Clone Name | rbart20a03 |
---|---|
Clone Library Name | barley_pub |
>gb|U01963.1|HVU01963 Hordeum vulgare CM 72 germin subunit mRNA, complete cds Length = 1006 Score = 246 bits (124), Expect = 5e-62 Identities = 127/128 (99%) Strand = Plus / Minus Query: 320 tgcaaaatgcaaactatattttttgacaaagatggcaataaaaggtagtacattcaattc 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 998 tgcaaaatgcaaactatattttttgacaaagatggcaataaaaggtagtacattcaattc 939 Query: 380 ctcgtattggttctgaagattaaaccatgaggctaacttattcaatttattacaactgca 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 ctcgtattggttctgaagattaaaccatgaggctaacttattcaatttattacaactgca 879 Query: 440 cgcgagat 447 ||||||| Sbjct: 878 tgcgagat 871 Score = 167 bits (84), Expect = 4e-38 Identities = 150/171 (87%), Gaps = 7/171 (4%) Strand = Plus / Minus Query: 16 tagtacattcaatttttcatattggttcttaaggctacaccatgcggctaacttattcaa 75 |||||||||||||| || |||||||||| ||| || |||||| ||||||||||||||| Sbjct: 953 tagtacattcaattcctcgtattggttctgaagattaaaccatgaggctaacttattcaa 894 Query: 76 tcttattacaactgcatgcgagattaacccaaagcttgaatacatgtcttc------gaa 129 | ||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 893 t-ttattacaactgcatgcgagattaaccggaagcttgaatacatgtcttctgctgagaa 835 Query: 130 ttactaaattttgctaccatgcatatacacaaatatgcattgattatttaa 180 | | ||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 834 tcattaaattttgctaccatgcatatacagaattatgcattgattatttaa 784
>gb|M21962.1|WHTGAMINA Triticum aestivum germin protein precursor, mRNA, complete cds Length = 1012 Score = 115 bits (58), Expect = 1e-22 Identities = 130/153 (84%), Gaps = 12/153 (7%) Strand = Plus / Minus Query: 16 tagtacattcaatttttcatattggttct----taaggctacaccatgcggctaacttat 71 |||||||||||||| ||||||||||||| |||||||||||||| ||||||||| | Sbjct: 954 tagtacattcaattcctcatattggttctgatcgaaggctacaccatgaggctaacttgt 895 Query: 72 tcaatcttattaca--actgcatgcgagattaacccaaagcttgaatacatgtcttc--- 126 |||||||||||||| ||| ||||||||||||||| || ||||||||||||||||| Sbjct: 894 tcaatcttattacacgactacatgcgagattaacctgaaacttgaatacatgtcttctgg 835 Query: 127 ---gaattactaaattttgctaccatgcatata 156 |||||| |||||||||||| |||||||||| Sbjct: 834 tgagaattattaaattttgctagcatgcatata 802 Score = 73.8 bits (37), Expect = 4e-10 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand = Plus / Minus Query: 345 acaaagatggcaataaaaggtagtacattcaattcctcgtattggttct----gaagatt 400 ||||||| | |||||||| ||||||||||||||||||| |||||||||| |||| | Sbjct: 974 acaaagacgacaataaaaagtagtacattcaattcctcatattggttctgatcgaaggct 915 Query: 401 aaaccatgaggctaacttattcaat-ttattaca 433 | |||||||||||||||| |||||| |||||||| Sbjct: 914 acaccatgaggctaacttgttcaatcttattaca 881
>gb|M63223.1|WHTGERMIN Wheat germin 9f-2.8 gene, complete cds Length = 2822 Score = 115 bits (58), Expect = 1e-22 Identities = 130/153 (84%), Gaps = 12/153 (7%) Strand = Plus / Minus Query: 16 tagtacattcaatttttcatattggttct----taaggctacaccatgcggctaacttat 71 |||||||||||||| ||||||||||||| |||||||||||||| ||||||||| | Sbjct: 2667 tagtacattcaattcctcatattggttctgatcgaaggctacaccatgaggctaacttgt 2608 Query: 72 tcaatcttattaca--actgcatgcgagattaacccaaagcttgaatacatgtcttc--- 126 |||||||||||||| ||| ||||||||||||||| || ||||||||||||||||| Sbjct: 2607 tcaatcttattacacgactacatgcgagattaacctgaaacttgaatacatgtcttctgg 2548 Query: 127 ---gaattactaaattttgctaccatgcatata 156 |||||| |||||||||||| |||||||||| Sbjct: 2547 tgagaattattaaattttgctagcatgcatata 2515 Score = 73.8 bits (37), Expect = 4e-10 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand = Plus / Minus Query: 345 acaaagatggcaataaaaggtagtacattcaattcctcgtattggttct----gaagatt 400 ||||||| | |||||||| ||||||||||||||||||| |||||||||| |||| | Sbjct: 2687 acaaagacgacaataaaaagtagtacattcaattcctcatattggttctgatcgaaggct 2628 Query: 401 aaaccatgaggctaacttattcaat-ttattaca 433 | |||||||||||||||| |||||| |||||||| Sbjct: 2627 acaccatgaggctaacttgttcaatcttattaca 2594 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 269 acgtaaactttggaacatgtttgacttacaaatggtaattggacaaatata 319 ||||||||| | |||||||||||||||| ||| |||||| ||||||||||| Sbjct: 2775 acgtaaactatagaacatgtttgacttataaaaggtaatcggacaaatata 2725
