ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart19g01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Plus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 27435096 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 27435155 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 27435156 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 27435215 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 27435216 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 27435275 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 27435276 ccagccagtgacaatgtc 27435293
>emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb0011N16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 55237 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Minus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 46722 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 46663 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 46662 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 46603 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 46602 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 46543 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 46542 ccagccagtgacaatgtc 46525
>dbj|AK104070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A07, full insert sequence Length = 1899 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Minus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 1682 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 1623 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 1622 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 1563 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 1562 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 1503 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 1502 ccagccagtgacaatgtc 1485
>dbj|AK073506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044K21, full insert sequence Length = 3154 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Minus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 2952 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 2893 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 2892 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 2833 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 2832 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 2773 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 2772 ccagccagtgacaatgtc 2755
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Plus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 27360696 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 27360755 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 27360756 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 27360815 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 27360816 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 27360875 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 27360876 ccagccagtgacaatgtc 27360893
>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109222 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Plus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 11010 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 11069 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 11070 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 11129 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 11130 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 11189 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 11190 ccagccagtgacaatgtc 11207
>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124605 Score = 83.8 bits (42), Expect = 5e-13 Identities = 159/198 (80%) Strand = Plus / Plus Query: 263 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 322 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 103416 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 103475 Query: 323 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 382 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 103476 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 103535 Query: 383 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 442 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 103536 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 103595 Query: 443 ccagccggtgacgatgtc 460 |||||| ||||| ||||| Sbjct: 103596 ccagccagtgacaatgtc 103613
>gb|AY112196.1| Zea mays CL12485_1 mRNA sequence Length = 746 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 426 accctgctcctcctcccccagccggtgacgatgtc 460 |||||||||||||| |||||||| ||||| ||||| Sbjct: 474 accctgctcctcctgccccagccagtgacaatgtc 508
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 gccggtgttgccgcgcgcggc 358 ||||||||||||||||||||| Sbjct: 1117240 gccggtgttgccgcgcgcggc 1117220
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 agagctagagcagatgcatgcgctc 283 ||||||||||||||| ||||||||| Sbjct: 66010 agagctagagcagattcatgcgctc 65986
>gb|AC078903.11| Homo sapiens chromosome 17, clone RP11-1084K4, complete sequence Length = 95359 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 ggtgaccctgctcctcctccc 442 ||||||||||||||||||||| Sbjct: 53897 ggtgaccctgctcctcctccc 53877
>emb|AL356021.4|CNS05TDB Human chromosome 14 DNA sequence BAC R-783L4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184656 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 cctgctcctcctcccccagcc 448 ||||||||||||||||||||| Sbjct: 88811 cctgctcctcctcccccagcc 88791
>gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, complete sequence Length = 196119 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 aatctctaaatgttctcatca 23 ||||||||||||||||||||| Sbjct: 40737 aatctctaaatgttctcatca 40717
>gb|AC169703.1| Rhesus Macaque BAC CH250-14E24 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 161972 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 gtgaccctgctcctcctccc 442 |||||||||||||||||||| Sbjct: 158476 gtgaccctgctcctcctccc 158495
>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence Length = 56458 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ggttgtgcagccactggctg 311 |||||||||||||||||||| Sbjct: 12756 ggttgtgcagccactggctg 12737
>gb|AC125051.4| Mus musculus BAC clone RP23-372M8 from chromosome 17, complete sequence Length = 126106 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atgttctcatcacagataag 31 |||||||||||||||||||| Sbjct: 28873 atgttctcatcacagataag 28854
