ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart20a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476138.1| Oryza sativa (japonica cultivar-group), predic... 204 2e-49
2gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome... 204 2e-49
3gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome... 204 2e-49
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 204 2e-49
5dbj|AK122049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
6gb|AY107565.1| Zea mays PCO081097 mRNA sequence 84 5e-13
7ref|XM_476136.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
8gb|AY580163.1| Oryza sativa (japonica cultivar-group) putative l... 68 3e-08
9dbj|AK100289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
10dbj|AK059511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
11ref|NM_188437.1| Oryza sativa (japonica cultivar-group), predic... 60 7e-06
12gb|BT019092.1| Zea mays clone Contig690.F mRNA sequence 60 7e-06
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
14dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
15dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
16dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
17dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
18dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
19gb|BT009331.1| Triticum aestivum clone wlm24.pk0027.a6:fis, full... 58 3e-05
20gb|AY103823.1| Zea mays PCO141891 mRNA sequence 58 3e-05
21ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa815... 52 0.002
22ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa815... 52 0.002
23dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
25dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
26dbj|AK066113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
27ref|NM_188436.1| Oryza sativa (japonica cultivar-group), predic... 48 0.027
28dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
29dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
30gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
31gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full ... 46 0.11
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
33dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
35ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa814... 44 0.43
36ref|XM_476139.1| Oryza sativa (japonica cultivar-group), predic... 44 0.43
37gb|AY581127.1| Azorhizobium caulinodans strain ORS571 hydrogenas... 44 0.43
38gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y... 44 0.43
39dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
40dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
41gb|CP000081.1| Leishmania major chromosome 35, complete sequence 42 1.7
42ref|XM_838242.1| Leishmania major strain Friedlin hypothetical p... 42 1.7
43gb|AY108995.1| Zea mays PCO109727 mRNA sequence 42 1.7
44gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, co... 40 6.6
45emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 6.6
46emb|AM085514.1| Triticum aestivum mRNA for autophagy protein 9 (... 40 6.6
47gb|AC093323.3| Homo sapiens BAC clone RP11-539L10 from 4, comple... 40 6.6
48ref|XM_695238.1| PREDICTED: Danio rerio similar to P2Y purinocep... 40 6.6
49gb|AY104167.1| Zea mays PCO062696 mRNA sequence 40 6.6 
>ref|XM_476138.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1113

 Score =  204 bits (103), Expect = 2e-49
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                        
Query: 344  aatagaccatgtcgtcgcggacgacgctggcgaggggtggatgcgcgtaggggcccttga 403
            |||||||||||||||||||||| |||||||||||||| || || |||||||||||| |||
Sbjct: 1111 aatagaccatgtcgtcgcggacaacgctggcgaggggagggtgggcgtaggggcccctga 1052

                                                                        
Query: 404  gccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagctga 463
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1051 tccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccgtcccagctga 992

                                   
Query: 464  cgtgcgcgtcggggtcgtcgcac 486
            |||| |||||||| || ||||||
Sbjct: 991  cgtgagcgtcgggatcctcgcac 969
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>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
             complete sequence
          Length = 94286

 Score =  204 bits (103), Expect = 2e-49
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                         
Query: 344   aatagaccatgtcgtcgcggacgacgctggcgaggggtggatgcgcgtaggggcccttga 403
             |||||||||||||||||||||| |||||||||||||| || || |||||||||||| |||
Sbjct: 46277 aatagaccatgtcgtcgcggacaacgctggcgaggggagggtgggcgtaggggcccctga 46218

                                                                         
Query: 404   gccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagctga 463
              |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 46217 tccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccgtcccagctga 46158

                                    
Query: 464   cgtgcgcgtcggggtcgtcgcac 486
             |||| |||||||| || ||||||
Sbjct: 46157 cgtgagcgtcgggatcctcgcac 46135



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 390   gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
             |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 10465 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 10406

                       
Query: 450   gccatcccag 459
             ||| ||||||
Sbjct: 10405 gccgtcccag 10396



