ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 178 8e-42
2gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 163 5e-37
3gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 155 1e-34
4gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156... 145 1e-31
5gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 84 4e-13
6gb|DQ175951.1| Hordeum vulgare subsp. vulgare clone 33-61A-LB fl... 70 5e-09
7gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, comple... 44 0.31
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
9dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
10dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
11gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, comp... 42 1.2
12ref|XM_804983.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.2
13ref|XM_806777.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.2
14gb|BC058648.1| Mus musculus cDNA clone IMAGE:6406119, **** WARNI... 42 1.2
15gb|BC059228.1| Mus musculus lines homolog 2 (Drosophila), mRNA (... 42 1.2
16gb|AY318753.1| Bos taurus hepatocyte nuclear factor 4gamma mRNA,... 40 4.9
17gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
18gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
19ref|NM_205811.1| Bos taurus hepatocyte nuclear factor 4gamma (HN... 40 4.9
20dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
21gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) ch... 40 4.9
22gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, comple... 40 4.9
23gb|AC009428.4|AC009428 Homo sapiens chromosome , clone RP11-45M1... 40 4.9
24dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
25gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
26emb|AL935142.8| Zebrafish DNA sequence from clone CH211-227M23, ... 40 4.9
27emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chr... 40 4.9 
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score =  178 bits (90), Expect = 8e-42
 Identities = 147/167 (88%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caagttaatgagcatttattatcctccaaaccctacaatccaaaactcgtctgggttaaa 60
             |||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||
Sbjct: 94245 caagttaatgagcatttattatcctccaaaccctccaatccagaactcgcctgtgttaaa 94186

                                                                         
Query: 61    aggagaggagttaaatgaggagagagaggactaatccatattttagtagggacacccctg 120
              |||||||||||||||||| |||||||||||||||||| ||||||||||||  |||||||
Sbjct: 94185 -ggagaggagttaaatgagtagagagaggactaatccacattttagtaggggtacccctg 94127

                                                            
Query: 121   actaaannnnnnnagtctcaaaactagttttggtccctatttagtca 167
             ||||||       |||||||| ||||||||| | |||| ||||||||
Sbjct: 94126 actaaaaaaaattagtctcaagactagttttagcccctctttagtca 94080



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 160   tttagtcaaactaaaataagtcccttggatcca 192
             |||||||| ||||||||||||||||||||||||
Sbjct: 94042 tttagtcagactaaaataagtcccttggatcca 94010
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>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative
             chromosome condensation factor (CCF), putative resistance
             protein (RGA-2), putative resistance protein (RGA2) and
             putative nodulin-like-like protein (NLL) gene, complete
             cds; and retrotransposons Josephine, Angela-2, Angela-4,
             Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6,
             Angela-5, Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score =  163 bits (82), Expect = 5e-37
 Identities = 145/167 (86%), Gaps = 1/167 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1     caagttaatgagcatttattatcctccaaaccctacaatccaaaactcgtctgggttaaa 60
             |||||||||||||||||||||||||||||||||| |||| || |||||| ||| ||||||
Sbjct: 54558 caagttaatgagcatttattatcctccaaaccctccaatacagaactcgcctgtgttaaa 54499

                                                                         
Query: 61    aggagaggagttaaatgaggagagagaggactaatccatattttagtagggacacccctg 120
              |||||||||||||||||| ||||||||||||| |||| ||||||||||||  |||||||
Sbjct: 54498 -ggagaggagttaaatgagtagagagaggactagtccacattttagtaggggtacccctg 54440

                                                            
Query: 121   actaaannnnnnnagtctcaaaactagttttggtccctatttagtca 167
             ||||||       |||||||| ||||||||| | |||| ||||||||
Sbjct: 54439 actaaaaaaatttagtctcaagactagttttagcccctctttagtca 54393



