Clone Name | rbart19e11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC ... | 30 | 3.1 | 2 | YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in ch... | 30 | 3.1 | 3 | ITB8_HUMAN (P26012) Integrin beta-8 precursor | 30 | 4.0 | 4 | RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like p... | 25 | 8.2 |
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>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)| (Extracellular matrix protein 17) Length = 1442 Score = 30.0 bits (66), Expect = 3.1 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = +1 Query: 349 LIKTPAKTELSCWLVGSTEEDDD*RWPSYLAVLDDG 456 L KT A E+ WL G E+DDD WPS DG Sbjct: 1013 LPKTTAYHEV--WLEGPEEQDDDPSWPSIFENRKDG 1046
>YADC_SCHPO (Q09837) Putative glycosyl transferase C4G8.12c in chromosome I (EC| 2.-.-.-) Length = 533 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 188 FRLCGCICRMQCQPSTNM*LHALYPFMKHDRIYVLLL 78 F LC CIC+ C P YP + R+Y+ L+ Sbjct: 75 FLLCRCICKSNCSP---------YPILLFTRLYMCLI 102
>ITB8_HUMAN (P26012) Integrin beta-8 precursor| Length = 769 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 118 YRACSYIFVEGWHCMRQMHPQSLKQSI 198 Y AC E W+CM+ +HP +L Q+I Sbjct: 631 YTACK----ENWNCMQCLHPHNLSQAI 653
>RFL1_ARATH (Q8L3R3) Disease resistance protein RFL1 (RPS5-like protein 1)| (pNd13/pNd14) Length = 885 Score = 25.0 bits (53), Expect(2) = 8.2 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -3 Query: 193 IVSDFADASAACNANPLRICNCMLC 119 I + F D + CNA R+C C C Sbjct: 82 IENQFNDLLSTCNAEIQRLCLCGFC 106 Score = 21.9 bits (45), Expect(2) = 8.2 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -1 Query: 402 RRTNQPARELCFGGSFNQSIN*FLWEIEEA 313 R NQ ++ LC GS+ Q+++ L +++A Sbjct: 13 REVNQFSQWLCVSGSYIQNLSENLASLQKA 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,761,400 Number of Sequences: 219361 Number of extensions: 1129807 Number of successful extensions: 2102 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2102 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)