Clone Name | rbart19d02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_474328.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1677 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1641 ggtgggccccatctccttggcgatattccggagcacgtacttctggatcttcccggtgga 1582 Query: 293 c 293 | Sbjct: 1581 c 1581
>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05, complete sequence Length = 164943 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 97614 ggtgggccccatctccttggcgatattccggagcacgtacttctggatcttcccggtgga 97673 Query: 293 c 293 | Sbjct: 97674 c 97674
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 34480129 ggtgggccccatctccttggcgatattccggagcacgtacttctggatcttcccggtgga 34480188 Query: 293 c 293 | Sbjct: 34480189 c 34480189
>dbj|AK106615.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H10, full insert sequence Length = 1897 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 1735 ggtgggccccatctccttggcgatattccggagcacgtacttctggatcttcccggtgga 1676 Query: 293 c 293 | Sbjct: 1675 c 1675
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 101678 ggtgggccccatctccttggcgatattccggagcacgtacttctggatctttccggtgga 101737 Query: 293 c 293 | Sbjct: 101738 c 101738
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 65.9 bits (33), Expect = 7e-08 Identities = 55/61 (90%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 234 ggtgggcccc-tctccttggcgaggttccggagcacgtacttctgaatcttgcccgtgga 292 |||||||||| |||||||||||| |||||||||||||||||||| ||||| || ||||| Sbjct: 12011 ggtgggccccatctccttggcgatattccggagcacgtacttctggatctttccggtgga 12070 Query: 293 c 293 | Sbjct: 12071 c 12071
>ref|XM_466399.1| Oryza sativa (japonica cultivar-group), mRNA Length = 333 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 aatcttgcagctgcagctgcagcag 94 ||||||||||||||||| ||||||| Sbjct: 206 aatcttgcagctgcagcagcagcag 182
>ref|NM_001031369.1| Gallus gallus transducin (beta)-like 1X-linked receptor 1 (TBL1XR1), mRNA Length = 4751 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 510 ttgcagctgcagctgcagcag 490
>gb|AE009312.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 82 of 187 of the complete sequence Length = 11082 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 attgccatgctgctgcagatc 160 ||||||||||||||||||||| Sbjct: 746 attgccatgctgctgcagatc 766
>gb|AE008302.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 106 of 187 of the complete sequence Length = 11111 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 attgccatgctgctgcagatc 160 ||||||||||||||||||||| Sbjct: 10366 attgccatgctgctgcagatc 10346
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 acttctgaatcttgcccgtgg 291 ||||||||||||||||||||| Sbjct: 697869 acttctgaatcttgcccgtgg 697849
>ref|XM_775859.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in malignant brain tumors 1 isoform b precursor (LOC575458), mRNA Length = 5538 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cagatcaagccaggcaagacg 175 ||||||||||||||||||||| Sbjct: 868 cagatcaagccaggcaagacg 888
>emb|Y15165.1|ZMY15165 Zea mays mRNA for Em binding protein-1a Length = 1610 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 1111 ttgcagctgcagctgcagcag 1131
>emb|AJ719937.1| Gallus gallus mRNA for hypothetical protein, clone 8j10 Length = 4751 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 510 ttgcagctgcagctgcagcag 490
>ref|NM_057534.3| Drosophila melanogaster sister of odd and bowl CG3242-RA (sob), mRNA Length = 2611 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 642 ttgcagctgcagctgcagcag 622
>gb|AC092231.1|AC092231 Drosophila melanogaster, chromosome 2L, region 24D-24E, BAC clone BACR28B08, complete sequence Length = 155566 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 5389 ttgcagctgcagctgcagcag 5409
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcaga 95 ||||||||||||||||||||| Sbjct: 25402825 tgcagctgcagctgcagcaga 25402805 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 6982591 tgcagctgcagctgcagcag 6982572
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 aatcttgcagctgcagctgcagcag 94 ||||||||||||||||| ||||||| Sbjct: 22180925 aatcttgcagctgcagcagcagcag 22180901
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 5554862 ttgcagctgcagctgcagcag 5554882 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcagctgcagctgcagcaga 95 |||||||||||||||||||| Sbjct: 35467045 gcagctgcagctgcagcaga 35467064
>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone BACR03G07, complete sequence Length = 170064 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 125395 ttgcagctgcagctgcagcag 125415
>gb|BT003205.1| Drosophila melanogaster RE22261 full insert cDNA Length = 2624 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 642 ttgcagctgcagctgcagcag 622
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 151702 ttgcagctgcagctgcagcag 151722
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 20335 ttgcagctgcagctgcagcag 20355
>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19 Length = 164483 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcaga 95 ||||||||||||||||||||| Sbjct: 76834 tgcagctgcagctgcagcaga 76814
