ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4... 29 3.0
2AMY_BUTFI (P30269) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp... 28 5.1
3KLK13_HUMAN (Q9UKR3) Kallikrein-13 precursor (EC 3.4.21.-) (Kall... 28 6.7

>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 177  PPDPPWQGAPLQQFQFHQGPLVIHPHR 97
            PP PPW   PL + +   G    HPHR
Sbjct: 1209 PPPPPWAAGPLPRRRARCGCPRSHPHR 1235



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>AMY_BUTFI (P30269) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 976

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 17  SIGFSSKFYFLYFFNIKPWDTQHGCNKRWGWITRGPW 127
           ++G S  +   YF+N + WD    C   WG    G W
Sbjct: 813 ALGVSGSYTTAYFYNTEGWDKV--CAYTWGATALGDW 847



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>KLK13_HUMAN (Q9UKR3) Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like|
           protein 4) (KLK-L4)
          Length = 277

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 180 FPPDPPWQGAPLQQFQFHQGPLVIHPHRLLHPC-CVSQG 67
           FP   PWQ A L Q +   G +++HP  +L    C+ +G
Sbjct: 43  FPHSQPWQAALLVQGRLLCGGVLVHPKWVLTAAHCLKEG 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,290,238
Number of Sequences: 219361
Number of extensions: 519674
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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