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 433   gcctcggtgaggtggatgccatcccagctgacgt 466
             ||||||||||| |||||||| |||||| ||||||
Sbjct: 61848 gcctcggtgagatggatgccgtcccagttgacgt 61815
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>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07,
              complete sequence
          Length = 123167

 Score =  204 bits (103), Expect = 2e-49
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                          
Query: 344    aatagaccatgtcgtcgcggacgacgctggcgaggggtggatgcgcgtaggggcccttga 403
              |||||||||||||||||||||| |||||||||||||| || || |||||||||||| |||
Sbjct: 113178 aatagaccatgtcgtcgcggacaacgctggcgaggggagggtgggcgtaggggcccctga 113119

                                                                          
Query: 404    gccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagctga 463
               |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 113118 tccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccgtcccagctga 113059

                                     
Query: 464    cgtgcgcgtcggggtcgtcgcac 486
              |||| |||||||| || ||||||
Sbjct: 113058 cgtgagcgtcgggatcctcgcac 113036



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 390   gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
             |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 77366 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 77307

                       
Query: 450   gccatcccag 459
             ||| ||||||
Sbjct: 77306 gccgtcccag 77297
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  204 bits (103), Expect = 2e-49
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                           
Query: 344     aatagaccatgtcgtcgcggacgacgctggcgaggggtggatgcgcgtaggggcccttga 403
               |||||||||||||||||||||| |||||||||||||| || || |||||||||||| |||
Sbjct: 6742016 aatagaccatgtcgtcgcggacaacgctggcgaggggagggtgggcgtaggggcccctga 6741957

                                                                           
Query: 404     gccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagctga 463
                |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6741956 tccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccgtcccagctga 6741897

                                      
Query: 464     cgtgcgcgtcggggtcgtcgcac 486
               |||| |||||||| || ||||||
Sbjct: 6741896 cgtgagcgtcgggatcctcgcac 6741874



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                           
Query: 390     gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
               |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 6706204 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 6706145

                         
Query: 450     gccatcccag 459
               ||| ||||||
Sbjct: 6706144 gccgtcccag 6706135



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 433     gcctcggtgaggtggatgccatcccagctgacgt 466
               ||||||||||| |||||||| |||||| ||||||
Sbjct: 6757587 gcctcggtgagatggatgccgtcccagttgacgt 6757554
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>dbj|AK122049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D08, full
            insert sequence
          Length = 1551

 Score =  204 bits (103), Expect = 2e-49
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                        
Query: 344  aatagaccatgtcgtcgcggacgacgctggcgaggggtggatgcgcgtaggggcccttga 403
            |||||||||||||||||||||| |||||||||||||| || || |||||||||||| |||
Sbjct: 1201 aatagaccatgtcgtcgcggacaacgctggcgaggggagggtgggcgtaggggcccctga 1142

                                                                        
Query: 404  gccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagctga 463
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1141 tccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggatgccgtcccagctga 1082

                                   
Query: 464  cgtgcgcgtcggggtcgtcgcac 486
            |||| |||||||| || ||||||
Sbjct: 1081 cgtgagcgtcgggatcctcgcac 1059
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>gb|AY107565.1| Zea mays PCO081097 mRNA sequence
          Length = 916

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                       
Query: 390 gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
           |||||||||||||||||||  || ||| ||| ||||||||| ||||||||||||||||||
Sbjct: 585 gtaggggcccttgagccagccgtcggcaatggagcggtaggccgcctcggtgaggtggat 526

                     
Query: 450 gccatcccag 459
           ||| ||||||
Sbjct: 525 gccgtcccag 516
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>ref|XM_476136.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 390  gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
            |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 1062 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1003

                      
Query: 450  gccatcccag 459
            ||| ||||||
Sbjct: 1002 gccgtcccag 993
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>gb|AY580163.1| Oryza sativa (japonica cultivar-group) putative lipase mRNA, complete
            cds
          Length = 1413

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 390  gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
            |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 1124 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1065

                      
Query: 450  gccatcccag 459
            ||| ||||||
Sbjct: 1064 gccgtcccag 1055
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>dbj|AK100289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075I03, full
            insert sequence
          Length = 1410

