ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full... 628 e-177
2dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 4e-69
3ref|XM_475647.1| Oryza sativa (japonica cultivar-group), predic... 268 1e-68
4ref|XM_550215.1| Oryza sativa (japonica cultivar-group), mRNA 230 3e-57
5dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
6gb|AY107473.1| Zea mays PCO132850 mRNA sequence 196 4e-47
7gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome... 129 9e-27
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
10dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
11dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
12gb|AY110040.1| Zea mays CL716_1 mRNA sequence 103 5e-19
13gb|AY600434.1| Tropaeolum majus putative short-chain acyl-CoA ox... 52 0.002
14ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4);... 48 0.025
15gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complet... 48 0.025
16gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complet... 48 0.025
17dbj|AK222131.1| Arabidopsis thaliana mRNA for Short-chain acyl C... 48 0.025
18gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete se... 48 0.025
19dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl C... 48 0.025
20gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehy... 48 0.025
21gb|AC091152.18| Homo sapiens chromosome 17, clone RP11-1072C15, ... 42 1.6
22gb|AC040970.7| Homo sapiens chromosome 8, clone RP11-809O17, com... 42 1.6
23gb|AC010422.7| Homo sapiens chromosome 19 clone CTD-2192J16, com... 42 1.6
24gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, compl... 42 1.6
25gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, comp... 42 1.6
26gb|AC068056.7| Homo sapiens BAC clone RP11-84M3 from 2, complete... 42 1.6
27gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Canc... 42 1.6
28emb|Z81042.1|CEC27H6 Caenorhabditis elegans Cosmid C27H6, comple... 40 6.2
29gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome... 40 6.2
30gb|AC099849.4| Homo sapiens chromosome 18, clone RP11-863N1, com... 40 6.2
31emb|CR857871.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0226 (from cl... 40 6.2
32gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, c... 40 6.2
33gb|AC006546.9| Homo sapiens chromosome 18 clone p1-1029 map 18q1... 40 6.2
34gb|AC006545.3| Homo sapiens chromosome 18 clone p1-1028 map 18q1... 40 6.2 
>gb|BT009431.1| Triticum aestivum clone wlmk1.pk0035.e4:fis, full insert mRNA
            sequence
          Length = 1652

 Score =  628 bits (317), Expect = e-177
 Identities = 394/421 (93%), Gaps = 1/421 (0%)
 Strand = Plus / Minus

                                                                        
Query: 37   acaaatccagctccgactttatccttccgccttacaaattacatttgatcattccattgc 96
            |||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||  ||||
Sbjct: 1576 acaaatccagctccgactttattctttcgctttacagattacatttgatcattcggttgc 1517

                                                                        
Query: 97   acttattccgatcttactcgtacccaccagaatacaannnnnnnnntcatactttgctgt 156
            |||||||||||||||||||||||||||||||||||||         ||||||||||||||
Sbjct: 1516 acttattccgatcttactcgtacccaccagaatacaagggggggg-tcatactttgctgt 1458

                                                                        
Query: 157  tcatcgtagctggaggcagaagaagaattacagccgagattttgctactgcagcgggttt 216
            |||||  ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 1457 tcatcaaagctggaggcagaagaagaattacagccgagatttcgctaccgcagcaggttt 1398

                                                                        
Query: 217  gaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtgcc 276
            ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1397 gaagctcgcgatcccggtgatttctcttccggtcacaaggctgttgatgtcgtaggtgcc 1338

                                                                        
Query: 277  ctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagccaa 336
            ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 1337 ctcatatgagtaaatcggttccagatcgcagaacgcctttgctactaaaaaatcagccaa 1278

                                                                        
Query: 337  aattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctgga 396
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1277 aattccattgccgcccaatagctctcggcccagagaaactacctcccttgacttgctgga 1218

                                                                        
Query: 397  cgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagctt 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 cgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagctt 1158

             
Query: 457  g 457
            |
Sbjct: 1157 g 1157
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>dbj|AK071561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099O18, full
            insert sequence
          Length = 1568

 Score =  270 bits (136), Expect = 4e-69
 Identities = 241/276 (87%)
 Strand = Plus / Minus

                                                                        
Query: 182  aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 241
            ||||| || ||||||||||  | |||||| ||||||||||| ||||| || ||||| |||
Sbjct: 1417 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 1358

                                                                        
Query: 242  cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 301
            ||||||||||| | ||||||||||||||||||||| ||||| ||| | || |||||||||
Sbjct: 1357 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 1298