>emb|Y09916.1|TAPSBGER2 T.aestivum mRNA for germin-like protein 2, partial Length = 764 Score = 113 bits (57), Expect = 5e-22 Identities = 84/93 (90%) Strand = Plus / Minus Query: 33 catattggttcttaaggctacaccatgcggctaacttattcaatcttattacaactgcat 92 |||||||| ||| |||||| |||||| |||||||||||||||||||||||||| ||||| Sbjct: 664 catattggatctgaaggcttaaccatggggctaacttattcaatcttattacaattgcat 605 Query: 93 gcgagattaacccaaagcttgaatacatgtctt 125 ||||||||||||| ||||||| |||||||||| Sbjct: 604 gcgagattaacccggagcttgagtacatgtctt 572 Score = 79.8 bits (40), Expect = 7e-12 Identities = 89/104 (85%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 345 acaaagatggcaataaaaggtagtacattcaattcctcgtattggttctgaagattaaac 404 ||||||| | |||||||| | ||||||| ||||||| | |||||| ||||||| | ||| Sbjct: 701 acaaagacgacaataaaaagaagtacatacaattccccatattggatctgaaggcttaac 642 Query: 405 catgaggctaacttattcaat-ttattacaactgcacgcgagat 447 |||| |||||||||||||||| ||||||||| |||| ||||||| Sbjct: 641 catggggctaacttattcaatcttattacaattgcatgcgagat 598
>emb|Y09918.1|TAPSBGER4 T.aestivum mRNA for germin-like protein 4, partial Length = 572 Score = 87.7 bits (44), Expect = 3e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 35 tattggttcttaaggctacaccatgcggctaacttattcaatcttattacaactgcatgc 94 |||||| ||| ||||||| ||| | |||||||||||||||||||||||||||||||||| Sbjct: 491 tattggctctgaaggctaaaccgcgaggctaacttattcaatcttattacaactgcatgc 432 Query: 95 gagattaacccaaagcttgaatacatgtcttc 126 ||| ||| | |||||||||||| ||||||| Sbjct: 431 gagcttagctagaagcttgaatacgtgtcttc 400 Score = 75.8 bits (38), Expect = 1e-10 Identities = 63/70 (90%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 377 ttcctcgtattggttctgaagattaaaccatgaggctaacttattcaat-ttattacaac 435 ||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||| Sbjct: 498 ttcctcgtattggctctgaaggctaaaccgcgaggctaacttattcaatcttattacaac 439 Query: 436 tgcacgcgag 445 |||| ||||| Sbjct: 438 tgcatgcgag 429
>gb|M63224.1|WHTGERMINA Wheat germin 9f-3.8 gene, complete cds Length = 3761 Score = 85.7 bits (43), Expect = 1e-13 Identities = 59/63 (93%), Gaps = 1/63 (1%) Strand = Plus / Minus Query: 64 taacttattcaatcttattacaactgcatgcgagattaacccaaagcttgaatacatgtc 123 |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| Sbjct: 2131 taacttattcaatcttattacaactgcatg-gagcttaaccagaagcttgaatacatgtc 2073 Query: 124 ttc 126 ||| Sbjct: 2072 ttc 2070 Score = 52.0 bits (26), Expect = 0.002 Identities = 73/86 (84%), Gaps = 2/86 (2%) Strand = Plus / Minus Query: 356 aataaaaggtagtacatt-caattcctcgtattggttctgaagattaaaccatgaggcta 414 ||||||| | |||||||| |||||| |||||||||||| |||| | ||| |||| || Sbjct: 2189 aataaaaagcagtacatttcaattcatcgtattggttccgaaggctgaactgcgaggtta 2130 Query: 415 acttattcaat-ttattacaactgca 439 ||||||||||| |||||||||||||| Sbjct: 2129 acttattcaatcttattacaactgca 2104
>emb|Y09917.1|TAPSBGER3 T.aestivum mRNA for germin-like protein 3 Length = 1027 Score = 50.1 bits (25), Expect = 0.006 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 82 tacaactgcatgcgagattaacccaaagcttgaatacatgtcttc 126 |||||||||||| ||| |||||| |||||||||||||||||||| Sbjct: 855 tacaactgcatg-gagcttaaccagaagcttgaatacatgtcttc 812
>gb|AC158966.5| Mus musculus chromosome 1, clone RP23-382I8, complete sequence Length = 183519 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 catgcatatacacaaatatgca 168 |||||||||||||||||||||| Sbjct: 46279 catgcatatacacaaatatgca 46258
>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence Length = 134892 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 168 attgattatttaatattactaaacatatta 197 |||||||||||||| |||||||| |||||| Sbjct: 8099 attgattatttaatcttactaaatatatta 8070
>emb|BX323560.16| Zebrafish DNA sequence from clone DKEY-265E15 in linkage group 4, complete sequence Length = 190574 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acaaatatatgcaaaatgcaaa 332 |||||||||||||||||||||| Sbjct: 52188 acaaatatatgcaaaatgcaaa 52209