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 390  gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
            |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 1128 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1069

                      
Query: 450  gccatcccag 459
            ||| ||||||
Sbjct: 1068 gccgtcccag 1059
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>dbj|AK059511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B05, full
            insert sequence
          Length = 1422

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                        
Query: 390  gtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtggat 449
            |||||||||||||||||||   | ||||||| |||||||||  |||||||| ||||||||
Sbjct: 1139 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1080

                      
Query: 450  gccatcccag 459
            ||| ||||||
Sbjct: 1079 gccgtcccag 1070
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>ref|NM_188437.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 412  ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
            |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 1061 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 1012
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>gb|BT019092.1| Zea mays clone Contig690.F mRNA sequence
          Length = 811

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 433 gcctcggtgaggtggatgccatcccagctgacgtgcgc 470
           |||||||||||||||||||| |||||||||| ||||||
Sbjct: 501 gcctcggtgaggtggatgccgtcccagctgaggtgcgc 464
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                 
Query: 412     ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
               |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 6282189 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 6282140



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 426     gtagggcgcctcggtgaggtggatgccatcccagctga 463
               ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 6380765 gtaggccgcctccgtgaggtggatgccgtcccagctga 6380728



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 426     gtagggcgcctcggtgaggtggatgccatcccagctga 463
               ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 6365985 gtaggccgcctccgtgaggtggatgccgtcccagctga 6365948



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 424     cggtagggcgcctcggtgaggtggatgccatcccag 459
               |||||||  |||||||||||||| ||||||||||||
Sbjct: 6269470 cggtaggcagcctcggtgaggtgaatgccatcccag 6269435



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 426     gtagggcgcctcggtgaggtggatgccatcccag 459
               ||||| |||||| |||||||||||||| ||||||
Sbjct: 6342896 gtaggccgcctccgtgaggtggatgccgtcccag 6342863
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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0038J17
          Length = 180186

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 412    ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
              |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 144387 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 144338



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 424    cggtagggcgcctcggtgaggtggatgccatcccag 459
              |||||||  |||||||||||||| ||||||||||||
Sbjct: 131668 cggtaggcagcctcggtgaggtgaatgccatcccag 131633
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 412   ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
             |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 53255 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 53206



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 426    gtagggcgcctcggtgaggtggatgccatcccagctga 463
              ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 151831 gtaggccgcctccgtgaggtggatgccgtcccagctga 151794



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 426    gtagggcgcctcggtgaggtggatgccatcccagctga 463
              ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 137051 gtaggccgcctccgtgaggtggatgccgtcccagctga 137014



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 424   cggtagggcgcctcggtgaggtggatgccatcccag 459
             |||||||  |||||||||||||| ||||||||||||
Sbjct: 40536 cggtaggcagcctcggtgaggtgaatgccatcccag 40501



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 426    gtagggcgcctcggtgaggtggatgccatcccag 459
              ||||| |||||| |||||||||||||| ||||||
Sbjct: 113962 gtaggccgcctccgtgaggtggatgccgtcccag 113929
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>dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D10, full
           insert sequence
          Length = 1356

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 412 ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
           |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 985 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 936
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>dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E04, full
            insert sequence
          Length = 1583

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 412  ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
            |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 1213 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 1164
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>dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F04, full
           insert sequence
          Length = 1356

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 412 ttggcgatgaagcggtagggcgcctcggtgaggtggatgccatcccagct 461
           |||||||||  || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 985 ttggcgatgtggccgtaggacgcctcggtgaggtggatgccgtcccagct 936
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>gb|BT009331.1| Triticum aestivum clone wlm24.pk0027.a6:fis, full insert mRNA
            sequence
          Length = 1634

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 433  gcctcggtgaggtggatgccatcccagctgacgtgcg 469
            |||||||||||||||||||| |||||||||| |||||
Sbjct: 1180 gcctcggtgaggtggatgccgtcccagctgaggtgcg 1144
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>gb|AY103823.1| Zea mays PCO141891 mRNA sequence
          Length = 1313

