ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20b01 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 263 bits (672), Expect = 2e-70 Identities = 121/139 (87%), Positives = 134/139 (96%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 RETPAIDVC+GLLGDKA +SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQPTSP++VK+VS Sbjct: 342 RETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVS 401 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 VVWDAYEATK AH +CILTEW+EFK LDYQKIF+NMQKPAFVFDGRN+V+ADKLREIGFI Sbjct: 402 VVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFI 461 Query: 148 VYSIGKPLDAWLKDMPAIA 92 VYSIGKPLD WLKDMPA+A Sbjct: 462 VYSIGKPLDPWLKDMPAVA 480
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 105 bits (263), Expect = 5e-23 Identities = 56/127 (44%), Positives = 83/127 (65%), Gaps = 1/127 (0%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQ-V 332 RET AI VC+ LL + A + IYDP+V +QI DL HP + SP VK+ V Sbjct: 342 RETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAV 392 Query: 331 SVVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGF 152 + D Y A + HA+ I TEW+EF +LD+++I+ +M KPA++FDGR +++ ++L++IGF Sbjct: 393 QIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGF 452 Query: 151 IVYSIGK 131 V +IGK Sbjct: 453 HVQTIGK 459
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 103 bits (256), Expect = 3e-22 Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQ-V 332 RE+ AI V K L+ + A++S+YDP+V + Q+ DLA TS V++ + Sbjct: 353 RESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLA------------SVTSAQDVERLI 400 Query: 331 SVVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGF 152 +V D Y A +GAHA+ +LTEW+EF EL+Y +I N+MQ PA +FDGR +++ LREIGF Sbjct: 401 TVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGF 460 Query: 151 IVYSIGKPLD 122 ++IG D Sbjct: 461 RTFAIGTSPD 470
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 96.7 bits (239), Expect = 3e-20 Identities = 56/132 (42%), Positives = 82/132 (62%), Gaps = 2/132 (1%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 RE+ +I + K L+ + A + IYDP+V +QI DL+ HP + S + V+ Sbjct: 346 RESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSEDDQVSRL--VT 396 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIG 155 + D YEA GAHAV I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IG Sbjct: 397 ISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIG 456 Query: 154 FIVYSIGKPLDA 119 F + +IGK + + Sbjct: 457 FQIETIGKKVSS 468
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 95.5 bits (236), Expect = 7e-20 Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 RE+ +I + K L+ + A + IYDP+V +QI DL+ D + + V+ Sbjct: 346 RESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVT 396 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIG 155 + D YEA GAHAV I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IG Sbjct: 397 ISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIG 456 Query: 154 FIVYSIGKPLDA 119 F + +IGK + + Sbjct: 457 FQIETIGKKVSS 468
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 94.4 bits (233), Expect = 2e-19 Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 RE+ +I + K L+ + A + IYDP+V +QI DL+ HP S + V+ Sbjct: 346 RESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSADDQVSRL--VT 396 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIG 155 + D YEA GAHA+ I TEW+ FKELDY++I M KPAF+FDGR V++ ++L+ IG Sbjct: 397 ISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIG 456 Query: 154 FIVYSIGKPLDA 119 F + +IGK + + Sbjct: 457 FQIETIGKKVSS 468
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 94.0 bits (232), Expect = 2e-19 Identities = 55/132 (41%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 RE+ +I + K L+ + A + IYDP+V +QI DL+ HP S + V+ Sbjct: 346 RESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSADDQVSRL--VT 396 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNA--DKLREIG 155 + D YEA GAHA+ I TEW+ FKELDY++I M KPAF+FDGR V++ +L+ IG Sbjct: 397 ISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIG 456 Query: 154 FIVYSIGKPLDA 119 F + +IGK + + Sbjct: 457 FQIETIGKKVSS 468
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 62.8 bits (151), Expect = 5e-10 Identities = 40/127 (31%), Positives = 64/127 (50%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 R++PAI V + L A+V+ YDP+ E+ + ++ + Sbjct: 333 RDSPAIAVVQALQDAGARVTGYDPEGMEN----------------------ARKLIEGLD 370 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 D YEA A A+ I+TEWNEF+ LD+ ++ + M+ P V D RN+ D++ + GF Sbjct: 371 CARDPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFR 429 Query: 148 VYSIGKP 128 SIG+P Sbjct: 430 YASIGRP 436
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 60.5 bits (145), Expect = 3e-09 Identities = 38/128 (29%), Positives = 65/128 (50%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 R +PAI++ LL V +DP E+ K + +H K + Sbjct: 328 RASPAIEIITILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLL 367 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 A EA K + I TEW+EFKEL++Q+I+N ++ P + D RN+++ + +++IGF Sbjct: 368 YFASAVEACKSVDIIVIATEWSEFKELNWQEIYNLVKSP-MIIDLRNILDNEVMKKIGFR 426 Query: 148 VYSIGKPL 125 Y++G + Sbjct: 427 YYAVGSQI 434