>emb|BX950183.9| Zebrafish DNA sequence from clone DKEY-28C2 in linkage group 20, complete sequence Length = 200179 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 26 aatttttcatattggttcttaa 47 |||||||||||||||||||||| Sbjct: 86037 aatttttcatattggttcttaa 86058
>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20, complete sequence Length = 217957 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 attgattatttaatattactaa 189 |||||||||||||||||||||| Sbjct: 32375 attgattatttaatattactaa 32396
>emb|AL844215.9| Mouse DNA sequence from clone RP23-34D22 on chromosome 4, complete sequence Length = 82193 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 160 aaatatgcattgattatttaatatta 185 ||||||||| |||||||||||||||| Sbjct: 14931 aaatatgcaatgattatttaatatta 14956
>gb|AC112926.7| Mus musculus chromosome 3, clone RP23-215M7, complete sequence Length = 222106 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 attttttgacaaagatggcaa 357 ||||||||||||||||||||| Sbjct: 151453 attttttgacaaagatggcaa 151473
>emb|Y14203.1|HVY14203 Hordeum vulgare mRNA for oxalate oxidase (HvOxOa) Length = 970 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 taacttattcaatcttattac 84 ||||||||||||||||||||| Sbjct: 909 taacttattcaatcttattac 889
>emb|BX510656.7| Zebrafish DNA sequence from clone CH211-132N7 in linkage group 7, complete sequence Length = 174960 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 acatattaaccaaaattcaat 210 ||||||||||||||||||||| Sbjct: 172577 acatattaaccaaaattcaat 172557 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 acatattaaccaaaattcaat 210 ||||||||||||||||||||| Sbjct: 172006 acatattaaccaaaattcaat 171986
>emb|CR774194.4| Zebrafish DNA sequence from clone DKEYP-11A2 in linkage group 1, complete sequence Length = 160120 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 aatttttcatattggttctta 46 ||||||||||||||||||||| Sbjct: 2215 aatttttcatattggttctta 2195
>gb|AC147010.31| Medicago truncatula clone mth2-145p5, complete sequence Length = 132320 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 actttggaacatgtttgactt 295 ||||||||||||||||||||| Sbjct: 129606 actttggaacatgtttgactt 129626
>gb|AC068984.15| Homo sapiens 3 BAC RP11-549K5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 49251 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 aaatatatgcaaaatgcaaac 333 ||||||||||||||||||||| Sbjct: 27711 aaatatatgcaaaatgcaaac 27691
>gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-145m24, complete sequence Length = 89051 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 actttggaacatgtttgactt 295 ||||||||||||||||||||| Sbjct: 33951 actttggaacatgtttgactt 33931
>gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-63e12, complete sequence Length = 251117 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 taatattttacattgtcatta 240 ||||||||||||||||||||| Sbjct: 176775 taatattttacattgtcatta 176755
>gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone BACR06I01, complete sequence Length = 175167 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ttgtcattagccaaaattcaa 252 ||||||||||||||||||||| Sbjct: 41052 ttgtcattagccaaaattcaa 41072
>gb|AC096770.3| Homo sapiens BAC clone RP11-755P13 from 2, complete sequence Length = 197605 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 atacacaaatatgcattgatt 174 ||||||||||||||||||||| Sbjct: 4709 atacacaaatatgcattgatt 4689
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete sequence Length = 265413 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 232 ttgtcattagccaaaattcaa 252 ||||||||||||||||||||| Sbjct: 86105 ttgtcattagccaaaattcaa 86125
>gb|AC122262.3| Mus musculus BAC clone RP23-190N21 from chromosome 9, complete sequence Length = 193762 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 atattaaccaaaattcaatg 211 |||||||||||||||||||| Sbjct: 132781 atattaaccaaaattcaatg 132800