                                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctct 361
            |||||||||||||||||||| ||||| |||||||||||||| || || |||| |||||| 
Sbjct: 1297 tcacagaacgcctttgctaccagaaagtcagccaaaattccgtttccacccagtagctca 1238

                                                                        
Query: 362  cgacccagagaaactacctcccttgacttgctggacgtccatgccttgcccaaactagca 421
            || || |||||||| |||||||| | |||  |||| |||||||||||||| |||||||||
Sbjct: 1237 cggccaagagaaaccacctccctagccttcttggatgtccatgccttgcctaaactagca 1178

                                                
Query: 422  tggcctggtgtcattttgcctgactcatagagcttg 457
            ||||||||||||||||||||||| ||||| ||||||
Sbjct: 1177 tggcctggtgtcattttgcctgattcatacagcttg 1142
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>ref|XM_475647.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1293

 Score =  268 bits (135), Expect = 1e-68
 Identities = 234/267 (87%)
 Strand = Plus / Minus

                                                                        
Query: 191  cgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggtc 250
            ||||||||||  | |||||| ||||||||||| ||||| || ||||| ||||||||||||
Sbjct: 1286 cgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctctcttccggtc 1227

                                                                        
Query: 251  acaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaac 310
            || | ||||||||||||||||||||| ||||| ||| | || ||||||||||||||||||
Sbjct: 1226 accaagctgttgatgtcataggtgccttcgtacgagaagattggctccagatcacagaac 1167

                                                                        
Query: 311  gcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccaga 370
            ||||||||||| ||||| |||||||||||||| || || |||| |||||| || || |||
Sbjct: 1166 gcctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaaga 1107

                                                                        
Query: 371  gaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctggt 430
            ||||| |||||||| | |||  |||| |||||||||||||| ||||||||||||||||||
Sbjct: 1106 gaaaccacctccctagccttcttggatgtccatgccttgcctaaactagcatggcctggt 1047

                                       
Query: 431  gtcattttgcctgactcatagagcttg 457
            |||||||||||||| ||||| ||||||
Sbjct: 1046 gtcattttgcctgattcatacagcttg 1020
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>ref|XM_550215.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1979

 Score =  230 bits (116), Expect = 3e-57
 Identities = 230/268 (85%)
 Strand = Plus / Minus

                                                                        
Query: 190  ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 249
            ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363

                                                                        
Query: 250  cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 309
            ||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303

                                                                        
Query: 310  cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 369
             |||||||| |||||||||||||||||||||||||| || ||||| |  |||||||| ||
Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243

                                                                        
Query: 370  agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 429
            |||||| ||||| |  | | | ||||| |||||  |||| || ||||||||||| |||||
Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183

                                        
Query: 430  tgtcattttgcctgactcatagagcttg 457
            ||||||||| ||||||||||| ||||||
Sbjct: 1182 tgtcattttccctgactcataaagcttg 1155
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>dbj|AK100550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023103E08, full
            insert sequence
          Length = 1979

 Score =  230 bits (116), Expect = 3e-57
 Identities = 230/268 (85%)
 Strand = Plus / Minus

                                                                        
Query: 190  ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 249
            ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 1422 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 1363

                                                                        
Query: 250  cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 309
            ||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1362 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 1303

                                                                        
Query: 310  cgcctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccag 369
             |||||||| |||||||||||||||||||||||||| || ||||| |  |||||||| ||
Sbjct: 1302 tgcctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgag 1243

                                                                        
Query: 370  agaaactacctcccttgacttgctggacgtccatgccttgcccaaactagcatggcctgg 429
            |||||| ||||| |  | | | ||||| |||||  |||| || ||||||||||| |||||
Sbjct: 1242 agaaaccacctcacgagccattctggaagtccaacccttccctaaactagcatgccctgg 1183

                                        
Query: 430  tgtcattttgcctgactcatagagcttg 457
            ||||||||| ||||||||||| ||||||
Sbjct: 1182 tgtcattttccctgactcataaagcttg 1155
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>gb|AY107473.1| Zea mays PCO132850 mRNA sequence
          Length = 1709

 Score =  196 bits (99), Expect = 4e-47
 Identities = 207/243 (85%)
 Strand = Plus / Minus

