ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2912_DESPS (Q6AJ39) UPF0316 protein DP2912 30 3.8
2HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog) 30 5.0
3KKCC2_MOUSE (Q8C078) Calcium/calmodulin-dependent protein kinase... 29 6.5
4KKCC2_HUMAN (Q96RR4) Calcium/calmodulin-dependent protein kinase... 29 6.5
5CLD13_MOUSE (Q9Z0S4) Claudin-13 29 6.5
6KKCC2_RAT (O88831) Calcium/calmodulin-dependent protein kinase k... 29 6.5
7AT10A_MOUSE (O54827) Probable phospholipid-transporting ATPase V... 29 6.5
8US30_HCMVA (P09706) Hypothetical protein HHRF5 29 8.5
9EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2... 29 8.5
10FA5_PIG (Q9GLP1) Coagulation factor V precursor (Activated prote... 29 8.5

>Y2912_DESPS (Q6AJ39) UPF0316 protein DP2912|
          Length = 318

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 340 FEYRSVSLVSGMFMSRQIPMSVETRRMIPVIHARLSLTRYIAAIEA 477
           FE  S+   + +F+SR + +S  T R I ++H R ++  ++   EA
Sbjct: 37  FEPASLLYAAMVFLSRVVDVSFGTLRTISIVHGRTTMAFWLGFFEA 82



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>HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)|
          Length = 1323

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 2   ISKWRIYSDTGFLLQQYSTIFDDINKITL 88
           + KWRI   T F+  +Y  I DD N I L
Sbjct: 554 VKKWRIGKTTIFITHEYKNILDDENVIIL 582



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>KKCC2_MOUSE (Q8C078) Calcium/calmodulin-dependent protein kinase kinase 2 (EC|
           2.7.11.17) (Calcium/calmodulin-dependent protein kinase
           kinase beta) (CaM-kinase kinase beta) (CaM-KK beta)
           (CaMKK beta)
          Length = 588

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 HTGSVSIQFSMNDPHSNNMFMLHR-VNSKPRLSVPTVKP 245
           H   V +   ++DP+ ++++M+   VN  P + VPT+KP
Sbjct: 245 HPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP 283



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>KKCC2_HUMAN (Q96RR4) Calcium/calmodulin-dependent protein kinase kinase 2 (EC|
           2.7.11.17) (Calcium/calmodulin-dependent protein kinase
           kinase beta) (CaM-kinase kinase beta) (CaM-KK beta)
           (CaMKK beta)
          Length = 588

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 HTGSVSIQFSMNDPHSNNMFMLHR-VNSKPRLSVPTVKP 245
           H   V +   ++DP+ ++++M+   VN  P + VPT+KP
Sbjct: 245 HPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP 283



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>CLD13_MOUSE (Q9Z0S4) Claudin-13|
          Length = 211

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 446 LSLAWITGIILLVSTLIGICLLMNMPLTRD 357
           LSLAW + ++LL+    GI L +N+P+ RD
Sbjct: 163 LSLAWTSSLLLLLG---GILLCVNIPVCRD 189



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>KKCC2_RAT (O88831) Calcium/calmodulin-dependent protein kinase kinase 2 (EC|
           2.7.11.17) (Calcium/calmodulin-dependent protein kinase
           kinase beta) (CaM-kinase kinase beta) (CaM-KK beta)
           (CaMKK beta)
          Length = 587

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 132 HTGSVSIQFSMNDPHSNNMFMLHR-VNSKPRLSVPTVKP 245
           H   V +   ++DP+ ++++M+   VN  P + VPT+KP
Sbjct: 244 HPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKP 282



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>AT10A_MOUSE (O54827) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)|
           (P-locus fat-associated ATPase)
          Length = 1508

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 94  DYFYLFTEKQEKPIQAVSVYSSQ*MIHIATICLCYTG*TASPDSASLLLNPRVQRKNPSM 273
           D F      QE P+  +S   S        + +C T    SPD     +  R + K+P  
Sbjct: 549 DRFLAIARHQEHPLAHLSPELSDVFDFFIALTICNTVVVTSPDQPRQKVRVRFELKSPVK 608

Query: 274 TVKNF 288
           T+++F
Sbjct: 609 TIEDF 613



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>US30_HCMVA (P09706) Hypothetical protein HHRF5|
          Length = 349

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
 Frame = -2

Query: 497 ASRTNATASIAAIYLV----RLSLAWITGIILLVSTLIGI 390
           A+RT++T S+ + ++V     L++ W TGI+LL    +G+
Sbjct: 209 ATRTSSTYSVLSAFVVWIGSGLNIIWWTGIVLLAVDALGL 248



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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 422 IILLVSTLIGICLLMNMPLTRDTLLYSNVKI 330
           ++ L+S L+ +CL   +PL++    Y N K+
Sbjct: 6   VVSLISLLVSVCLAQPLPLSKRYFEYENYKV 36



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>FA5_PIG (Q9GLP1) Coagulation factor V precursor (Activated protein C|
           cofactor) [Contains: Coagulation factor V heavy chain;
           Coagulation factor V light chain]
          Length = 2258

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = +3

Query: 15  EFIQILAFCYNNTVQSSMILTKLHST*LFL------FIYGKAREAHTGSVSIQFSMNDPH 176
           E I  L FC+++TVQ      + H   L +      FIYGK  E       ++       
Sbjct: 594 ESIPTLGFCFDDTVQWHFCSVRTHDNILTIHFTGHSFIYGKRHEDTLTLFPMRGESVTVT 653

Query: 177 SNNM--FMLHRVNSKPR 221
            +N+  +ML  +NS PR
Sbjct: 654 MDNVGTWMLTTMNSNPR 670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,820,310
Number of Sequences: 219361
Number of extensions: 1390053
Number of successful extensions: 3265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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