>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and partial cds Length = 270752 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attggacaaatatatgcaaa 325 |||||||||||||||||||| Sbjct: 179870 attggacaaatatatgcaaa 179851
>gb|AC138359.8| Mus musculus chromosome 1, clone RP24-383H12, complete sequence Length = 217891 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttggaacatgtttgacttac 297 |||||||||||||||||||| Sbjct: 12786 ttggaacatgtttgacttac 12805
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tggcaataaaaggtagtaca 371 |||||||||||||||||||| Sbjct: 4454984 tggcaataaaaggtagtaca 4455003
>emb|CR932600.1|CNS0KYBV Paramecium tetraurelia, Small GTPase rab, putative, complete gene Length = 3001 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 taacttattcaatttattac 432 |||||||||||||||||||| Sbjct: 2656 taacttattcaatttattac 2637
>emb|CR385030.4| Zebrafish DNA sequence from clone DKEY-114E9, complete sequence Length = 75894 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 aatattttacattgtcatta 240 |||||||||||||||||||| Sbjct: 33676 aatattttacattgtcatta 33657
>gb|AC127226.3| Mus musculus BAC clone RP24-500I10 from chromosome 6, complete sequence Length = 166743 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 aattcaatgaagattcataa 222 |||||||||||||||||||| Sbjct: 136844 aattcaatgaagattcataa 136863
>gb|AC122814.3| Mus musculus BAC clone RP23-234A12 from 6, complete sequence Length = 144136 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 318 tatgcaaaatgcaaactatattttttga 345 |||| |||||||| |||||||||||||| Sbjct: 111941 tatgaaaaatgcatactatattttttga 111914
>emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in linkage group 23, complete sequence Length = 236277 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 taccatgcatatacacaaat 163 |||||||||||||||||||| Sbjct: 160393 taccatgcatatacacaaat 160374
>gb|AC004456.1| Homo sapiens PAC clone RP5-1100F23 from 7, complete sequence Length = 143436 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 337 attttttgacaaagatggcaataa 360 ||||||||||||||||| |||||| Sbjct: 56671 attttttgacaaagatgccaataa 56694
>gb|AC107801.14| Mus musculus, clone RP23-29M6, complete sequence Length = 283075 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aatattactaaacatattaa 198 |||||||||||||||||||| Sbjct: 89395 aatattactaaacatattaa 89376
>emb|AL135790.7| Human DNA sequence from clone RP11-87N24 on chromosome 9p22.1-23 Contains a ribosomal protein S12 (RPS12) pseudogene, 2 novel genes, the 5' end of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD). and a CpG island, complete sequence Length = 176273 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tctgaagattaaaccatgag 410 |||||||||||||||||||| Sbjct: 125588 tctgaagattaaaccatgag 125607
>emb|AL133393.16| Human DNA sequence from clone RP1-21P18 on chromosome 6, complete sequence Length = 24112 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 caaatggtaattggacaaat 316 |||||||||||||||||||| Sbjct: 12390 caaatggtaattggacaaat 12409
>emb|X87369.1|CPNANH C.perfringens nanH gene & ORF1,2,3 & 4 Length = 6482 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgacaaagatggcaataaaa 362 |||||||||||||||||||| Sbjct: 2430 tgacaaagatggcaataaaa 2449
>gb|AC158168.2| Mus musculus BAC clone RP23-325B1 from chromosome 6, complete sequence Length = 184841 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 aattcaatgaagattcataa 222 |||||||||||||||||||| Sbjct: 165125 aattcaatgaagattcataa 165106
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 taatattttacattgtcatt 239 |||||||||||||||||||| Sbjct: 2722 taatattttacattgtcatt 2741
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 taatattttacattgtcatt 239 |||||||||||||||||||| Sbjct: 195377 taatattttacattgtcatt 195396
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 taatattttacattgtcatt 239 |||||||||||||||||||| Sbjct: 27753 taatattttacattgtcatt 27772