                                                                        
Query: 215  ttgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtg 274
            ||||||||||||||||| ||||| ||||| || | ||| ||||| || ||||||||||||
Sbjct: 1421 ttgaagctcgcgatcccggtgatctctctgccagccaccaggctattaatgtcataggtg 1362

                                                                        
Query: 275  ccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcc 334
            |||||||| ||| |||| || ||||  ||||| || ||||| || || ||||||||| ||
Sbjct: 1361 ccctcgtacgagaaaatgggttccacgtcacaaaatgccttggcgacaagaaaatcaacc 1302

                                                                        
Query: 335  aaaattccattgccgcccaatagctctcgacccagagaaactacctcccttgacttgctg 394
            ||||| |||||||| |||| ||||||||| || |||||||| |||||||| | |||  ||
Sbjct: 1301 aaaatgccattgccacccagtagctctcgcccaagagaaaccacctccctggccttcttg 1242

                                                                        
Query: 395  gacgtccatgccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagc 454
            |||||||||||||| || |||||||   |||||||||||||||||||||||||||| |||
Sbjct: 1241 gacgtccatgccttacctaaactagaccggcctggtgtcattttgcctgactcatacagc 1182

               
Query: 455  ttg 457
            |||
Sbjct: 1181 ttg 1179
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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score =  129 bits (65), Expect = 9e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                         
Query: 182   aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 241
             ||||| || ||||||||||  | |||||| ||||||||||| ||||| || ||||| |||
Sbjct: 92742 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 92801

                                                                         
Query: 242   cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 301
             ||||||||||| | ||||||||||||||||||||| ||||| ||| | || |||||||||
Sbjct: 92802 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 92861

                          
Query: 302   tcacagaacgcct 314
             |||||||||||||
Sbjct: 92862 tcacagaacgcct 92874



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                  
Query: 405   ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttg 457
             ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 93712 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttg 93764



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                         
Query: 312   cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 371
             |||||||||| ||||| |||||||||||||| || || |||| |||||| || || ||||
Sbjct: 93498 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 93557

                                                 
Query: 372   aaactacctcccttgacttgctggacgtccatgcct 407
             |||| |||||||| | |||  |||| ||||||||||
Sbjct: 93558 aaaccacctccctagccttcttggatgtccatgcct 93593
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  129 bits (65), Expect = 9e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                           
Query: 182     aattacagccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttct 241
               ||||| || ||||||||||  | |||||| ||||||||||| ||||| || ||||| |||
Sbjct: 3670395 aattaaagacgagattttgtcaatgcagcaggtttgaagctggcgattccggtgatctct 3670454

                                                                           
Query: 242     cttccggtcacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccaga 301
               ||||||||||| | ||||||||||||||||||||| ||||| ||| | || |||||||||
Sbjct: 3670455 cttccggtcaccaagctgttgatgtcataggtgccttcgtacgagaagattggctccaga 3670514

                            
Query: 302     tcacagaacgcct 314
               |||||||||||||
Sbjct: 3670515 tcacagaacgcct 3670527



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Plus

                                                                    
Query: 405     ccttgcccaaactagcatggcctggtgtcattttgcctgactcatagagcttg 457
               ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 3671365 ccttgcctaaactagcatggcctggtgtcattttgcctgattcatacagcttg 3671417



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                           
Query: 312     cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 371
               |||||||||| ||||| |||||||||||||| || || |||| |||||| || || ||||
Sbjct: 3671151 cctttgctaccagaaagtcagccaaaattccgtttccacccagtagctcacggccaagag 3671210

                                                   
Query: 372     aaactacctcccttgacttgctggacgtccatgcct 407
               |||| |||||||| | |||  |||| ||||||||||
Sbjct: 3671211 aaaccacctccctagccttcttggatgtccatgcct 3671246
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                           
Query: 190     ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 249
               ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 3107674 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 3107733

                                                                           
Query: 250     cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 309
               ||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||
Sbjct: 3107734 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 3107793

                    
Query: 310     cgcct 314
                ||||
Sbjct: 3107794 tgcct 3107798



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                           
Query: 312     cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 371
               ||||||| |||||||||||||||||||||||||| || ||||| |  |||||||| ||||
Sbjct: 3107878 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 3107937

                         
Query: 372     aaactacctc 381
               |||| |||||
Sbjct: 3107938 aaaccacctc 3107947



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                            
Query: 413     aaactagcatggcctggtgtcattttgcctgactcatagagcttg 457
               ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 3108089 aaactagcatgccctggtgtcattttccctgactcataaagcttg 3108133
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>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0041E11
          Length = 146335

