ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart20a11 |
|---|---|
| Clone Library Name | barley_pub |
>TINF2_HUMAN (Q9BSI4) TERF1-interacting nuclear factor 2 (TRF1-interacting| nuclear protein 2) Length = 451 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/66 (33%), Positives = 27/66 (40%) Frame = -2 Query: 472 PGTRGSSGR*EPARGGGRSKPAQLARRHLERGPAGRCRVRRVASSWFSTQ*LGESLPVAE 293 P + G P R+ P LA RH P GR RRV S W ST+ + P Sbjct: 230 PLPKAKPGTHLPQGPSSRTHPEPLAGRHFNLAPLGR---RRVQSQWASTRGGHKERPTVM 286 Query: 292 *YRHRN 275 + RN Sbjct: 287 LFPFRN 292
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/37 (45%), Positives = 21/37 (56%) Frame = -2 Query: 439 PARGGGRSKPAQLARRHLERGPAGRCRVRRVASSWFS 329 PA GR KP+ + + RGP+GR R R V SW S Sbjct: 2753 PAECCGRCKPSPASWKG-GRGPSGRARERPVGESWTS 2788
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 30.0 bits (66), Expect = 3.2 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = +2 Query: 335 PGRSDATNPTTTSWTSFKMPPSQLRRFASPSAPCWFSSPAAAPG 466 P RS +P TT T K S R FASPSA SS +PG Sbjct: 784 PPRSSPASPATTPRTVPKKTASIRREFASPSAS---SSSCPSPG 824
>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein| Length = 718 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -2 Query: 430 GGGRSKPAQLARRHLERGPAG-----RCRVRRVASS 338 GG PA+ RHL+RGP+G +C R A S Sbjct: 261 GGSPEAPAETFARHLDRGPSGTTGSMQCMALRAAVS 296
>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein| Length = 715 Score = 29.3 bits (64), Expect = 5.4 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -2 Query: 430 GGGRSKPAQLARRHLERGPAG-----RCRVRRVASS 338 GG PA+ RHL+RGP+G +C R A S Sbjct: 261 GGSPEAPAETFARHLDRGPSGTTGSMQCMALRAAVS 296
>SNX41_ASHGO (Q759T1) Sorting nexin-41| Length = 603 Score = 28.9 bits (63), Expect = 7.1 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 7/91 (7%) Frame = +1 Query: 97 YFIYQMKDQRELEHLKQKNKMY----NNTAFSQSYNKHMQHKSYLNPLYI*S--LLVPP- 255 YF+ + + ++ ++++ ++ NN +H + +LNP YI S LL PP Sbjct: 191 YFLNPLNAENDIRIIEKRRRLLSRFLNNCHDITDIREHTVFQKFLNPEYIWSEVLLTPPV 250 Query: 256 PYVTTNSYGAYIIPPREDFHLVIVLKTRKKR 348 + TN+ A + P + L ++L T +R Sbjct: 251 SILPTNNLLAPPLNPTKPSPLHLLLPTPPRR 281
>MURG_THETN (Q8R9G6) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 364 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 18/83 (21%) Frame = +1 Query: 130 LEHLKQKNKMYNNTAFSQSYNKHMQHK----------------SYLNPLYI*SLLVPPPY 261 LE +K++N + +++ Y+ MQ+ S + + + S+L+P PY Sbjct: 232 LEKVKKENVVLDDSVKIVPYSHEMQYVYAAADIMICRAGAITLSEITAVGVPSILIPSPY 291 Query: 262 VTTN--SYGAYIIPPREDFHLVI 324 V N Y A ++ + FH+++ Sbjct: 292 VANNHQEYNARLLERQGAFHVIL 314
>SCG1_PIG (Q9GLG4) Secretogranin-1 precursor (Secretogranin I) (SgI)| (Chromogranin B) (CgB) [Contains: Peptide SR-17; Peptide HQ-34; Peptide KR-11] Length = 668 Score = 28.5 bits (62), Expect = 9.2 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 465 PGAAAGDENQQGAEGEANRRSWLGG 391 PG + E ++G EG+ + R+W GG Sbjct: 393 PGHSEESEEERGDEGQRHHRAWAGG 417
>AMNLS_CANFA (Q6UKI2) Amnionless protein precursor| Length = 458 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -3 Query: 471 QEPGAAAGDENQQGAEGEANRRSWLGGILKEVQLVVVGFVASLL 340 +E GA GD + G G +R GG+ + L+++ A LL Sbjct: 342 RESGAPVGDGSAAGPLGSGSRAGLAGGVAAGLLLLLLALAAGLL 385
>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein| 4.9) (Ultrahigh sulfur keratin-associated protein 4.9) (Fragment) Length = 191 Score = 28.5 bits (62), Expect = 9.2 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 7/86 (8%) Frame = +3 Query: 171 CIQSIL*QAYAAQVLFEPTLYIISACSSSLCHNKQLRCLYHSATGRLSPSHCVEN----- 335 C+ S V +PT S C ++ CH RC S PS CV + Sbjct: 66 CVSSCCRPQCCQPVCCQPTCCRPSCCETTCCHP---RCCISSC---CRPSCCVSSCCKPQ 119 Query: 336 --QEEATRRTLQRPAGPLSRCRRASC 407 Q + RP+ +S C R SC Sbjct: 120 CCQSVCCQPNCCRPSCSISSCCRPSC 145
>GLUQ_XANOR (Q5GZ90) Glutamyl-Q tRNA(Asp) synthetase (EC 6.1.1.-) (Glu-Q-RSs)| Length = 299 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Frame = +2 Query: 395 PSQLRRFA-SPSAPCWFSSPAAAPGSW 472 PS L RFA SP+ P F S AA GSW Sbjct: 4 PSYLGRFAPSPTGPLHFGSLLAAFGSW 30
>GDF6_HUMAN (Q6KF10) Growth/differentiation factor 6 precursor (GDF-6)| (Growth/differentiation factor 16) Length = 455 Score = 28.5 bits (62), Expect = 9.2 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 250 PPPYVTTNSYGAYIIPPREDFHLVIVLKTRKKRRDEPYNDQLDLFQDAAEPAAP 411 PPP + + +G + PP+E LV+ ++++K +QL +AE A P Sbjct: 256 PPPDLRSLGFGRRVRPPQERALLVVFTRSQRKNLFAEMREQL----GSAEAAGP 305 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,953,498 Number of Sequences: 219361 Number of extensions: 1320983 Number of successful extensions: 4794 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4642 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4791 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
