ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 178 1e-41
2gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 178 1e-41
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
4dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
5gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
6gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
9dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
11gb|AY022892.1| Oryza sativa microsatellite MRG5217 containing (C... 68 3e-08
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
14emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb... 68 3e-08
15ref|NM_192258.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
17dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
18dbj|AK067056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
19gb|AY106005.1| Zea mays PCO080741 mRNA sequence 48 0.028
20emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete ... 42 1.7
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
23dbj|AK119339.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
24ref|XM_478511.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
25gb|AC162869.3| Mus musculus chromosome 1, clone RP24-309N24, com... 40 6.9
26ref|XM_663204.1| Cryptosporidium hominis TU502 hypothetical prot... 40 6.9
27emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 6.9
28gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 6.9
29gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, compl... 40 6.9
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
31gb|AC005237.2|AC005237 Homo sapiens BAC clone RP11-556H17 from 2... 40 6.9
32gb|AC007742.4|AC007742 Homo sapiens BAC clone RP11-357E16 from Y... 40 6.9
33gb|AC024183.4|AC024183 Homo sapiens BAC clone RP11-268K13 from Y... 40 6.9
34dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
35dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 6.9
36dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
37dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
38ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5... 40 6.9
39dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
40gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, com... 40 6.9
41dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  178 bits (90), Expect = 1e-41
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 364      ttttaccgggagaagacggggctgagggttttggagaacccgcggagcgtgccgtagccg 423
                ||||||||||||||||||||| |||||||||| | ||| ||| |||||| |||||| |||
Sbjct: 10665465 ttttaccgggagaagacggggttgagggtttttgtgaagccgtggagcgcgccgtaaccg 10665406

                                                                            
Query: 424      cgggagctgaagcccaggcagccgaggacgccctgccggtacggcaggaacgtccgccgc 483
                |||||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||
Sbjct: 10665405 cgggagctgaagccgaggcagccgaggaggccctgccggtaggggaggaacgtgcgccgc 10665346

                                      
Query: 484      cgcatctcctccgcttgcgccc 505
                |||||||||||||| |||||||
Sbjct: 10665345 cgcatctcctccgcctgcgccc 10665324
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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score =  178 bits (90), Expect = 1e-41
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                         
Query: 364   ttttaccgggagaagacggggctgagggttttggagaacccgcggagcgtgccgtagccg 423
             ||||||||||||||||||||| |||||||||| | ||| ||| |||||| |||||| |||
Sbjct: 82379 ttttaccgggagaagacggggttgagggtttttgtgaagccgtggagcgcgccgtaaccg 82320

                                                                         
Query: 424   cgggagctgaagcccaggcagccgaggacgccctgccggtacggcaggaacgtccgccgc 483
             |||||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||
Sbjct: 82319 cgggagctgaagccgaggcagccgaggaggccctgccggtaggggaggaacgtgcgccgc 82260

                                   
Query: 484   cgcatctcctccgcttgcgccc 505
             |||||||||||||| |||||||
Sbjct: 82259 cgcatctcctccgcctgcgccc 82238
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  178 bits (90), Expect = 1e-41
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 364      ttttaccgggagaagacggggctgagggttttggagaacccgcggagcgtgccgtagccg 423
                ||||||||||||||||||||| |||||||||| | ||| ||| |||||| |||||| |||
Sbjct: 10663566 ttttaccgggagaagacggggttgagggtttttgtgaagccgtggagcgcgccgtaaccg 10663507

                                                                            
Query: 424      cgggagctgaagcccaggcagccgaggacgccctgccggtacggcaggaacgtccgccgc 483
                |||||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||
Sbjct: 10663506 cgggagctgaagccgaggcagccgaggaggccctgccggtaggggaggaacgtgcgccgc 10663447

                                      
Query: 484      cgcatctcctccgcttgcgccc 505
                |||||||||||||| |||||||
Sbjct: 10663446 cgcatctcctccgcctgcgccc 10663425
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>dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F02, full
            insert sequence
          Length = 1575

 Score =  178 bits (90), Expect = 1e-41
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                        
Query: 364  ttttaccgggagaagacggggctgagggttttggagaacccgcggagcgtgccgtagccg 423
            ||||||||||||||||||||| |||||||||| | ||| ||| |||||| |||||| |||
Sbjct: 1149 ttttaccgggagaagacggggttgagggtttttgtgaagccgtggagcgcgccgtaaccg 1090

                                                                        
Query: 424  cgggagctgaagcccaggcagccgaggacgccctgccggtacggcaggaacgtccgccgc 483
            |||||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||
Sbjct: 1089 cgggagctgaagccgaggcagccgaggaggccctgccggtaggggaggaacgtgcgccgc 1030