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 59.3 bits (142), Expect = 6e-09 Identities = 37/128 (28%), Positives = 66/128 (51%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 R +PAI + K LL V +DP E+ K + +H K + Sbjct: 326 RASPAIAIVKILLNKDVYVKAFDPIGLENA--------KKNLEH------------KNLL 365 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 + A +A K + I TEW+EFKEL++Q+I++ ++ P + D RN+++ + +++IGF Sbjct: 366 YLDSAVDACKSVDIIVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFR 424 Query: 148 VYSIGKPL 125 Y++G + Sbjct: 425 YYAVGSKI 432
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 59.3 bits (142), Expect = 6e-09 Identities = 27/62 (43%), Positives = 42/62 (67%) Frame = -1 Query: 313 YEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFIVYSIG 134 Y A +GA A+ ++TEW +F++ D+QKI +M+ P V DGRN+ ++ E+GFI IG Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441 Query: 133 KP 128 +P Sbjct: 442 RP 443
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 56.6 bits (135), Expect = 4e-08 Identities = 36/127 (28%), Positives = 59/127 (46%) Frame = -1 Query: 508 RETPAIDVCKGLLGDKAQVSIYDPQVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVS 329 R PA+D+ L A V YDP + + S +QV Sbjct: 328 RSAPALDIIPMLQQLGAHVKAYDP---------------------IAIPEASAILGEQVE 366 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 D Y A + A ILT+W E KE++ K+ +++P + DGRN+ + ++++ G+I Sbjct: 367 YYTDVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPV-IIDGRNLFSLEEMQAAGYI 425 Query: 148 VYSIGKP 128 +SIG+P Sbjct: 426 YHSIGRP 432
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/66 (36%), Positives = 42/66 (63%) Frame = -1 Query: 328 VVWDAYEATKGAHAVCILTEWNEFKELDYQKIFNNMQKPAFVFDGRNVVNADKLREIGFI 149 V+ D YE K + I E+ +F + D++KI N+ K VFDGRN+++ +K++++GF Sbjct: 832 VLDDLYETVKNVDGIIITVEY-DFNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFK 889 Query: 148 VYSIGK 131 Y +G+ Sbjct: 890 YYGVGR 895
>HLDD_FUSNN (Q8RIA5) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)| (ADP-L-glycero-beta-D-manno-heptose-6-epimerase) (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep 6-epimerase) (AGME) Length = 332 Score = 34.7 bits (78), Expect = 0.15 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Frame = -1 Query: 445 YDPQVTEDQIQRDLAMNKF--------DWDHPMHLQPTSPSSVKQVSVVWDAYEATKGAH 290 Y+ V+ +++Q+ + +NK+ DW QP + +K +V + E KG Sbjct: 127 YNDDVSPEELQKLMPLNKYGYSKKFFDDWAFKQKNQPKQWNGLKFFNV-YGPQEYHKGRM 185 Query: 289 AVCILTEWNEFKELDYQKIFNNMQK 215 A + +N++KE Y K+F + ++ Sbjct: 186 ASMVFHTYNQYKENGYVKLFKSYKE 210
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -3 Query: 440 SPGHRGPD----PAGPRHEQVRLGPPNAPAA 360 SPG GPD P GP + R GPP P A Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 573
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3| (EC 2.7.11.1) Length = 1309 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 425 GPDPAGPRHEQVRLGPPNAPAADEPII 345 GP PAGP+ LG P+ P A P++ Sbjct: 799 GPGPAGPKRPVFILGEPDPPPAATPVM 825
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -3 Query: 437 PGHRGPDPAGPRHEQVRLGPPNAPAADEP 351 P GP P GP R PP P ADEP Sbjct: 398 PPPPGPPPPGPAPPGARPPPPPPPPADEP 426
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -3 Query: 440 SPGHRGPD----PAGPRHEQVRLGPPNAPAA 360 SPG GPD P GP + R GPP P A Sbjct: 539 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGA 569
>CBP2_HORVU (P08818) Serine carboxypeptidase 2 precursor (EC 3.4.16.6) (Serine| carboxypeptidase II) (Carboxypeptidase D) (CP-MII) [Contains: Serine carboxypeptidase 2 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 2 chain B (Serine Length = 476 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = -3 Query: 155 LHCLLHRQAARCVAQGHARDRLVPL 81 L CLL R AA A GHA DR+V L Sbjct: 22 LTCLLLRPAAVAAAGGHAADRIVRL 46
>AAP1_YEAST (P37898) Alanine/arginine aminopeptidase (EC 3.4.11.-)| Length = 856 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/57 (22%), Positives = 29/57 (50%) Frame = -1 Query: 436 QVTEDQIQRDLAMNKFDWDHPMHLQPTSPSSVKQVSVVWDAYEATKGAHAVCILTEW 266 Q D +QR L ++ HP+ + + + Q ++DA +KG+ + ++++W Sbjct: 346 QYVTDNLQRALNLDSLRSSHPIEVPVNNADEINQ---IFDAISYSKGSSLLRMISKW 399
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = -3 Query: 437 PGHRGP-DPAGPRHEQVRLGPPNAPAA 360 PG RGP D GP ++ GPP +PAA Sbjct: 910 PGSRGPRDGLGPEPQEPPPGPPPSPAA 936
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 28.9 bits (63), Expect = 8.3 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Frame = -1 Query: 364 QPTSPSSV----KQVSVVWDAYEATKGAHAVCILTEWNEFKEL----DYQKIFNNMQKPA 209 +P P S+ ++ ++ A EA + AV E KE+ DY +I +Q Sbjct: 655 RPRLPKSIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDYLEI-QPIQNNE 713 Query: 208 FVFDGRNVVNADKLREIGFIVYSIGKPLD 122 F+ NV + ++LRE+ +Y +GK +D Sbjct: 714 FLIRKGNVKDEEELRELNRKIYDLGKEMD 742 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,396,475 Number of Sequences: 219361 Number of extensions: 1243767 Number of successful extensions: 4439 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4423 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
