ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP107_MOUSE (Q8BUV8) Protein GPR107 precursor 37 0.026
2GP107_HUMAN (Q5VW38) Protein GPR107 precursor (Lung seven transm... 37 0.026
3GP108_RAT (Q6P6V6) Protein GPR108 precursor 35 0.10
4GP108_MOUSE (Q91WD0) Protein GPR108 precursor (Lung seven transm... 35 0.10
5GP108_HUMAN (Q9NPR9) Protein GPR108 precursor 35 0.10
6Y6610_BACAN (Q9RMV5) Hypothetical protein pXO2-80/BXB0110/GBAA_p... 33 0.38

>GP107_MOUSE (Q8BUV8) Protein GPR107 precursor|
          Length = 551

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 460 EIATLAFYVFTGYRFRPEVHNPY 392
           E ATL F+V TGY+FRP   NPY
Sbjct: 483 ETATLVFFVLTGYKFRPASDNPY 505



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>GP107_HUMAN (Q5VW38) Protein GPR107 precursor (Lung seven transmembrane|
           receptor 1)
          Length = 600

 Score = 37.0 bits (84), Expect = 0.026
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -1

Query: 460 EIATLAFYVFTGYRFRPEVHNPY 392
           E ATL F+V TGY+FRP   NPY
Sbjct: 532 ETATLVFFVLTGYKFRPASDNPY 554



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>GP108_RAT (Q6P6V6) Protein GPR108 precursor|
          Length = 577

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1

Query: 460 EIATLAFYVFTGYRFRPEVHNPY 392
           E +TLAF+V TGY+F+P   NPY
Sbjct: 515 ESSTLAFFVLTGYKFQPAGDNPY 537



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>GP108_MOUSE (Q91WD0) Protein GPR108 precursor (Lung seven transmembrane|
           receptor 2)
          Length = 569

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1

Query: 460 EIATLAFYVFTGYRFRPEVHNPY 392
           E +TLAF+V TGY+F+P   NPY
Sbjct: 508 ESSTLAFFVLTGYKFQPAGDNPY 530



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>GP108_HUMAN (Q9NPR9) Protein GPR108 precursor|
          Length = 543

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = -1

Query: 460 EIATLAFYVFTGYRFRPEVHNPY 392
           E +TLAF+V TGY+F+P  +NPY
Sbjct: 482 EGSTLAFFVLTGYKFQPTGNNPY 504



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>Y6610_BACAN (Q9RMV5) Hypothetical protein pXO2-80/BXB0110/GBAA_pXO2_0110|
          Length = 328

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 313 KFGGLFPASATQVLYCASTGKMLSQD 236
           ++ GL+P +   V+YC STGK L QD
Sbjct: 157 EYQGLYPINEDMVIYCESTGKPLQQD 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,928,355
Number of Sequences: 219361
Number of extensions: 1120610
Number of successful extensions: 2340
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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