ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CNGT1_ARATH (Q9FI99) Cytokinin-N-glucosyltransferase 1 (EC 2.4.1.-) 33 0.30
2CNGT2_ARATH (Q9FIA0) Cytokinin-N-glucosyltransferase 2 (EC 2.4.1.-) 33 0.39
3NDF1_XENLA (Q91616) Neurogenic differentiation factor 1 (NeuroD1) 32 1.1
4FPG_PHOPR (Q6LVN0) Formamidopyrimidine-DNA glycosylase (EC 3.2.2... 30 2.5
5CZOG_SORBI (Q6JAH0) Putative cis-zeatin O-glucosyltransferase (E... 30 3.3
6CZOG1_MAIZE (Q93XP7) Cis-zeatin O-glucosyltransferase 1 (EC 2.4.... 30 3.3
7CZOG2_MAIZE (Q8RXA5) Cis-zeatin O-glucosyltransferase 2 (EC 2.4.... 30 3.3
8COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor 29 5.6
9CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor 29 7.3
10CRIM1_MOUSE (Q9JLL0) Cysteine-rich motor neuron 1 protein precur... 29 7.3
11FPG_MANSM (Q65R59) Formamidopyrimidine-DNA glycosylase (EC 3.2.2... 28 9.6

>CNGT1_ARATH (Q9FI99) Cytokinin-N-glucosyltransferase 1 (EC 2.4.1.-)|
          Length = 464

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
 Frame = -1

Query: 476 DQQINSRFMGAVWGSGLDMK---DVCXXXXXXXXXXXXXXXXELRRSAQALAQQVRRDIA 306
           DQ +N+RF+  VW  G+ ++   +                  E+R   + L  +VRR + 
Sbjct: 379 DQFVNARFISEVWRVGIHLEGRIERREIERAVIRLMVESKGEEIRGRIKVLRDEVRRSVK 438

Query: 305 QGGSSAKEFKRLV---GFIIELSIST 237
           QGGSS +    LV     IIE  + T
Sbjct: 439 QGGSSYRSLDELVDRISIIIEPLVPT 464



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>CNGT2_ARATH (Q9FIA0) Cytokinin-N-glucosyltransferase 2 (EC 2.4.1.-)|
          Length = 450

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 476 DQQINSRFMGAVWGSGLDMK---DVCXXXXXXXXXXXXXXXXELRRSAQALAQQVRRDIA 306
           DQ +NSRF+  +W  G+ ++   +                  ++R   + L  +V + + 
Sbjct: 372 DQMLNSRFVSDIWKIGIHLEGRIEKKEIEKAVRVLMEESEGNKIRERMKVLKDEVEKSVK 431

Query: 305 QGGSSAKEFKRLVGFIIEL 249
           QGGSS +  + L   I+ L
Sbjct: 432 QGGSSFQSIETLANHILLL 450



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>NDF1_XENLA (Q91616) Neurogenic differentiation factor 1 (NeuroD1)|
          Length = 352

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 309 DVPSHLLRQCLSRSP*LDGLH----GLPHHPFHDGPLAHVFHVQPRAPDGAHEPTVD 467
           D+ SH+  Q  S S  L G      GLP  P+     +HVFHV+P +   A EP  D
Sbjct: 203 DIQSHM--QTASSSFPLQGYPYQSPGLPSPPYGTMDSSHVFHVKPHSYGAALEPFFD 257



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>FPG_PHOPR (Q6LVN0) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 268

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -1

Query: 311 IAQGGSSAKEFKRLVG----FIIELSISTRGSTPSP--DKE*GPAGIGTLLSMLLCESCQ 150
           I QGG++ K+FK   G    F  EL +  +G  P P  D       IG   S + C  CQ
Sbjct: 209 IEQGGTTLKDFKNADGKPGYFAQELQVYGKGGKPCPRCDNPLSEMKIGQRAS-VFCSECQ 267

Query: 149 K 147
           K
Sbjct: 268 K 268



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>CZOG_SORBI (Q6JAH0) Putative cis-zeatin O-glucosyltransferase (EC 2.4.1.215)|
          Length = 466

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 356 LRRSAQALAQQVRRDIAQGGSSAKEFKRLVGFI 258
           +R+ A+ L + VR  +A GG+S K+    +G+I
Sbjct: 432 VRQRAKELGEAVRASVADGGNSRKDLDDFIGYI 464



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>CZOG1_MAIZE (Q93XP7) Cis-zeatin O-glucosyltransferase 1 (EC 2.4.1.215)|
           (cisZOG1)
          Length = 467

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 356 LRRSAQALAQQVRRDIAQGGSSAKEFKRLVGFI 258
           +R+ A+ L + VR  +A GG+S K+    +G+I
Sbjct: 433 VRQRAKELGEAVRASVADGGNSRKDLDDFIGYI 465



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>CZOG2_MAIZE (Q8RXA5) Cis-zeatin O-glucosyltransferase 2 (EC 2.4.1.215)|
           (cisZOG2)
          Length = 463

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 356 LRRSAQALAQQVRRDIAQGGSSAKEFKRLVGFI 258
           +R+ A+ L + VR  +A GG+S K+    +G+I
Sbjct: 429 VRQRAKELGEAVRASVADGGNSRKDLDDFIGYI 461



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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = -2

Query: 457  GSWAPSGARGWT*KTCARGPSWNGW*GRPWSPSS*G 350
            G   P G RG+T K  A GP   G  GRP SP S G
Sbjct: 2833 GPMGPPGDRGFTGKDSAMGP--RGPPGRPGSPGSPG 2866



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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 363 GLHGLPHHPFHDGPLAHVFHVQPRAPDGAHEP 458
           G  G+P  P  DGPL H  H  P    GA  P
Sbjct: 668 GNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGP 699



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>CRIM1_MOUSE (Q9JLL0) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Fragment)
          Length = 1028

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +1

Query: 52  KHRSELSRCNVVSHGFSSNKC-HFKLALSCPSAFWQDSHSNIDNK---VPMPAGPYSLSG 219
           KH  ++ RC          KC     +  CP  F QDSH  +  K   VP  AGP  LSG
Sbjct: 547 KHGCDICRCK---------KCPELPCSKICPLGFQQDSHGCLICKCREVPPSAGPPVLSG 597



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>FPG_MANSM (Q65R59) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)|
           (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic
           site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM)
          Length = 269

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
 Frame = -1

Query: 341 QALAQQVRRDIAQGGSSAKEFKRLVG----FIIELSISTRGSTPSPDKE*GPAGIGTLLS 174
           + + Q+++R I QGG++ K+F +  G    F  EL I  +   P P+        GT + 
Sbjct: 199 EKIKQELKRAIEQGGTTLKDFLQPDGRPGYFAQELQIYGKKGAPCPN-------CGTKIE 251

Query: 173 MLL--------CESCQK 147
            L+        C  CQK
Sbjct: 252 SLVVAQRNSYFCPKCQK 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,976,113
Number of Sequences: 219361
Number of extensions: 1195721
Number of successful extensions: 3487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3483
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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