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 aatcttgcagctgcagctgcagcag 94 ||||||||||||||||| ||||||| Sbjct: 76769 aatcttgcagctgcagcagcagcag 76745
>dbj|AK107643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F04, full insert sequence Length = 2051 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcaga 95 ||||||||||||||||||||| Sbjct: 880 tgcagctgcagctgcagcaga 860
>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete sequence Length = 304674 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 148612 ttgcagctgcagctgcagcag 148632
>gb|U62004.1|DMU62004 Drosophila melanogaster Sob protein (sob) mRNA, complete cds Length = 2235 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ttgcagctgcagctgcagcag 94 ||||||||||||||||||||| Sbjct: 268 ttgcagctgcagctgcagcag 248
>ref|XM_463213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcagctgcagctgcagcaga 95 |||||||||||||||||||| Sbjct: 123 gcagctgcagctgcagcaga 142
>ref|NM_190427.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 639 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gcagctgcagctgcagcaga 95 |||||||||||||||||||| Sbjct: 548 gcagctgcagctgcagcaga 529
>ref|XM_470263.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 431 tgcagctgcagctgcagcag 412
>ref|XM_525981.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC470600), mRNA Length = 3585 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3300 tgcagctgcagctgcagcag 3281
>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence Length = 145575 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 43411 tgcagctgcagctgcagcag 43430
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 134621 tgcagctgcagctgcagcag 134602
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 30583 tgcagctgcagctgcagcag 30564
>ref|XM_605871.2| PREDICTED: Bos taurus similar to ATP/GTP binding protein-like 3 (LOC527479), mRNA Length = 2280 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 aagggacaagggagctctca 23 |||||||||||||||||||| Sbjct: 1839 aagggacaagggagctctca 1820
>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10, complete sequence Length = 127304 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 41454 cttgcagctgcagctgcagc 41473
>ref|NM_000501.1| Homo sapiens elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) (ELN), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 906 tgcagctgcagctgcagcag 925
>ref|NM_194250.1| Homo sapiens chromosome 2 open reading frame 10 (C2orf10), mRNA Length = 4700 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3939 tgcagctgcagctgcagcag 3920
>gb|AC148455.2| Xenopus tropicalis clone CH216-165I8, complete sequence Length = 170350 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 agctctcatttcttcacata 35 |||||||||||||||||||| Sbjct: 77558 agctctcatttcttcacata 77577
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 32150611 cttgcagctgcagctgcagc 32150630 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcttgctgaatgctgatctc 118 |||||||||||||||||||| Sbjct: 3469022 gcttgctgaatgctgatctc 3469041 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3138943 tgcagctgcagctgcagcag 3138924
>ref|XM_860154.1| PREDICTED: Canis familiaris hypothetical protein LOC609782 (LOC609782), mRNA Length = 810 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctgcggggtgggcccctctc 247 |||||||||||||||||||| Sbjct: 264 ctgcggggtgggcccctctc 245
>gb|BC065566.1| Homo sapiens elastin (supravalvular aortic stenosis, Williams-Beuren syndrome), mRNA (cDNA clone MGC:70763 IMAGE:6153564), complete cds Length = 3228 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 894 tgcagctgcagctgcagcag 913
>gb|AC005056.2| Homo sapiens BAC clone CTB-51J22 from 7, complete sequence Length = 98188 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 42202 tgcagctgcagctgcagcag 42183
>gb|AC127317.3| Mus musculus BAC clone RP23-227H18 from chromosome 7, complete sequence Length = 180376 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 145604 tgcagctgcagctgcagcag 145623
>ref|XM_753314.1| Ustilago maydis 521 hypothetical protein (UM02260.1) partial mRNA Length = 5790 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 2748 tgcagctgcagctgcagcag 2767
>gb|AC127587.4| Mus musculus BAC clone RP24-143O1 from chromosome 7, complete sequence Length = 139419 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 7265 tgcagctgcagctgcagcag 7284
>gb|AC091092.3| Papio anubis clone RP41-191D8, complete sequence Length = 167732 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 21270 tgcagctgcagctgcagcag 21289
>gb|BC022169.1| Mus musculus cDNA clone IMAGE:3673685, **** WARNING: chimeric clone **** Length = 3248 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1587 tgcagctgcagctgcagcag 1568
>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 137783 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gagctctcatttcttcacat 34 |||||||||||||||||||| Sbjct: 27439 gagctctcatttcttcacat 27420
>emb|AL391134.13| Human DNA sequence from clone RP11-245M24 on chromosome Xp11.22-11.3 Contains the 3' end of a nove gene and a keratin 8 (K8, KO, CK8, CYK8, K2C8, CARD2) (KRT8) pseudogene, complete sequence Length = 58094 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 173 acgacacaaccctgaatttccaca 196 |||||||||||||||| ||||||| Sbjct: 34853 acgacacaaccctgaaattccaca 34830
