Clone Name | rbart20a10 |
---|---|
Clone Library Name | barley_pub |
>gb|AY348312.1| Oryza sativa (indica cultivar-group) GPRP mRNA, complete cds Length = 640 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Minus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 623 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 570 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 569 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 510 Query: 360 tg 361 || Sbjct: 509 tg 508
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Plus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 940416 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 940469 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 940470 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 940529 Query: 360 tg 361 || Sbjct: 940530 tg 940531
>dbj|AK071554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104E19, full insert sequence Length = 926 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Minus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 708 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 655 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 654 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 595 Query: 360 tg 361 || Sbjct: 594 tg 593
>dbj|AK068289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147E18, full insert sequence Length = 2163 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Minus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 1940 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 1887 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 1886 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 1827 Query: 360 tg 361 || Sbjct: 1826 tg 1825
>dbj|AK060883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B01, full insert sequence Length = 1481 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Minus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 1267 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 1214 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 1213 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 1154 Query: 360 tg 361 || Sbjct: 1153 tg 1152
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 119 bits (60), Expect = 8e-24 Identities = 108/122 (88%), Gaps = 9/122 (7%) Strand = Plus / Plus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||||||| || || ||||||||||||| |||||| Sbjct: 30813 gcgcattacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgc 30866 Query: 303 ttgccgtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 30867 ttgccatgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtgg 30926 Query: 360 tg 361 || Sbjct: 30927 tg 30928
>ref|XM_493896.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 426 Score = 109 bits (55), Expect = 7e-21 Identities = 103/117 (88%), Gaps = 9/117 (7%) Strand = Plus / Minus Query: 248 ttacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgcc 307 |||||||||||||||||||||||| || || ||||||||||||| ||||||||||| Sbjct: 426 ttacttccacttcttgaacttgccaccacc---gaacatgccgtgc---ccatgcttgcc 373 Query: 308 gtgcttgaacttgccatgg---ccgtgcttcccgtgcttgaacttgccgccgtggtg 361 |||||||||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct: 372 atgcttgaacttgccatggtggccgtgcttgccatgcttgaacttgccgccgtggtg 316
>dbj|AK099495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027I01, full insert sequence Length = 928 Score = 103 bits (52), Expect = 4e-19 Identities = 106/122 (86%), Gaps = 9/122 (7%) Strand = Plus / Minus Query: 243 gcgcattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgc 302 ||||||||||||||||||||||||| ||| || || ||||||||||||| |||||| Sbjct: 709 gcgcattacttccacttcttgaactagccaccacc---gaacatgccgtgc---ccatgc 656 Query: 303 ttgccgtgcttgaacttgcca---tggccgtgcttcccgtgcttgaacttgccgccgtgg 359 ||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 655 ttgccatgcttgaacttgccatggtggccgtgcttgccacgcttgaacttgccgccgtgg 596 Query: 360 tg 361 || Sbjct: 595 tg 594