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 433  gcctcggtgaggtggatgccatcccagctgacgtgcg 469
            |||||||||||||||||||| |||||||||| |||||
Sbjct: 1131 gcctcggtgaggtggatgccgtcccagctgaggtgcg 1095
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>ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa8155 predicted mRNA
          Length = 1110

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 426  gtagggcgcctcggtgaggtggatgccatcccagctga 463
            ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 1038 gtaggccgcctccgtgaggtggatgccgtcccagctga 1001
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>ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa8151 predicted mRNA
          Length = 1137

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 426  gtagggcgcctcggtgaggtggatgccatcccagctga 463
            ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 1065 gtaggccgcctccgtgaggtggatgccgtcccagctga 1028
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0665D10
          Length = 134967

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 426  gtagggcgcctcggtgaggtggatgccatcccagctga 463
            ||||| |||||| |||||||||||||| ||||||||||
Sbjct: 3160 gtaggccgcctccgtgaggtggatgccgtcccagctga 3123
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 433     gcctcggtgaggtggatgccatcccagct 461
               |||||||||||||||||||| ||||||||
Sbjct: 2907403 gcctcggtgaggtggatgccgtcccagct 2907431
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>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046E09
          Length = 146776

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 433   gcctcggtgaggtggatgccatcccagct 461
             |||||||||||||||||||| ||||||||
Sbjct: 67549 gcctcggtgaggtggatgccgtcccagct 67577
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>dbj|AK066113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051I09, full
            insert sequence
          Length = 1392

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 433  gcctcggtgaggtggatgccatcccagct 461
            |||||||||||||||||||| ||||||||
Sbjct: 1029 gcctcggtgaggtggatgccgtcccagct 1001
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>ref|NM_188436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1095

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 424  cggtagggcgcctcggtgaggtggatgccatcccag 459
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1037 cggtaggcagcctcggtgaggtgaatgccatcccag 1002
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>dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B12, full
            insert sequence
          Length = 1772

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 424  cggtagggcgcctcggtgaggtggatgccatcccag 459
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1470 cggtaggcagcctcggtgaggtgaatgccatcccag 1435
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>dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K20, full
            insert sequence
          Length = 1416

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 424  cggtagggcgcctcggtgaggtggatgccatcccag 459
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1114 cggtaggcagcctcggtgaggtgaatgccatcccag 1079
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>gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0001I22,
              complete sequence
          Length = 162413

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 439    gtgaggtggatgccatcccagct 461
              |||||||||||||||||||||||
Sbjct: 101231 gtgaggtggatgccatcccagct 101209
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>gb|BT008971.1| Triticum aestivum clone wdk1c.pk023.m3:fis, full insert mRNA sequence
          Length = 1472

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 388  gcgtaggggcccttgagccaggtgttggcgatgaagcggtagggcgcctcggtgaggtgg 447
            ||||||||||| ||||||||   |||||| |  | ||||||||  |||||||| | ||||
Sbjct: 1151 gcgtaggggccgttgagccaaccgttggccaccatgcggtaggcggcctcggtcatgtgg 1092

                               
Query: 448  atgccatcccagctgacgt 466
            ||||| |||||||| ||||
Sbjct: 1091 atgccgtcccagctcacgt 1073
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 439      gtgaggtggatgccatcccagct 461
                |||||||||||||||||||||||
Sbjct: 18137398 gtgaggtggatgccatcccagct 18137420
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>dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D07, full
            insert sequence
          Length = 1311

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 439  gtgaggtggatgccatcccagct 461
            |||||||||||||||||||||||
Sbjct: 1132 gtgaggtggatgccatcccagct 1110
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 439      gtgaggtggatgccatcccagct 461
                |||||||||||||||||||||||
Sbjct: 18265974 gtgaggtggatgccatcccagct 18265952
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>ref|NM_188451.1| Oryza sativa (japonica cultivar-group), Ozsa8146 predicted mRNA
          Length = 1194