                                  
Query: 484  cgcatctcctccgcttgcgccc 505
            |||||||||||||| |||||||
Sbjct: 1029 cgcatctcctccgcctgcgccc 1008
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>gb|AC134922.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0004D06, complete sequence
          Length = 157547

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                  
Query: 454   ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
             |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 30235 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 30183
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>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0076M06, complete sequence
          Length = 133581

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                   
Query: 454    ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
              |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 130052 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 130000
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                     
Query: 454      ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
                |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 26328403 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 26328351
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>dbj|AK106728.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H07, full
            insert sequence
          Length = 2386

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                 
Query: 454  ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
            |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 1198 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 1250
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>dbj|AK105350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A05, full
           insert sequence
          Length = 1300

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 454 ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
           |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 959 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 907
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                     
Query: 454      ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcgccct 506
                |||||||||||||||||| ||||||||||||||||||||||||| | ||||||
Sbjct: 26642661 ccctgccggtacggcaggtacgtccgccgccgcatctcctccgcctccgccct 26642609
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>gb|AY022892.1| Oryza sativa microsatellite MRG5217 containing (CGG)X9, genomic
           sequence
          Length = 227

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 454 ccctgccggtacggcaggaacgtccgccgccgcatctcctcc 495
           |||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 172 ccctgctggtacggcaggaacgtgcgccgccgcatctcctcc 213
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 454      ccctgccggtacggcaggaacgtccgccgccgcatctcctcc 495
                |||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 22705476 ccctgctggtacggcaggaacgtgcgccgccgcatctcctcc 22705435
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 454      ccctgccggtacggcaggaacgtccgccgccgcatctcctcc 495
                |||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 22633667 ccctgctggtacggcaggaacgtgcgccgccgcatctcctcc 22633626
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>emb|AL928745.3|CNS08CBI Oryza sativa chromosome 12, . BAC OSJNBb0092G12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131603

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 454   ccctgccggtacggcaggaacgtccgccgccgcatctcctcc 495
             |||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 17326 ccctgctggtacggcaggaacgtgcgccgccgcatctcctcc 17285
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>ref|NM_192258.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 747

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 455 cctgccggtacggcaggaacgtccgccgc 483
           |||| ||||||||||||||||||||||||
Sbjct: 685 cctggcggtacggcaggaacgtccgccgc 657
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 455      cctgccggtacggcaggaacgtccgccgc 483
                |||| ||||||||||||||||||||||||
Sbjct: 25676084 cctggcggtacggcaggaacgtccgccgc 25676056



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 307     ctcttcttttgctctctgcttttc 330
               ||||||||||||||||| ||||||
Sbjct: 1616530 ctcttcttttgctctcttcttttc 1616553



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 307     ctcttcttttgctctctgcttttc 330
               ||||||||||||||||| ||||||
Sbjct: 1609229 ctcttcttttgctctcttcttttc 1609252
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>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0004A09
          Length = 158826

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 455    cctgccggtacggcaggaacgtccgccgc 483
              |||| ||||||||||||||||||||||||
Sbjct: 122890 cctggcggtacggcaggaacgtccgccgc 122862
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>dbj|AK067056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088M21, full
           insert sequence
          Length = 1294

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 455 cctgccggtacggcaggaacgtccgccgc 483
           |||| ||||||||||||||||||||||||
Sbjct: 807 cctggcggtacggcaggaacgtccgccgc 779
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>gb|AY106005.1| Zea mays PCO080741 mRNA sequence
          Length = 360

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 455 cctgccggtacggcaggaacgtccgccg 482
           |||||||||||||||||||||| |||||
Sbjct: 42  cctgccggtacggcaggaacgtgcgccg 15
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>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10
          Length = 348950

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 413    tgccgtagccgcgggagctga 433
              |||||||||||||||||||||
Sbjct: 291809 tgccgtagccgcgggagctga 291789
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 454      ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcg 502
                ||||||||||| |||||| ||| ||||| |  |||||||||||| ||||
Sbjct: 35853929 ccctgccggtatggcaggtacggccgcccctacatctcctccgcctgcg 35853881
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>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 454   ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcg 502
             ||||||||||| |||||| ||| ||||| |  |||||||||||| ||||
Sbjct: 44475 ccctgccggtatggcaggtacggccgcccctacatctcctccgcctgcg 44427
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>dbj|AK119339.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D05, full
           insert sequence
          Length = 2622

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 454 ccctgccggtacggcaggaacgtccgccgccgcatctcctccgcttgcg 502
           ||||||||||| |||||| ||| ||||| |  |||||||||||| ||||
Sbjct: 929 ccctgccggtatggcaggtacggccgcccctacatctcctccgcctgcg 977
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>ref|XM_478511.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 477 ccgccgccgcatctcctccgcttgcgcc 504
           ||||| |||||||||||||||| |||||
Sbjct: 49  ccgcctccgcatctcctccgctcgcgcc 22
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>gb|AC162869.3| Mus musculus chromosome 1, clone RP24-309N24, complete sequence
          Length = 169330