>emb|AJ242804.1|SST242804 Sporobolus stapfianus mRNA for putative glycine and proline-rich protein Length = 855 Score = 81.8 bits (41), Expect = 2e-12 Identities = 78/89 (87%), Gaps = 6/89 (6%) Strand = Plus / Minus Query: 246 cattacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 ||||||||||||||||||||||| |||||| |||||||||||||| || |||||| Sbjct: 681 cattacttccacttcttgaactt---gccgccaccgaacatgccgtg---gccgtgcttg 628 Query: 306 ccgtgcttgaacttgccatggccgtgctt 334 || |||||||||||||| ||||||||||| Sbjct: 627 ccatgcttgaacttgccgtggccgtgctt 599 Score = 50.1 bits (25), Expect = 0.006 Identities = 43/49 (87%) Strand = Plus / Minus Query: 305 gccgtgcttgaacttgccatggccgtgcttcccgtgcttgaacttgccg 353 ||||||||||||||| ||||||||| | |||||||||||||||||| Sbjct: 607 gccgtgcttgaacttcccatggccgccgtgaccgtgcttgaacttgccg 559 Score = 48.1 bits (24), Expect = 0.023 Identities = 36/40 (90%) Strand = Plus / Minus Query: 314 gaacttgccatggccgtgcttcccgtgcttgaacttgccg 353 |||| |||| ||||||||||| || ||||||||||||||| Sbjct: 649 gaacatgccgtggccgtgcttgccatgcttgaacttgccg 610
>gb|AY109327.1| Zea mays CL468_1 mRNA sequence Length = 2907 Score = 81.8 bits (41), Expect = 2e-12 Identities = 75/85 (88%), Gaps = 6/85 (7%) Strand = Plus / Plus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgccgt 309 |||||||||||||||||||||||||| |||||||||||||| ||| |||||||| | Sbjct: 193 acttccacttcttgaacttgccgccg---ccgaacatgccgtg---cccgtgcttgccat 246 Query: 310 gcttgaacttgccatggccgtgctt 334 ||||||||||||| || |||||||| Sbjct: 247 gcttgaacttgccgtgcccgtgctt 271 Score = 40.1 bits (20), Expect = 5.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 314 gaacttgccatggccgtgcttcccgtgcttgaacttgccg 353 |||| |||| || |||||||| || ||||||||||||||| Sbjct: 221 gaacatgccgtgcccgtgcttgccatgcttgaacttgccg 260
>emb|X72383.1|DCA3GRP D.carota A3 mRNA for glycine rich protein Length = 744 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 293 cttcccatgcttgccgtgcttgaacttgccatggccgtgcttcccgtgcttgaacttgcc 352 |||||| ||||| || ||||| ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 526 cttcccgtgctttccctgcttaaactttccatgaccgtgcttaccgtgcttgaacttgcc 467 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 300 tgcttgccgtgcttgaacttgccatggcc 328 ||||| ||||||||||||||||||||||| Sbjct: 489 tgcttaccgtgcttgaacttgccatggcc 461
>ref|NM_118040.3| Arabidopsis thaliana rhodopsin-like receptor AT4G19200 mRNA, complete cds Length = 974 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 643 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 584 Query: 307 cgtgctt 313 | ||||| Sbjct: 583 catgctt 577 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 593 ccgtgctttccatgctttccgtgcttgaatttgcc 559
>gb|AF083724.1| Arabidopsis thaliana clone sps336 unknown mRNA Length = 814 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 586 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 527 Query: 307 cgtgctt 313 | ||||| Sbjct: 526 catgctt 520 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 536 ccgtgctttccatgctttccgtgcttgaatttgcc 502
>emb|AL161550.2|ATCHRIV50 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 50 Length = 199382 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 84455 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 84396 Query: 307 cgtgctt 313 | ||||| Sbjct: 84395 catgctt 84389 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 84405 ccgtgctttccatgctttccgtgcttgaatttgcc 84371
>emb|AL021687.1|ATT18B16 Arabidopsis thaliana DNA chromosome 4, BAC clone T18B16 (ESSA project) Length = 96574 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 68016 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 67957 Query: 307 cgtgctt 313 | ||||| Sbjct: 67956 catgctt 67950 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 67966 ccgtgctttccatgctttccgtgcttgaatttgcc 67932
>emb|BX826905.1|CNS0A3BT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB74ZE10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 841 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 593 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 534 Query: 307 cgtgctt 313 | ||||| Sbjct: 533 catgctt 527 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 543 ccgtgctttccatgctttccgtgcttgaatttgcc 509