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 160   tttagtcaaactaaaataagtcccttggatcca 192
             |||||||| ||||||||||||||||||||||||
Sbjct: 54355 tttagtcagactaaaataagtcccttggatcca 54323
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  155 bits (78), Expect = 1e-34
 Identities = 144/167 (86%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1      caagttaatgagcatttattatcctccaaaccctacaatccaaaactcgtctgggttaaa 60
              ||||||||||| |||||||||||||| ||| ||| ||||||| |||||||||| ||||||
Sbjct: 223042 caagttaatgaacatttattatcctcaaaatcctccaatccagaactcgtctgtgttaaa 223101

                                                                          
Query: 61     aggagaggagttaaatgaggagagagaggactaatccatattttagtagggacacccctg 120
               | |||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||
Sbjct: 223102 -gaagaggaattaaatgaggagagagaggactaatccacattttagtaggggtacccctg 223160

                                                             
Query: 121    actaaannnnnnnagtctcaaaactagttttggtccctatttagtca 167
              ||||||       |||||||| ||||||||| | |||| ||||||||
Sbjct: 223161 actaaaaaaatatagtctcaagactagttttagcccctctttagtca 223207
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>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence
          Length = 187012

 Score =  145 bits (73), Expect = 1e-31
 Identities = 142/166 (85%), Gaps = 1/166 (0%)
 Strand = Plus / Minus

                                                                         
Query: 2     aagttaatgagcatttattatcctccaaaccctacaatccaaaactcgtctgggttaaaa 61
             ||||||||||||||||||||||||||||||||| ||||||| |||||| ||  ||| |||
Sbjct: 74706 aagttaatgagcatttattatcctccaaaccctccaatccagaactcgcctatgtt-aaa 74648

                                                                         
Query: 62    ggagaggagttaaatgaggagagagaggactaatccatattttagtagggacacccctga 121
             |||||||| ||||||||| ||||||||||||| |||| ||||||||||||  | ||||||
Sbjct: 74647 ggagaggaattaaatgagtagagagaggactagtccacattttagtaggggtagccctga 74588

                                                           
Query: 122   ctaaannnnnnnagtctcaaaactagttttggtccctatttagtca 167
             |||||       |||||||| ||||||||| | |||| ||||||||
Sbjct: 74587 ctaaaaaaatttagtctcaagactagttttagcccctctttagtca 74542



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 160   tttagtcaaactaaaataagtcccttggatcca 192
             |||||||| ||||||||||||||||||||||||
Sbjct: 74504 tttagtcagactaaaataagtcccttggatcca 74472
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                         
Query: 65    gaggagttaaatgaggagagagaggactaatccatattttagtagggacacccctgacta 124
             ||||||||||||||| ||||||||||||||| || ||||||||||||  |||||||||||
Sbjct: 42898 gaggagttaaatgagaagagagaggactaatgcacattttagtaggggtacccctgacta 42839

               
Query: 125   aa 126
             ||
Sbjct: 42838 aa 42837



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 5     ttaatgagcatttattatcctccaaaccctacaatccaaaactcgtctg 53
             ||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct: 42946 ttaatgagcatttattatcctgcaaaccctccaatccagaactcgtctg 42898
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>gb|DQ175951.1| Hordeum vulgare subsp. vulgare clone 33-61A-LB flanking T-DNA
           insertion sequence
          Length = 338

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 1   caagttaatgagcatttattatcctccaaaccctacaatccaaaact 47
           ||||||||||||||||||||||| |||||||||| ||||||| ||||
Sbjct: 232 caagttaatgagcatttattatcatccaaaccctccaatccacaact 186



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 55/63 (87%), Gaps = 1/63 (1%)
 Strand = Plus / Minus

                                                                       
Query: 65  gaggagttaaatgaggagagag-aggactaatccatattttagtagggacacccctgact 123
           ||||||||||||||||| |||| |||| |||| || |||||| ||| || ||||||||||
Sbjct: 180 gaggagttaaatgaggatagagaaggattaatgcacattttaatagagatacccctgact 121