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                         
Query: 190   ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 249
             ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 51462 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 51521

                                                                         
Query: 250   cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 309
             ||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||
Sbjct: 51522 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 51581

                  
Query: 310   cgcct 314
              ||||
Sbjct: 51582 tgcct 51586



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 312   cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 371
             ||||||| |||||||||||||||||||||||||| || ||||| |  |||||||| ||||
Sbjct: 51666 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 51725

                       
Query: 372   aaactacctc 381
             |||| |||||
Sbjct: 51726 aaaccacctc 51735



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                          
Query: 413   aaactagcatggcctggtgtcattttgcctgactcatagagcttg 457
             ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 51877 aaactagcatgccctggtgtcattttccctgactcataaagcttg 51921
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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score =  121 bits (61), Expect = 2e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                         
Query: 190   ccgagattttgctactgcagcgggtttgaagctcgcgatcccagtgatttctcttccggt 249
             ||||| |||||||| ||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct: 75714 ccgagcttttgctaatgcggcaggtttgaagcttgcgatcccagttatttctctaccagt 75773

                                                                         
Query: 250   cacaaggctgttgatgtcataggtgccctcgtatgagtaaatcggctccagatcacagaa 309
             ||| |||||||||||||| || ||||| ||||||||||| || |||||||| ||||||||
Sbjct: 75774 caccaggctgttgatgtcgtatgtgccttcgtatgagtatataggctccaggtcacagaa 75833

                  
Query: 310   cgcct 314
              ||||
Sbjct: 75834 tgcct 75838



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 312   cctttgctactagaaaatcagccaaaattccattgccgcccaatagctctcgacccagag 371
             ||||||| |||||||||||||||||||||||||| || ||||| |  |||||||| ||||
Sbjct: 75918 cctttgcaactagaaaatcagccaaaattccatttccacccaacaattctcgaccgagag 75977

                       
Query: 372   aaactacctc 381
             |||| |||||
Sbjct: 75978 aaaccacctc 75987



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                          
Query: 413   aaactagcatggcctggtgtcattttgcctgactcatagagcttg 457
             ||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 76129 aaactagcatgccctggtgtcattttccctgactcataaagcttg 76173
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>gb|AY110040.1| Zea mays CL716_1 mRNA sequence
          Length = 1802

 Score =  103 bits (52), Expect = 5e-19
 Identities = 106/124 (85%)
 Strand = Plus / Minus

                                                                        
Query: 216  tgaagctcgcgatcccagtgatttctcttccggtcacaaggctgttgatgtcataggtgc 275
            |||||||||||||||| ||||  || || |||||||| |||||||||||||| || ||||
Sbjct: 1385 tgaagctcgcgatcccggtgacctccctgccggtcaccaggctgttgatgtcgtacgtgc 1326

                                                                        
Query: 276  cctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatcagcca 335
            ||||||| ||||| || |||||||| || ||||||||||| ||||| || || || ||||
Sbjct: 1325 cctcgtacgagtagatgggctccaggtcgcagaacgccttggctacaaggaagtcggcca 1266

                
Query: 336  aaat 339
            ||||
Sbjct: 1265 aaat 1262
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>gb|AY600434.1| Tropaeolum majus putative short-chain acyl-CoA oxidase mRNA, complete
            cds
          Length = 1553

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 272  gtgccctcgtatgagtaaatcggctccagatcacagaacgcctttgctactagaaaatca 331
            ||||| |||||||  || || ||||||| |||||| || ||||| || ||||||||||||
Sbjct: 1291 gtgccttcgtatgtatagatgggctccaaatcacaaaatgccttggcaactagaaaatca 1232

                          
Query: 332  gccaaaattccatt 345
            |  |||||||||||
Sbjct: 1231 gataaaattccatt 1218
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>ref|NM_115043.2| Arabidopsis thaliana ACX4 (ACYL-COA OXIDASE 4); oxidoreductase
            AT3G51840 (ACX4) mRNA, complete cds
          Length = 1759

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
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>gb|AY125536.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds
          Length = 1311

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1199 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1156
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>gb|AY094441.1| Arabidopsis thaliana At3g51840/AtG6 mRNA, complete cds
          Length = 1718

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1354 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1311
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>dbj|AK222131.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase,
           complete cds, clone: RAFL22-95-I12
          Length = 853