>emb|BX827783.1|CNS0A2A1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH21ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 915 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 584 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 525 Query: 307 cgtgctt 313 | ||||| Sbjct: 524 catgctt 518 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 534 ccgtgctttccatgctttccgtgcttgaatttgcc 500
>gb|AY088588.1| Arabidopsis thaliana clone 8188 mRNA, complete sequence Length = 918 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 643 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 584 Query: 307 cgtgctt 313 | ||||| Sbjct: 583 catgctt 577 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 593 ccgtgctttccatgctttccgtgcttgaatttgcc 559
>gb|BT002527.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 857 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 247 attacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgc 306 ||||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| | Sbjct: 606 attacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttc 547 Query: 307 cgtgctt 313 | ||||| Sbjct: 546 catgctt 540 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 556 ccgtgctttccatgctttccgtgcttgaatttgcc 522
>gb|BT006561.1| Arabidopsis thaliana At4g19200 gene, complete cds Length = 540 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Minus Query: 248 ttacttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttgcc 307 |||||||||||||||||| ||||| || || || |||||||| || ||||| ||||| || Sbjct: 540 ttacttccacttcttgaatttgcctcctcctccaaacatgccatgtttcccgtgctttcc 481 Query: 308 gtgctt 313 ||||| Sbjct: 480 atgctt 475 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 288 ccgtgcttcccatgcttgccgtgcttgaacttgcc 322 |||||||| |||||||| ||||||||||| ||||| Sbjct: 491 ccgtgctttccatgctttccgtgcttgaatttgcc 457
>gb|AY112420.1| Zea mays CL55919_1 mRNA sequence Length = 704 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Plus Query: 302 cttgccgtgcttgaacttgccatg 325 |||||||||||||||||||||||| Sbjct: 241 cttgccgtgcttgaacttgccatg 264
>gb|AY109775.1| Zea mays CL62017_1 mRNA sequence Length = 689 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcc 277 |||||||||| ||||||||||||||||| Sbjct: 481 acttccacttgttgaacttgccgccgcc 454
>ref|NM_123903.2| Arabidopsis thaliana rhodopsin-like receptor AT5G45350 mRNA, complete cds Length = 862 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 597 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 545
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ccgtgcttcccgtgcttgaact 348 |||||||||||||||||||||| Sbjct: 1392647 ccgtgcttcccgtgcttgaact 1392626
>gb|BC005782.1| Mus musculus cDNA clone MGC:12025 IMAGE:3603243, complete cds Length = 1103 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 247 attacttccacttcttgaactt 268 |||||||||||||||||||||| Sbjct: 742 attacttccacttcttgaactt 721
>emb|X84315.1|ATGPRP A.thaliana GPRP gene Length = 2103 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 1901 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 1849
>gb|AY060514.1| Arabidopsis thaliana AT5g45350/MFC19_1 mRNA, complete cds Length = 534 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 532 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 480
>gb|AY052250.1| Arabidopsis thaliana AT5g45350/MFC19_1 mRNA, complete cds Length = 855 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 590 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 538
>gb|AY086217.1| Arabidopsis thaliana clone 22538 mRNA, complete sequence Length = 787 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Minus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 597 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 545
>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19 Length = 85020 Score = 44.1 bits (22), Expect = 0.36 Identities = 48/56 (85%), Gaps = 3/56 (5%) Strand = Plus / Plus Query: 250 acttccacttcttgaacttgccgccgcccccgaacatgccgtgcttcccatgcttg 305 |||||||||||||||||||||| || || ||||| || ||||||||||||||| Sbjct: 1508 acttccacttcttgaacttgcctcctcca---aacattccatgcttcccatgcttg 1560
