gene C and a plasminogen (PLG) pseudogene,
           complete sequence
          Length = 162083

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 114 acactcttctaataaaaac 132
           |||||||||||||||||||
Sbjct: 835 acactcttctaataaaaac 817



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>emb|AL355506.23| Human DNA sequence from clone RP3-366M24 on chromosome 6q25.3-26
            Contains the 5' end of the SLC22A3 gene for solute
            carrier family 22 (extraneuronal monoamine transporter),
            member 3 (extraneuronal monoamine transporter solute
            carrier family 22 (organic cation transporter), member 3
            (EMT, EMTh, OCT3)) and a CpG island, complete sequence
          Length = 82919

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 114  acactcttctaataaaaac 132
            |||||||||||||||||||
Sbjct: 8516 acactcttctaataaaaac 8534



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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 7       tatcagtatccaattttattctc 29
               |||||||||| ||||||||||||
Sbjct: 1819488 tatcagtatcaaattttattctc 1819510



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>gb|AC111006.5| Homo sapiens BAC clone RP11-761E21 from 4, complete sequence
          Length = 123019

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    agtatccaattttattctc 29
             |||||||||||||||||||
Sbjct: 65412 agtatccaattttattctc 65394



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>gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, complete sequence
          Length = 171846

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 143    gaaattgaaattgctgcag 161
              |||||||||||||||||||
Sbjct: 121359 gaaattgaaattgctgcag 121377



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 105      caggacgtgacactcttct 123
                |||||||||||||||||||
Sbjct: 10316018 caggacgtgacactcttct 10316000



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>emb|AL671906.15| Mouse DNA sequence from clone RP23-300B11 on chromosome X, complete
            sequence
          Length = 216692

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 113  gacactcttctaataaaaa 131
            |||||||||||||||||||
Sbjct: 5770 gacactcttctaataaaaa 5752



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      cgggacattcgttccacca 69
               |||||||||||||||||||
Sbjct: 4472290 cgggacattcgttccacca 4472308



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 51      cgggacattcgttccacca 69
               |||||||||||||||||||
Sbjct: 4310387 cgggacattcgttccacca 4310405



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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 130    aactccccatggggaaatt 148
              |||||||||||||||||||
Sbjct: 895608 aactccccatggggaaatt 895626



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>emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chromosome 4, complete
             sequence
          Length = 160681

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    agtatccaattttattctc 29
             |||||||||||||||||||
Sbjct: 55924 agtatccaattttattctc 55942



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>emb|AL928925.6| Mouse DNA sequence from clone RP23-405K7 on chromosome 2, complete
            sequence
          Length = 145382

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 115  cactcttctaataaaaact 133
            |||||||||||||||||||
Sbjct: 6856 cactcttctaataaaaact 6874



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>emb|AL603885.17| Human DNA sequence from clone RP11-722N5 on chromosome 6, complete
            sequence
          Length = 67762

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 114  acactcttctaataaaaac 132
            |||||||||||||||||||
Sbjct: 1166 acactcttctaataaaaac 1184



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>emb|AL591071.5| Human DNA sequence from clone RP11-4J16 on chromosome 6, complete
             sequence
          Length = 13437

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   acactcttctaataaaaac 132
             |||||||||||||||||||
Sbjct: 12272 acactcttctaataaaaac 12254


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,439,545
Number of Sequences: 3902068
Number of extensions: 1439545
Number of successful extensions: 82826
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82398
Number of HSP's gapped (non-prelim): 428
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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