ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart19h02 |
|---|---|
| Clone Library Name | barley_pub |
>DNJ10_ARATH (Q8GYX8) Chaperone protein dnaJ 10 (AtJ10) (AtDjC10)| Length = 398 Score = 62.8 bits (151), Expect = 5e-10 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Frame = -3 Query: 511 LQDGMKKV--EEGANKEEQLMKSFEEKKEAMLNSLWKINVVDIESTLSRVCQAVLKDSTV 338 LQ+ MK+ EG EE+L + + K M++SLWK+NV DIE+TL RVCQ VL+D Sbjct: 233 LQEEMKRQLNTEGNYTEEELEEYLQAHKRVMIDSLWKLNVADIEATLCRVCQLVLQDPEA 292 Query: 337 SKDVXXXXXXXXXXXGTIFQGAKSLYHRENSLRVESPMEGEGTTSSH 197 ++ G IFQ AK+ + L P + G +H Sbjct: 293 KREELRTRARGLKALGRIFQRAKTA-SESDPLENSEPQKLNGNGKNH 338
>YIS4_YEAST (P40564) Hypothetical 48.6 kDa protein in BET1-PAN1 intergenic| region Length = 432 Score = 32.7 bits (73), Expect = 0.60 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Frame = -3 Query: 508 QDGMKKV----EEGANKEEQLMKSFEEKKEAMLNSLWKINVVDIESTLSRVCQAVLKDST 341 +DG +++ EE A +E+ LM +L++ W + +I STL VC+ VL+D + Sbjct: 330 KDGNEQIKPTTEELAQQEQLLMGK-------VLSAAWHGSKYEITSTLRGVCKKVLEDDS 382 Query: 340 VSK 332 VSK Sbjct: 383 VSK 385
>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678| Length = 525 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Frame = +2 Query: 83 GKHTYRCVESKPAVPQYYKQTI---IHRDPNNSQIVKCQSSVRRCRSLPFHRRFH 238 G+ Y+C E A Q+ T IH Q +C + RC L H+R H Sbjct: 289 GEKPYKCEECGKAFTQFASLTRHKRIHTGEKPYQCEECGKTFNRCSHLSSHKRIH 343
>SH3G2_MOUSE (Q62420) SH3-containing GRB2-like protein 2 (EC 2.3.1.-) (SH3| domain protein 2A) (Endophilin 1) (SH3p4) Length = 352 Score = 30.4 bits (67), Expect = 3.0 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = -3 Query: 511 LQDGMKKVEEGANKEEQL---MKSFEEKKEAMLNSLWKINVVDIE--STLSRVCQAVLK 350 L G KK +G +E+L ++ F+E KE +S++ + +DIE S LS + QA L+ Sbjct: 166 LDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLE 224
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 44 CFVFSTTLFYRKHGKHTYRCVESKPAVPQYYKQTIIHRDPNN 169 CF F+T+L HGKH ++ A+ +KQ + DPNN Sbjct: 12 CF-FTTSLVMGIHGKHLINDDFNETALLLAFKQNSVKSDPNN 52
>ZN492_HUMAN (Q9P255) Zinc finger protein 492 (Fragment)| Length = 574 Score = 29.6 bits (65), Expect = 5.0 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%) Frame = +2 Query: 41 RCFVFSTTLFYRK---HGKHTYRCVESKPAVPQYYKQTI---IHRDPNNSQIVKCQSSVR 202 + F S+TL K G+ Y+C E A Q T IH + +C + + Sbjct: 331 KAFSQSSTLTTHKIIHTGEKFYKCEECGKAFSQLSHLTTHKRIHSGEKPYKCEECGKAFK 390 Query: 203 RCRSLPFHRRFHA*AVLAMVERFCALEYRSKFFQCFS 313 + +L H+R HA E+F E SK F FS Sbjct: 391 QSSTLTTHKRIHA------GEKFYKCEVCSKAFSRFS 421
>HRPA_PSESY (Q52420) Hrp pili protein hrpA (TTSS pilin hrpA)| Length = 108 Score = 29.6 bits (65), Expect = 5.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 505 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 413 DG E G +E ++ FE+KKEA+ N + Sbjct: 66 DGTANEENGLLRESSMLAGFEDKKEALSNQI 96
>ZN578_HUMAN (Q96N58) Zinc finger protein 578| Length = 365 Score = 29.6 bits (65), Expect = 5.0 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Frame = +2 Query: 41 RCFVFSTTL--FYRKH-GKHTYRCVESKPAVPQ---YYKQTIIHRDPNNSQIVKCQSSVR 202 + F+ ++L +R H G+ +Y+C E Q + IIH + +C + Sbjct: 209 KAFIHQSSLARHHRLHTGEKSYKCEECDRVFSQKSNLERHKIIHTGEKPYKCNECHKTFS 268 Query: 203 RCRSLPFHRRFHA 241 SLP HRR H+ Sbjct: 269 HRSSLPCHRRLHS 281
>ZN694_HUMAN (Q63HK3) Zinc finger protein 694| Length = 967 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Frame = +2 Query: 41 RCFVFSTTLFYRKH---GKHTYRCVESKPAVPQ---YYKQTIIHRDPNNSQIVKCQSSVR 202 +CF S++L + G+ Y+C E + + +H N + V C+ S Sbjct: 838 KCFSQSSSLIIHQRTHTGEKPYQCGECGKSFTNSSHFSAHRRVHTGENPYKCVDCEKSFN 897 Query: 203 RCRSLPFHRRFH 238 C HRR H Sbjct: 898 NCTRFREHRRIH 909
>HRPA_PSESH (Q9F0B1) Hrp pili protein hrpA (TTSS pilin hrpA)| Length = 108 Score = 29.3 bits (64), Expect = 6.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 505 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 413 DG E G +E ++ FE+KKEA+ N + Sbjct: 66 DGTANEENGLLRETSMLAGFEDKKEALSNQI 96
>HRPA_PSESG (Q52480) Hrp pili protein hrpA (TTSS pilin hrpA)| Length = 108 Score = 29.3 bits (64), Expect = 6.6 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 505 DGMKKVEEGANKEEQLMKSFEEKKEAMLNSL 413 DG E G +E ++ FE+KKEA+ N + Sbjct: 66 DGTANEENGLLRETSMLAGFEDKKEALSNQI 96
>NFAT5_HUMAN (O94916) Nuclear factor of activated T-cells 5 (T-cell| transcription factor NFAT5) (NF-AT5) (Tonicity-responsive enhancer-binding protein) (TonE-binding protein) (TonEBP) Length = 1531 Score = 28.9 bits (63), Expect = 8.6 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = -3 Query: 451 SFEEKKEAMLNS---LWKINVVDIESTLSRVCQAVLKDSTVSKDVXXXXXXXXXXXGTIF 281 SFEE +AM + L K+N++ + +++K S+DV TIF Sbjct: 567 SFEEAMKAMKTTGCNLDKVNIIPNALMTPLIPSSMIK----SEDVTPMEVTAEKRSSTIF 622 Query: 280 QGAKSLYHRENSLRVESPMEGEGTTSS 200 + KS+ + +L S + G G+ SS Sbjct: 623 KTTKSVGSTQQTLENISNIAGNGSFSS 649 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,656,004 Number of Sequences: 219361 Number of extensions: 1446730 Number of successful extensions: 4239 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4238 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