>ref|XM_594487.2| PREDICTED: Bos taurus similar to G-protein coupled receptor family C group 5 member B precursor (Retinoic acid induced gene 2 protein) (RAIG-2) (A-69G12.1) (LOC516334), partial mRNA Length = 2666 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 cttccacttcttgaacttgcc 271 ||||||||||||||||||||| Sbjct: 967 cttccacttcttgaacttgcc 947
>gb|BT025414.1| Bos taurus G protein-coupled receptor, family C, group 5, member B (GPRC5B), mRNA, complete cds Length = 1321 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 cttccacttcttgaacttgcc 271 ||||||||||||||||||||| Sbjct: 779 cttccacttcttgaacttgcc 759
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 atagtgccaaatttatatata 82 ||||||||||||||||||||| Sbjct: 46822 atagtgccaaatttatatata 46842
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence Length = 126659 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 atagtgccaaatttatatata 82 ||||||||||||||||||||| Sbjct: 82408 atagtgccaaatttatatata 82428
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 286 tgccgtgcttcccatgcttgccgtgcttg 314 |||||||||| || ||||||||||||||| Sbjct: 659616 tgccgtgcttgccgtgcttgccgtgcttg 659644 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 286 tgccgtgcttcccatgcttgccgtgcttg 314 |||||||||| || ||||||||||||||| Sbjct: 659607 tgccgtgcttgccgtgcttgccgtgcttg 659635 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 286 tgccgtgcttcccatgcttgccgtgctt 313 |||||||||| || |||||||||||||| Sbjct: 659625 tgccgtgcttgccgtgcttgccgtgctt 659652 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 287 gccgtgcttcccatgcttgccgtgcttg 314 ||||||||| || ||||||||||||||| Sbjct: 659599 gccgtgcttgccgtgcttgccgtgcttg 659626
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 atagtgccaaatttatatata 82 ||||||||||||||||||||| Sbjct: 32687387 atagtgccaaatttatatata 32687407
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 tgtccgcccatcatgcctccc 407 ||||||||||||||||||||| Sbjct: 429344 tgtccgcccatcatgcctccc 429324 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cttgccatggccgtgcttcc 336 |||||||||||||||||||| Sbjct: 741764 cttgccatggccgtgcttcc 741745
>ref|NM_208929.1| Eremothecium gossypii ACR174Cp (ACR174C), mRNA Length = 1146 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 286 tgccgtgcttcccatgcttgccgtgcttg 314 |||||||||| || ||||||||||||||| Sbjct: 219 tgccgtgcttgccgtgcttgccgtgcttg 191 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 286 tgccgtgcttcccatgcttgccgtgcttg 314 |||||||||| || ||||||||||||||| Sbjct: 210 tgccgtgcttgccgtgcttgccgtgcttg 182 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 gccgtgcttcccatgcttgccgtgcttg 314 ||||||||| || ||||||||||||||| Sbjct: 227 gccgtgcttgccgtgcttgccgtgcttg 200 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 286 tgccgtgcttcccatgcttgccgtgctt 313 |||||||||| || |||||||||||||| Sbjct: 201 tgccgtgcttgccgtgcttgccgtgctt 174
>emb|AL442112.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0423H10, complete sequence Length = 76529 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 atagtgccaaatttatatata 82 ||||||||||||||||||||| Sbjct: 19660 atagtgccaaatttatatata 19680
>gb|BC089149.1| Xenopus laevis cDNA clone MGC:85067 IMAGE:6327400, complete cds Length = 3064 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ttctggaagcctacacgaaga 195 ||||||||||||||||||||| Sbjct: 1622 ttctggaagcctacacgaaga 1642
>ref|NM_001030902.1| Gallus gallus stromal membrane-associated protein 1-like (SMAP1L), mRNA Length = 2301 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ccatcatgcctcccatcatg 413 |||||||||||||||||||| Sbjct: 970 ccatcatgcctcccatcatg 951
>gb|AC007928.7| Drosophila melanogaster clone BACR04O02, complete sequence Length = 176395 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaccaaaccaagttctggaa 182 |||||||||||||||||||| Sbjct: 102983 gaccaaaccaagttctggaa 102964