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 302 tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
           |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 507 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 464
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>gb|AY087793.1| Arabidopsis thaliana clone 3844 mRNA, complete sequence
          Length = 1626

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1257 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1214
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>dbj|AB017643.1| Arabidopsis thaliana mRNA for Short-chain acyl CoA oxidase, complete
            cds
          Length = 1593

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1238 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1195
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>gb|U72505.1|ATU72505 Arabidopsis thaliana putative acyl-coA dehydrogenase G6p (AtG6) mRNA,
            complete cds
          Length = 1579

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 302  tcacagaacgcctttgctactagaaaatcagccaaaattccatt 345
            |||||||| ||||||||||| |||||||| || | |||||||||
Sbjct: 1224 tcacagaaagcctttgctaccagaaaatctgctagaattccatt 1181
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>gb|AC091152.18| Homo sapiens chromosome 17, clone RP11-1072C15, complete sequence
          Length = 181835

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    agccgagattttgctactgca 208
              |||||||||||||||||||||
Sbjct: 138496 agccgagattttgctactgca 138516
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>gb|AC040970.7| Homo sapiens chromosome 8, clone RP11-809O17, complete sequence
          Length = 183894

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agccgagattttgctactgca 208
             |||||||||||||||||||||
Sbjct: 58833 agccgagattttgctactgca 58813
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>gb|AC010422.7| Homo sapiens chromosome 19 clone CTD-2192J16, complete sequence
          Length = 203790

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agccgagattttgctactgca 208
             |||||||||||||||||||||
Sbjct: 91681 agccgagattttgctactgca 91661
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>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence
          Length = 160545

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 188   agccgagattttgctactgca 208
             |||||||||||||||||||||
Sbjct: 49090 agccgagattttgctactgca 49070
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>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence
          Length = 180535

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   agccgagattttgctactgca 208
             |||||||||||||||||||||
Sbjct: 83803 agccgagattttgctactgca 83823
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>gb|AC068056.7| Homo sapiens BAC clone RP11-84M3 from 2, complete sequence
          Length = 193017

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    agccgagattttgctactgca 208
              |||||||||||||||||||||
Sbjct: 103599 agccgagattttgctactgca 103619
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>gb|AC097264.4| Pan troglodytes BAC RP43-175I2 (Roswell Park Cancer Institute Male
              Chimpanzee BAC Library) complete sequence
          Length = 173720

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    agccgagattttgctactgca 208
              |||||||||||||||||||||
Sbjct: 135530 agccgagattttgctactgca 135510
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>emb|Z81042.1|CEC27H6 Caenorhabditis elegans Cosmid C27H6, complete sequence
          Length = 24775

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   aaaattccattgccgcccaa 354
             ||||||||||||||||||||
Sbjct: 13010 aaaattccattgccgcccaa 12991
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>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence
          Length = 153028

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   cacaaggctgttgatgtcat 269
             ||||||||||||||||||||
Sbjct: 94000 cacaaggctgttgatgtcat 93981
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>gb|AC099849.4| Homo sapiens chromosome 18, clone RP11-863N1, complete sequence
          Length = 200606

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     atttgatcattccattgcac 98
              ||||||||||||||||||||
Sbjct: 137918 atttgatcattccattgcac 137899
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>emb|CR857871.1| Pongo pygmaeus mRNA; cDNA DKFZp459M0226 (from clone DKFZp459M0226)
          Length = 4240

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 311  gcctttgctactagaaaatc 330
            ||||||||||||||||||||
Sbjct: 2882 gcctttgctactagaaaatc 2863
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>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence
          Length = 166125

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    caaattacatttgatcattccatt 94
             |||||||||||| |||||||||||
Sbjct: 78514 caaattacattttatcattccatt 78491
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>gb|AC006546.9| Homo sapiens chromosome 18 clone p1-1029 map 18q11, complete sequence
          Length = 79128

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    atttgatcattccattgcac 98
             ||||||||||||||||||||
Sbjct: 66460 atttgatcattccattgcac 66441
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>gb|AC006545.3| Homo sapiens chromosome 18 clone p1-1028 map 18q11, complete sequence
          Length = 78735

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    atttgatcattccattgcac 98
             ||||||||||||||||||||
Sbjct: 52210 atttgatcattccattgcac 52191


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,500,964
Number of Sequences: 3902068
Number of extensions: 3500964
Number of successful extensions: 60317
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60221
Number of HSP's gapped (non-prelim): 94
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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