>UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB fusion protein 4)|
          Length = 1483

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +3

Query: 354  AAKSGNWKRCSSFS----MDCRTSDDPVTXXXXPQPV 452
            A KS N  RC+S+S    MD  T+DD +T    P+P+
Sbjct: 1155 ARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEPL 1191

>YIIE_SHIFL (P0ADQ6) Hypothetical protein yiiE|
          Length = 70

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = -3

Query: 469 ERIDIVTGWGRRSRVTGSSLVRQSIEKLLHLFQFPLFAARG 347
           +R++ + GW + SR   S+++R+++E+ L   QFP+  A+G
Sbjct: 14  KRLNKLRGWRKVSR---SAILREAVEQYLERQQFPVRKAKG 51

>YIIE_ECOLI (P0ADQ5) Hypothetical protein yiiE|
          Length = 70

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = -3

Query: 469 ERIDIVTGWGRRSRVTGSSLVRQSIEKLLHLFQFPLFAARG 347
           +R++ + GW + SR   S+++R+++E+ L   QFP+  A+G
Sbjct: 14  KRLNKLRGWRKVSR---SAILREAVEQYLERQQFPVRKAKG 51

>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF complex|
           component SNF5) (Transcription factor TYE4)
          Length = 905

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 294 LCSHWLSGSPHPTKQPVLPRAAKS 365
           + +H ++ SP+PT QPV+P  A S
Sbjct: 843 IANHTVTNSPNPTLQPVIPGGAAS 866


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,935,824
Number of Sequences: 219361
Number of extensions: 714265
Number of successful extensions: 2086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2086
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)