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gtggtggtgttttttgcttt 90
             ||||||||||||||||||||
Sbjct: 51148 gtggtggtgttttttgcttt 51167
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>ref|XM_663204.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30062)
           partial mRNA
          Length = 996

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 263 acttactaattttgttaatt 282
           ||||||||||||||||||||
Sbjct: 669 acttactaattttgttaatt 688
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    acttctgacaaccactaccaatac 149
              |||||||||| |||||||||||||
Sbjct: 876587 acttctgacagccactaccaatac 876610
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 344     tttctcgagtgcctttttactttt 367
               |||| |||||||||||||||||||
Sbjct: 2436194 tttcgcgagtgcctttttactttt 2436171
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>gb|AC154393.8| Mus musculus chromosome 1, clone RP23-64O1, complete sequence
          Length = 253733

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 307   ctcttcttttgctctctgcttttc 330
             |||| |||||||||||||||||||
Sbjct: 66124 ctctgcttttgctctctgcttttc 66101
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 476      tccgccgccgcatctcctcc 495
                ||||||||||||||||||||
Sbjct: 29353562 tccgccgccgcatctcctcc 29353543



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 477      ccgccgccgcatctcctccgcttgcgcc 504
                ||||| |||||||||||||||| |||||
Sbjct: 20667122 ccgcctccgcatctcctccgctcgcgcc 20667095
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>gb|AC005237.2|AC005237 Homo sapiens BAC clone RP11-556H17 from 2, complete sequence
          Length = 175179

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gacggggctgagggttttgg 397
              ||||||||||||||||||||
Sbjct: 109452 gacggggctgagggttttgg 109433
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>gb|AC007742.4|AC007742 Homo sapiens BAC clone RP11-357E16 from Y, complete sequence
          Length = 199174

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     aaaaatagcataatgtggtggtgt 80
              |||||||||| |||||||||||||
Sbjct: 189126 aaaaatagcagaatgtggtggtgt 189103
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>gb|AC024183.4|AC024183 Homo sapiens BAC clone RP11-268K13 from Y, complete sequence
          Length = 163495

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    aaaaatagcataatgtggtggtgt 80
             |||||||||| |||||||||||||
Sbjct: 15996 aaaaatagcagaatgtggtggtgt 16019
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    tccgccgccgcatctcctcc 495
              ||||||||||||||||||||
Sbjct: 142251 tccgccgccgcatctcctcc 142232
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 126    acttctgacaaccactaccaatac 149
              |||||||||| |||||||||||||
Sbjct: 939943 acttctgacagccactaccaatac 939966
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>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408F06
          Length = 137462

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   ctcttcttttgctctctgcttttc 330
             ||||||||||||||||| ||||||
Sbjct: 53761 ctcttcttttgctctcttcttttc 53784



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   ctcttcttttgctctctgcttttc 330
             ||||||||||||||||| ||||||
Sbjct: 46460 ctcttcttttgctctcttcttttc 46483
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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0681F05
          Length = 144741

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 477   ccgccgccgcatctcctccgcttgcgcc 504
             ||||| |||||||||||||||| |||||
Sbjct: 19872 ccgcctccgcatctcctccgctcgcgcc 19845
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>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     aaaaatagcataatgtggtggtgt 80
              |||||||||| |||||||||||||
Sbjct: 577129 aaaaatagcagaatgtggtggtgt 577152



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 57     aaaaatagcataatgtggtggtgt 80
              |||||||||| |||||||||||||
Sbjct: 296691 aaaaatagcagaatgtggtggtgt 296668
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tccgccgccgcatctcctcc 495
             ||||||||||||||||||||
Sbjct: 16484 tccgccgccgcatctcctcc 16465
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>gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, complete sequence
          Length = 168704

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ttcttttgctctctgctttt 329
             ||||||||||||||||||||
Sbjct: 22894 ttcttttgctctctgctttt 22875
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>dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681N23, complete
              sequence
          Length = 185603

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    ctcacgctcactgcctctat 195
              ||||||||||||||||||||
Sbjct: 170388 ctcacgctcactgcctctat 170407


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,518,605
Number of Sequences: 3902068
Number of extensions: 4518605
Number of successful extensions: 85812
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85336
Number of HSP's gapped (non-prelim): 476
length of query: 506
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 484
effective length of database: 17,147,199,772
effective search space: 8299244689648
effective search space used: 8299244689648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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