>gb|AC144488.2| Gasterosteus aculeatus clone CH213-119K16, complete sequence Length = 217665 Score = 40.1 bits (20), Expect = 5.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 37 tatcttgtcatcacaaacgcagactata 64 |||||||||| ||||||||||||||||| Sbjct: 215030 tatcttgtca-cacaaacgcagactata 215004
>ref|XM_386854.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06678.1) partial mRNA Length = 2097 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tgccgccgcccccgaacatg 287 |||||||||||||||||||| Sbjct: 1900 tgccgccgcccccgaacatg 1881
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 caccacaccctgctttaaat 142 |||||||||||||||||||| Sbjct: 208829 caccacaccctgctttaaat 208848
>gb|AC102792.7| Mus musculus chromosome 7, clone RP23-370I17, complete sequence Length = 215999 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 aaaggctttccctgaccaaa 169 |||||||||||||||||||| Sbjct: 83966 aaaggctttccctgaccaaa 83985
>emb|AL731560.4| Human DNA sequence from clone RP11-481O16 on chromosome 10 Contains part of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, complete sequence Length = 102416 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cttcccatgcttgccgtgct 312 |||||||||||||||||||| Sbjct: 17631 cttcccatgcttgccgtgct 17612
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 gccgtgcttcccatgcttgccgtgcttg 314 ||||||||| || ||||||||||||||| Sbjct: 2328589 gccgtgcttgccgtgcttgccgtgcttg 2328562
>ref|XM_787693.1| PREDICTED: Strongylocentrotus purpuratus similar to CG4076-PA (LOC587991), partial mRNA Length = 1075 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 cctccatgtccgcccatcatgcct 404 ||||||||||| |||||||||||| Sbjct: 212 cctccatgtccacccatcatgcct 189
>emb|AJ851487.1| Gallus gallus mRNA for hypothetical protein, clone 3n15 Length = 2301 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 ccatcatgcctcccatcatg 413 |||||||||||||||||||| Sbjct: 970 ccatcatgcctcccatcatg 951
>gb|AC139355.8| Medicago truncatula clone mth2-36o3, complete sequence Length = 108135 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tgccaaatttatatatagag 85 |||||||||||||||||||| Sbjct: 46049 tgccaaatttatatatagag 46068
>gb|AC022809.6| Homo sapiens chromosome 18, clone RP11-699A5, complete sequence Length = 201020 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 tgctttaaatacatctcaaa 152 |||||||||||||||||||| Sbjct: 135819 tgctttaaatacatctcaaa 135800
>emb|BX322600.13| Zebrafish DNA sequence from clone CH211-273N5, complete sequence Length = 22306 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 agtcatatcttgtcatcaca 51 |||||||||||||||||||| Sbjct: 14304 agtcatatcttgtcatcaca 14323
>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete sequence Length = 158695 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 caccacaccctgctttaaat 142 |||||||||||||||||||| Sbjct: 74702 caccacaccctgctttaaat 74721
>gb|AC138374.2| Homo sapiens chromosome 11, clone CTD-2647G13, complete sequence Length = 196424 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacacaatggtcagggactt 24 |||||||||||||||||||| Sbjct: 59593 cacacaatggtcagggactt 59574
>emb|BX649499.11| Zebrafish DNA sequence from clone DKEY-60A16 in linkage group 20, complete sequence Length = 201391 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gctttaaatacatctcaaag 153 |||||||||||||||||||| Sbjct: 37519 gctttaaatacatctcaaag 37500
>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the complete sequence Length = 220679 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 gaccaaaccaagttctggaa 182 |||||||||||||||||||| Sbjct: 202720 gaccaaaccaagttctggaa 202739
>dbj|AP006284.2| Homo sapiens genomic DNA, chromosome 11 clone:RP11-496I9, complete sequence Length = 104658 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cacacaatggtcagggactt 24 |||||||||||||||||||| Sbjct: 2379 cacacaatggtcagggactt 2360 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,328,054 Number of Sequences: 3902068 Number of extensions: 3328054 Number of successful extensions: 62597 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 62272 Number of HSP's gapped (non-prelim): 269 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)