>gb|AY327407.1| Homo sapiens hypothetical protein mRNA, complete cds Length = 4700 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3939 tgcagctgcagctgcagcag 3920
>emb|CR536620.6| Zebrafish DNA sequence from clone CH211-235C15 in linkage group 16, complete sequence Length = 57729 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 atttccacagcaattatact 207 |||||||||||||||||||| Sbjct: 23408 atttccacagcaattatact 23427
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 61956 tgcagctgcagctgcagcag 61937
>gb|AY224604.1| Drosophila simulans metchnikowin gene, complete cds Length = 1735 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 599 tgcagctgcagctgcagcag 580
>emb|CR859570.1| Pongo pygmaeus mRNA; cDNA DKFZp459D134 (from clone DKFZp459D134) Length = 4022 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3253 tgcagctgcagctgcagcag 3234
>gb|U12592.1|DVNEURS2 Drosophila virilis neuralized protein (neu) gene, exon 2 Length = 2207 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1448 tgcagctgcagctgcagcag 1429
>gb|AC163652.3| Mus musculus BAC clone RP24-315D17 from chromosome 17, complete sequence Length = 171992 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 102268 tgcagctgcagctgcagcag 102287
>dbj|AK127762.1| Homo sapiens cDNA FLJ45863 fis, clone OCBBF3001076 Length = 3860 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3116 tgcagctgcagctgcagcag 3097
>dbj|AK125511.1| Homo sapiens cDNA FLJ43523 fis, clone PLACE5000282, weakly similar to Homo sapiens elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) (ELN) Length = 3137 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 950 tgcagctgcagctgcagcag 969
>dbj|AK122731.1| Homo sapiens cDNA FLJ16246 fis, clone HCHON2001577, highly similar to Human elastin gene Length = 2704 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 568 tgcagctgcagctgcagcag 587
>dbj|AK095990.1| Homo sapiens cDNA FLJ38671 fis, clone HSYRA2000332, highly similar to Human elastin gene Length = 3302 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 940 tgcagctgcagctgcagcag 959
>dbj|AK094138.1| Homo sapiens cDNA FLJ36819 fis, clone ASTRO2005575, highly similar to Human elastin gene Length = 2984 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 828 tgcagctgcagctgcagcag 847
>dbj|AK092232.1| Homo sapiens cDNA FLJ34913 fis, clone NT2RP7000311, moderately similar to ELASTIN PRECURSOR Length = 2845 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 788 tgcagctgcagctgcagcag 807
>dbj|AK075554.1| Homo sapiens cDNA PSEC0254 fis, clone NT2RP3003474, moderately similar to ELASTIN PRECURSOR Length = 2992 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 880 tgcagctgcagctgcagcag 899
>dbj|AK055275.1| Homo sapiens cDNA FLJ30713 fis, clone FCBBF2001480 Length = 2416 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1672 tgcagctgcagctgcagcag 1653
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gcttgctgaatgctgatctc 118 |||||||||||||||||||| Sbjct: 41353 gcttgctgaatgctgatctc 41334
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 151736 cttgcagctgcagctgcagc 151755
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caggcttgctgaatgctgat 115 |||||||||||||||||||| Sbjct: 116040 caggcttgctgaatgctgat 116059
>gb|M16983.1|HUMEL01 Human elastin gene, exon 19 Length = 958 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 915 tgcagctgcagctgcagcag 934
>dbj|AK147323.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1013B10 product:similar to Calmodulin binding protein kinase [Fugu rubripes], full insert sequence Length = 3011 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1209 tgcagctgcagctgcagcag 1190
>gb|U93037.1|HSELAST4 Homo sapiens elastin gene, exons 5-27 and alternatively spliced products, partial cds Length = 19686 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 9791 tgcagctgcagctgcagcag 9810
>dbj|AK085143.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430043A01 product:similar to Calmodulin binding protein kinase [Fugu rubripes], full insert sequence Length = 3692 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1228 tgcagctgcagctgcagcag 1209
>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete sequence Length = 129778 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 2285 cttgcagctgcagctgcagc 2304
>gb|BC050379.1| Homo sapiens mRNA similar to elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) (cDNA clone IMAGE:5768028) Length = 2700 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 923 tgcagctgcagctgcagcag 942
>ref|XM_395452.2| PREDICTED: Apis mellifera similar to ENSANGP00000005615 (LOC411986), mRNA Length = 6150 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 597 tgcagctgcagctgcagcag 578
>ref|XM_396559.2| PREDICTED: Apis mellifera similar to CG3542-PA, isoform A (LOC413108), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 606 tgcagctgcagctgcagcag 625
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caggcttgctgaatgctgat 115 |||||||||||||||||||| Sbjct: 11532047 caggcttgctgaatgctgat 11532066