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 426  gtagggcgcctcggtgaggtggatgccatcccag 459
            ||||| |||||| |||||||||||||| ||||||
Sbjct: 1071 gtaggccgcctccgtgaggtggatgccgtcccag 1038
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>ref|XM_476139.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 433  gcctcggtgaggtggatgccatcccagctgacgt 466
            ||||||||||| |||||||| |||||| ||||||
Sbjct: 1064 gcctcggtgagatggatgccgtcccagttgacgt 1031
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>gb|AY581127.1| Azorhizobium caulinodans strain ORS571 hydrogenase gene cluster,
             complete sequence
          Length = 21000

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 414   ggcgatgaagcggtagggcgcc 435
             ||||||||||||||||||||||
Sbjct: 18419 ggcgatgaagcggtagggcgcc 18398
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>gb|AC006987.2|AC006987 Homo sapiens BAC clone RP11-160K17 from Y, complete sequence
          Length = 166041

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 228   cgcaggcacacacgcacacgga 249
             ||||||||||||||||||||||
Sbjct: 80353 cgcaggcacacacgcacacgga 80374
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>dbj|AK104443.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G04, full
            insert sequence
          Length = 1526

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 426  gtagggcgcctcggtgaggtggatgccatcccag 459
            ||||| |||||| |||||||||||||| ||||||
Sbjct: 1141 gtaggccgcctccgtgaggtggatgccgtcccag 1108
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>dbj|AK058429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E09, full
            insert sequence
          Length = 1531

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 426  gtagggcgcctcggtgaggtggatgccatcccag 459
            ||||| |||||| |||||||||||||| ||||||
Sbjct: 1141 gtaggccgcctccgtgaggtggatgccgtcccag 1108
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 227    ccgcaggcacacacgcacacg 247
              |||||||||||||||||||||
Sbjct: 937691 ccgcaggcacacacgcacacg 937671
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>ref|XM_838242.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1159)
            partial mRNA
          Length = 4515

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 227  ccgcaggcacacacgcacacg 247
            |||||||||||||||||||||
Sbjct: 1887 ccgcaggcacacacgcacacg 1867
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>gb|AY108995.1| Zea mays PCO109727 mRNA sequence
          Length = 847

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 433 gcctcggtgaggtggatgccatcccagct 461
           ||||| |||||||||||||| ||||||||
Sbjct: 323 gcctccgtgaggtggatgccgtcccagct 295
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>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence
          Length = 176889

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 392   aggggcccttgagccaggtgttgg 415
             |||||||||||||||||| |||||
Sbjct: 55877 aggggcccttgagccaggcgttgg 55854
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    cgcaggcacacacgcacacg 247
              ||||||||||||||||||||
Sbjct: 172354 cgcaggcacacacgcacacg 172373
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>emb|AM085514.1| Triticum aestivum mRNA for autophagy protein 9 (atg9 gene)
          Length = 3141

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 254  tatgaaggcgtggttcacac 273
            ||||||||||||||||||||
Sbjct: 2947 tatgaaggcgtggttcacac 2928
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>gb|AC093323.3| Homo sapiens BAC clone RP11-539L10 from 4, complete sequence
          Length = 195576

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   cacacacgcacacggaattg 253
             ||||||||||||||||||||
Sbjct: 23437 cacacacgcacacggaattg 23418
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>ref|XM_695238.1| PREDICTED: Danio rerio similar to P2Y purinoceptor 2 (P2Y2) (P2U
           purinoceptor 1) (P2U1) (ATP receptor) (Purinergic
           receptor) (LOC571633), mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 tgagccaggtgttggcgatg 420
           ||||||||||||||||||||
Sbjct: 651 tgagccaggtgttggcgatg 670
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>gb|AY104167.1| Zea mays PCO062696 mRNA sequence
          Length = 1460

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 432  cgcctcggtgaggtggatgccatcccagctga 463
            |||||| || ||||||||||| ||||||||||
Sbjct: 1093 cgcctccgtcaggtggatgccgtcccagctga 1062


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,649,001
Number of Sequences: 3902068
Number of extensions: 2649001
Number of successful extensions: 58377
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58117
Number of HSP's gapped (non-prelim): 261
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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