>gb|AC103749.2| Homo sapiens chromosome 15, clone RP11-4F5, complete sequence Length = 190678 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgcaaactatattttt 342 |||||||||||||||||||| Sbjct: 102709 aaaatgcaaactatattttt 102690
>gb|AF012825.2| Ectromelia virus strain Moscow, complete genome Length = 209771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 tggacaaatatatgcaaaat 327 |||||||||||||||||||| Sbjct: 62664 tggacaaatatatgcaaaat 62683
>gb|AC110788.3| Homo sapiens BAC clone RP11-473D24 from 4, complete sequence Length = 80766 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 ttattcaatttattacaact 436 |||||||||||||||||||| Sbjct: 36778 ttattcaatttattacaact 36759
>gb|AC084768.4| Homo sapiens chromosome 8, clone RP11-281H11, complete sequence Length = 173677 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 208 aatgaagattcataatattttaca 231 |||||||| ||||||||||||||| Sbjct: 158554 aatgaagaatcataatattttaca 158531
>gb|AC006248.4| Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence Length = 119753 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 atatacacaaatatgcattgatta 175 ||||||||| |||||||||||||| Sbjct: 92894 atatacacacatatgcattgatta 92917
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 103196 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tttaatattactaaacatat 195 |||||||||||||||||||| Sbjct: 81906 tttaatattactaaacatat 81887
>gb|AC087369.5| Homo sapiens chromosome 8, clone RP11-728L1, complete sequence Length = 193872 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 aatgaagattcataatattttaca 231 |||||||| ||||||||||||||| Sbjct: 165782 aatgaagaatcataatattttaca 165805
>gb|AC175489.2| Mus musculus chromosome 7, clone wi1-1435A20, complete sequence Length = 36798 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 catgcatatacacaaatatg 166 |||||||||||||||||||| Sbjct: 6805 catgcatatacacaaatatg 6824
>gb|AC011758.6|AC011758 Drosophila melanogaster, chromosome X, region 19C-19E, BAC clone BACR25I22, complete sequence Length = 164942 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 aaccaaaattcaatgaagattcat 220 |||||||| ||||||||||||||| Sbjct: 97579 aaccaaaagtcaatgaagattcat 97602
>gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145877 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 catatacacaaatatgcatt 170 |||||||||||||||||||| Sbjct: 140782 catatacacaaatatgcatt 140763
>emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in linkage group 23, complete sequence Length = 182686 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 aaatgcaaactatatttttt 343 |||||||||||||||||||| Sbjct: 152647 aaatgcaaactatatttttt 152666
>gb|AC117832.6| Homo sapiens chromosome 15, clone RP11-963M5, complete sequence Length = 171462 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 aaaatgcaaactatattttt 342 |||||||||||||||||||| Sbjct: 11383 aaaatgcaaactatattttt 11402
>gb|AC110073.3| Homo sapiens BAC clone RP11-62A4 from 4, complete sequence Length = 130088 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 tttttgacaaagatggcaataaaa 362 ||||||||||||||| |||||||| Sbjct: 107179 tttttgacaaagatgccaataaaa 107156
>gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complete sequence Length = 208477 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attggacaaatatatgcaaa 325 |||||||||||||||||||| Sbjct: 195124 attggacaaatatatgcaaa 195105
>gb|AC137643.3| Homo sapiens chromosome 16 clone RP11-95H3, complete sequence Length = 159836 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 tatatgcaaaatgcaaacta 335 |||||||||||||||||||| Sbjct: 39164 tatatgcaaaatgcaaacta 39183
>gb|AC004860.1|AC004860 Homo sapiens PAC clone RP4-691L7 from 7, complete sequence Length = 136225 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 aatgaagattcataatattttaca 231 |||||||| ||||||||||||||| Sbjct: 23393 aatgaagaatcataatattttaca 23416
>gb|AC125376.3| Homo sapiens BAC clone RP11-637G12 from 4, complete sequence Length = 75852 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 catgcatatacacaaatatg 166 |||||||||||||||||||| Sbjct: 44827 catgcatatacacaaatatg 44808
