Clone Name | rbart19d06 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcrip... | 49 | 1e-05 | 2 | REV_HV1BN (P12485) REV protein (Anti-repression transactivator p... | 32 | 0.73 | 3 | REV_HV1OY (P20887) REV protein (Anti-repression transactivator p... | 29 | 6.2 | 4 | REV_HV1A2 (P04623) REV protein (Anti-repression transactivator p... | 29 | 6.2 |
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>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor| RLTR1) Length = 257 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/64 (51%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Frame = -2 Query: 501 SETLSMPLDDLNDVCMEPHDAFGKPDG--DMDYWLRLFMEXXXXXXXXXXXXXXXXGALD 328 SETLSMPLD DV MEP DAF P DMDYWL +FME A D Sbjct: 209 SETLSMPLDGY-DVSMEPGDAFVAPPSADDMDYWLGVFME--------------SGEAQD 253 Query: 327 LPQI 316 LPQI Sbjct: 254 LPQI 257
>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)| (ART/TRS) (Fragment) Length = 106 Score = 32.3 bits (72), Expect = 0.73 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247 N+ +A +R I L+GW+L + GR+ L +PP++R Sbjct: 30 NRRRRWRARQRQIQSLSGWILSTFLGRSAEPVPLQLPPLER 70
>REV_HV1OY (P20887) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 29.3 bits (64), Expect = 6.2 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247 N+ + +R I ++GW+L + GR+ L +PP++R Sbjct: 40 NRRRRWRERQRQIRKISGWILSTYLGRSAEPVPLQLPPLER 80
>REV_HV1A2 (P04623) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 29.3 bits (64), Expect = 6.2 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 125 NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 247 N+ + +R I ++GW+L + GR+ L +PP++R Sbjct: 40 NRRRRWRERQRQIRSISGWILSTYLGRSAEPVPLQLPPLER 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,837,083 Number of Sequences: 219361 Number of extensions: 1029599 Number of successful extensions: 2463 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2453 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)