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 18645535 tgcagctgcagctgcagcag 18645554
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 28513761 cttgcagctgcagctgcagc 28513780 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 25618214 tgcagctgcagctgcagcag 25618195
>ref|XM_394553.2| PREDICTED: Apis mellifera similar to GA18626-PA (LOC411079), mRNA Length = 4422 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttgcagctgcagctgcagca 93 |||||||||||||||||||| Sbjct: 2722 ttgcagctgcagctgcagca 2741
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 cttgcagctgcagctgcagc 92 |||||||||||||||||||| Sbjct: 32241123 cttgcagctgcagctgcagc 32241142 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 gcttgctgaatgctgatctc 118 |||||||||||||||||||| Sbjct: 3469133 gcttgctgaatgctgatctc 3469152 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3139054 tgcagctgcagctgcagcag 3139035
>gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, complete sequence Length = 159512 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 74784 tgcagctgcagctgcagcag 74803
>gb|BC035570.1| Homo sapiens, clone IMAGE:5241630, mRNA Length = 3200 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 910 tgcagctgcagctgcagcag 929
>ref|XM_242905.3| PREDICTED: Rattus norvegicus hypothetical LOC313311 (LOC313311), mRNA Length = 531 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 39 tgcagctgcagctgcagcag 58
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gcagctgcagctgcagcaga 95 |||||||||||||||||||| Sbjct: 90994 gcagctgcagctgcagcaga 91013
>gb|BC086762.1| Mus musculus CaM kinase-like vesicle-associated, mRNA (cDNA clone IMAGE:5685651), with apparent retained intron Length = 3263 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1419 tgcagctgcagctgcagcag 1400
>gb|BC017634.1| Mus musculus CaM kinase-like vesicle-associated, mRNA (cDNA clone MGC:28873 IMAGE:4527857), complete cds Length = 3141 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1221 tgcagctgcagctgcagcag 1202
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0080E19 Length = 152755 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 3378 tgcagctgcagctgcagcag 3359
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 42018 tgcagctgcagctgcagcag 41999
>dbj|AK120902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030N23, full insert sequence Length = 1921 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 349 tgcagctgcagctgcagcag 368
>dbj|AK130894.1| Homo sapiens cDNA FLJ27384 fis, clone UBA08610, highly similar to Elastin precursor (Tropoelastin) Length = 2046 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 481 tgcagctgcagctgcagcag 500
>emb|BX538199.1|HSM806426 Homo sapiens mRNA; cDNA DKFZp686O21208 (from clone DKFZp686O21208); complete cds Length = 3065 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 907 tgcagctgcagctgcagcag 926
>emb|BX537939.1|HSM806064 Homo sapiens mRNA; cDNA DKFZp686F06102 (from clone DKFZp686F06102); complete cds Length = 3402 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 940 tgcagctgcagctgcagcag 959
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gttccggagcacgtacttct 276 |||||||||||||||||||| Sbjct: 1363255 gttccggagcacgtacttct 1363236
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 caggcttgctgaatgctgat 115 |||||||||||||||||||| Sbjct: 11538487 caggcttgctgaatgctgat 11538506
>gb|AF052145.1|AF052145 Homo sapiens clone 24400 mRNA sequence Length = 1434 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 671 tgcagctgcagctgcagcag 652
>ref|NM_145621.1| Mus musculus CaM kinase-like vesicle-associated (Camkv), mRNA Length = 3141 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1221 tgcagctgcagctgcagcag 1202
>gb|BC111033.1| Mus musculus CaM kinase-like vesicle-associated, mRNA (cDNA clone MGC:118008 IMAGE:5368225), complete cds Length = 3049 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 1216 tgcagctgcagctgcagcag 1197
>dbj|AB208942.1| Homo sapiens mRNA for Elastin precursor variant protein Length = 3147 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 901 tgcagctgcagctgcagcag 920
>emb|AL731808.26| Mouse DNA sequence from clone RP23-286E6 on chromosome 9, complete sequence Length = 124372 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 51438 tgcagctgcagctgcagcag 51419
>gb|M24782.1|HUMELASTIN Homo sapiens elastin (ELN) mRNA, 3' end Length = 1686 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 417 tgcagctgcagctgcagcag 436
>gb|M36860.1|HUMELASF Human elastin mRNA, complete cds Length = 2242 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 955 tgcagctgcagctgcagcag 974
>emb|X52896.1|HSELASRNA H.sapiens RNA for dermal fibroblast elastin Length = 2241 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgcagctgcagctgcagcag 94 |||||||||||||||||||| Sbjct: 954 tgcagctgcagctgcagcag 973 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,791,674 Number of Sequences: 3902068 Number of extensions: 2791674 Number of successful extensions: 70566 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69634 Number of HSP's gapped (non-prelim): 929 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)