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 attggacaaatatatgcaaa 325 |||||||||||||||||||| Sbjct: 195587 attggacaaatatatgcaaa 195606
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 tgacaaagatggcaataaaa 362 |||||||||||||||||||| Sbjct: 902163 tgacaaagatggcaataaaa 902182
>emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, complete sequence Length = 188344 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 taccatgcatatacacaaat 163 |||||||||||||||||||| Sbjct: 121706 taccatgcatatacacaaat 121687
>emb|BX469936.11| Zebrafish DNA sequence from clone DKEY-32I12 in linkage group 19, complete sequence Length = 141772 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaaatgcaaactatattttt 342 |||||||||||||||||||| Sbjct: 127119 aaaatgcaaactatattttt 127100
>emb|AL732424.10| Zebrafish DNA sequence from clone BUSM1-221H11 in linkage group 9, complete sequence Length = 54305 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 aatattttacattgtcatta 240 |||||||||||||||||||| Sbjct: 20437 aatattttacattgtcatta 20418
>gb|AE003571.4| Drosophila melanogaster chromosome X, section 68 of 74 of the complete sequence Length = 302538 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 aaccaaaattcaatgaagattcat 220 |||||||| ||||||||||||||| Sbjct: 199771 aaccaaaagtcaatgaagattcat 199794
>emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-986E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214527 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 taatattttacattgtcatt 239 |||||||||||||||||||| Sbjct: 114638 taatattttacattgtcatt 114657
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete sequence Length = 288721 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 tttaatattactaaacatat 195 |||||||||||||||||||| Sbjct: 42826 tttaatattactaaacatat 42845
>gb|AC123676.9| Mus musculus chromosome 1, clone RP23-275F9, complete sequence Length = 169201 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttggaacatgtttgacttac 297 |||||||||||||||||||| Sbjct: 152208 ttggaacatgtttgacttac 152227
>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence Length = 181287 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 catgcatatacacaaatatg 166 |||||||||||||||||||| Sbjct: 5453 catgcatatacacaaatatg 5434
>gb|DQ066531.1| Raccoonpox virus isolate rcn-85a DNA polymerase gene, complete cds Length = 3018 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggacaaatatatgcaaaat 327 |||||||||||||||||||| Sbjct: 2805 tggacaaatatatgcaaaat 2786
>gb|AC171501.2| Mus musculus BAC clone RP23-255N3 from chromosome 6, complete sequence Length = 170938 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 318 tatgcaaaatgcaaactatattttttga 345 |||| |||||||| |||||||||||||| Sbjct: 123679 tatgaaaaatgcatactatattttttga 123706
>emb|Z66500.1|CET05C12 Caenorhabditis elegans Cosmid T05C12, complete sequence Length = 33780 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atttttcatattggttctta 46 |||||||||||||||||||| Sbjct: 30434 atttttcatattggttctta 30453
>emb|AL928841.6| Mouse DNA sequence from clone RP23-95M4 on chromosome 2, complete sequence Length = 48876 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aatattactaaacatattaa 198 |||||||||||||||||||| Sbjct: 39966 aatattactaaacatattaa 39985
>emb|AL672008.8| Mouse DNA sequence from clone RP23-389M3 on chromosome X, complete sequence Length = 160571 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aaatatatgcaaaatgcaaa 332 |||||||||||||||||||| Sbjct: 3176 aaatatatgcaaaatgcaaa 3195 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,854,155 Number of Sequences: 3902068 Number of extensions: 5854155 Number of successful extensions: 141615 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141294 Number of HSP's gapped (non-prelim): 314 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)