>emb|AL662906.4| Human DNA sequence from clone RP11-111I12 on chromosome 1 Contains a novel gene, complete sequence Length = 134028 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ttcctagctgatgatgataa 216 |||||||||||||||||||| Sbjct: 41818 ttcctagctgatgatgataa 41799
>emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chromosome 6, complete sequence Length = 119389 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 105435 cctgctcctcctcccccagc 105454
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 cgaagcagccggtgttgccg 350 |||||||||||||||||||| Sbjct: 4382508 cgaagcagccggtgttgccg 4382489
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctctaaatgttctcatcaca 25 |||||||||||||||||||| Sbjct: 66963 ctctaaatgttctcatcaca 66982
>emb|AL023281.1|HS544A11 Human DNA sequence from clone CTA-544A11 on chromosome 22q12.1-12.3, complete sequence Length = 113143 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 caccacactacagacaaatt 67 |||||||||||||||||||| Sbjct: 35251 caccacactacagacaaatt 35270
>emb|AJ237815.1|PAD237815 Porcine adenovirus serotype 3 complete genome, strain IAF Length = 34094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcgatggactgccggacgag 412 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>gb|AC090816.3| Homo sapiens chromosome 8, clone CTC-386L14, complete sequence Length = 126761 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctctaaatgttctcatcaca 25 |||||||||||||||||||| Sbjct: 29729 ctctaaatgttctcatcaca 29748
>gb|AC068672.11| Homo sapiens chromosome 8, clone RP11-566H8, complete sequence Length = 199583 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ctctaaatgttctcatcaca 25 |||||||||||||||||||| Sbjct: 38978 ctctaaatgttctcatcaca 38959
>emb|CR611951.1| full-length cDNA clone CS0DC010YH14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 802 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 412 cctgctcctcctcccccagc 431
>emb|CR593925.1| full-length cDNA clone CS0DC014YE07 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 802 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 412 cctgctcctcctcccccagc 431
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ttattcctagctgatgatga 213 |||||||||||||||||||| Sbjct: 78919 ttattcctagctgatgatga 78938
>gb|AC009470.4| Homo sapiens BAC clone RP11-125K7 from 11, complete sequence Length = 162511 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 92320 cctgctcctcctcccccagc 92301
>ref|XM_678917.1| PREDICTED: Danio rerio similar to regulator of G-protein signalling 18 (LOC556179), mRNA Length = 933 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 cagcagcttctcgatggact 402 |||||||||||||||||||| Sbjct: 738 cagcagcttctcgatggact 719
>gb|DQ388430.1| Homo sapiens fibroblast growth factor (acidic) intracellular binding protein (FIBP) gene, complete cds Length = 8330 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 5768 cctgctcctcctcccccagc 5787
>ref|XM_691473.1| PREDICTED: Danio rerio similar to AT rich interactive domain 1A (Swi1 like) (LOC568161), mRNA Length = 7839 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 200 cctgctcctcctcccccagc 181
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctctaaatgttctcatcaca 25 |||||||||||||||||||| Sbjct: 66963 ctctaaatgttctcatcaca 66982
>gb|AF250392.1|AF250392 Homo sapiens aFGF intracellular binding protein (FIBP) gene, complete cds Length = 5107 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 4290 cctgctcctcctcccccagc 4309
>gb|AC078988.18| Homo sapiens X BAC RP11-169J21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169849 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctaaatgttctcatcacaga 27 |||||||||||||||||||| Sbjct: 4308 ctaaatgttctcatcacaga 4327
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gcgctcgacgtaggggttgt 297 |||||||||||||||||||| Sbjct: 76183 gcgctcgacgtaggggttgt 76164
>gb|AF247039.1|AF247039 Porcine adenovirus 3 171R (E1A), 202R (E1B-1), 474R (E1B-2), 288R (288R), 198R (pIX), 163R* (163R*), 162R (162R), 97R (97R) and 184R (184R) genes, complete cds; and IVa2 (IVa2) gene, partial cds Length = 4769 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcgatggactgccggacgag 412 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>emb|BX649472.15| Zebrafish DNA sequence from clone CH211-214K9 in linkage group 20, complete sequence Length = 108623 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 accataagaacaaaactgca 159 |||||||||||||||||||| Sbjct: 31176 accataagaacaaaactgca 31195
>gb|AF083132.1|AF083132 Porcine adenovirus 3 strain 6618, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcgatggactgccggacgag 412 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>gb|AC003106.1|AC003106 Homo sapiens Xp22 GS-524I1 (Genome Systems Human BAC library), complete sequence Length = 128888 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctaaatgttctcatcacaga 27 |||||||||||||||||||| Sbjct: 127152 ctaaatgttctcatcacaga 127133
>gb|AC131674.2| Mus musculus BAC clone RP23-322I3 from 17, complete sequence Length = 226594 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 atgttctcatcacagataag 31 |||||||||||||||||||| Sbjct: 215073 atgttctcatcacagataag 215054
>emb|Z75890.1|HSB42B1 Human DNA sequence from clone SC22CB-42B1 on chromosome 22, complete sequence Length = 40943 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 caccacactacagacaaatt 67 |||||||||||||||||||| Sbjct: 14186 caccacactacagacaaatt 14205
>dbj|AB026117.1| Porcine adenovirus 3 DNA, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 tcgatggactgccggacgag 412 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>dbj|AP001201.7| Homo sapiens genomic DNA, chromosome 11, clone:RP11-821O7, complete sequence Length = 182547 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 cctgctcctcctcccccagc 447 |||||||||||||||||||| Sbjct: 19880 cctgctcctcctcccccagc 19861 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,249,006 Number of Sequences: 3902068 Number of extensions: 4249006 Number of successful extensions: 100389 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100095 Number of HSP's gapped (non-prelim): 294 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
