ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 37 0.038
2GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 36 0.049
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 33 0.42
4APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 29 6.0
5GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC ... 29 7.8

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 36.6 bits (83), Expect = 0.038
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 485 CDDPDAHVSWDGIHLTEAPYRFI 417
           CD+PD  V WDG+H T+A  +FI
Sbjct: 335 CDEPDKAVVWDGVHFTQAANKFI 357



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 36.2 bits (82), Expect = 0.049
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 479 DPDAHVSWDGIHLTEAPYRFIANTWLK 399
           D +  +SWDG+HL+E  Y  IAN W K
Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIWYK 135



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 485 CDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAHPPL 375
           C  P   V+WDG H TEA   +  +    G ++ PP+
Sbjct: 337 CACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 488 VCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAH 384
           +C +  +++ WDG+H T+  Y+ I    +K  Y H
Sbjct: 497 ICPNTSSYLFWDGVHPTQRAYKTINKVLIK-EYLH 530



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>GLGC_CLOCE (Q9L385) Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)|
           (ADP-glucose synthase) (ADP-glucose pyrophosphorylase)
           (ADPGlc PPase)
          Length = 426

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +3

Query: 297 SLVMDHHVMCVNN--NESI---DHVVADDA--GEGWMRVGALEPGVGDEAVGRLGEVDAI 455
           S++M +  +C N   N SI     ++ + A  GEG       +PG+ D  +  +GE  +I
Sbjct: 328 SIIMSNSRVCKNAYINRSIISEQAIIGEKARLGEGPDVPNEYKPGIYDSGITVVGEKSSI 387

Query: 456 PADVRVG 476
           PAD  +G
Sbjct: 388 PADPVIG 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,516,985
Number of Sequences: 219361
Number of extensions: 1103164
Number of successful extensions: 2506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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