              
Query: 124 aaa 126
           |||
Sbjct: 120 aaa 118
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>gb|AC013714.8| Homo sapiens chromosome , clone RP11-22P4, complete sequence
          Length = 140009

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 62    ggagaggagttaaatgaggagagaga 87
             ||||||||||||||||||| ||||||
Sbjct: 39787 ggagaggagttaaatgaggcgagaga 39812
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 66       aggagttaaatgaggagagaga 87
                ||||||||||||||||||||||
Sbjct: 13972584 aggagttaaatgaggagagaga 13972563



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 68       gagttaaatgaggagagaga 87
                ||||||||||||||||||||
Sbjct: 21500546 gagttaaatgaggagagaga 21500527
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>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1051E10
          Length = 207782

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 66     aggagttaaatgaggagagaga 87
              ||||||||||||||||||||||
Sbjct: 132886 aggagttaaatgaggagagaga 132865
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>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0463A02
          Length = 151041

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 66    aggagttaaatgaggagagaga 87
             ||||||||||||||||||||||
Sbjct: 48329 aggagttaaatgaggagagaga 48308
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>gb|AC120791.13| Mus musculus chromosome 7, clone RP23-56I4, complete sequence
          Length = 246249

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   aaatgtctctgctcctgccca 297
             |||||||||||||||||||||
Sbjct: 85945 aaatgtctctgctcctgccca 85925
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>ref|XM_804983.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053503847.30) partial mRNA
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 269  tccgttaaaaatgtctctgct 289
            |||||||||||||||||||||
Sbjct: 1358 tccgttaaaaatgtctctgct 1338
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>ref|XM_806777.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504103.40) partial mRNA
          Length = 1371

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 269  tccgttaaaaatgtctctgct 289
            |||||||||||||||||||||
Sbjct: 1358 tccgttaaaaatgtctctgct 1338
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>gb|BC058648.1| Mus musculus cDNA clone IMAGE:6406119, **** WARNING: chimeric clone
            ****
          Length = 5086

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  aaatgtctctgctcctgccca 297
            |||||||||||||||||||||
Sbjct: 3529 aaatgtctctgctcctgccca 3509
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>gb|BC059228.1| Mus musculus lines homolog 2 (Drosophila), mRNA (cDNA clone
            IMAGE:6400609), partial cds
          Length = 4244

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  aaatgtctctgctcctgccca 297
            |||||||||||||||||||||
Sbjct: 2698 aaatgtctctgctcctgccca 2678
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>gb|AY318753.1| Bos taurus hepatocyte nuclear factor 4gamma mRNA, complete cds
          Length = 3770

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 tctgctcctgcccacgctgc 303
           ||||||||||||||||||||
Sbjct: 972 tctgctcctgcccacgctgc 991
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      aggagttaaatgaggagagagagg 89
               ||||| ||||||||||||||||||
Sbjct: 1451618 aggagataaatgaggagagagagg 1451595
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>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0049K09, complete sequence
          Length = 154181

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    aggagttaaatgaggagagagagg 89
             ||||| ||||||||||||||||||
Sbjct: 64372 aggagataaatgaggagagagagg 64349
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>ref|NM_205811.1| Bos taurus hepatocyte nuclear factor 4gamma (HNF4G), mRNA
          Length = 3770

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 tctgctcctgcccacgctgc 303
           ||||||||||||||||||||
Sbjct: 972 tctgctcctgcccacgctgc 991
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 159      atttagtcaaactaaaataa 178
                ||||||||||||||||||||
Sbjct: 15575928 atttagtcaaactaaaataa 15575909



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      aggagttaaatgaggagagagagg 89
               ||||| ||||||||||||||||||
Sbjct: 1451618 aggagataaatgaggagagagagg 1451595
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>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20,
             complete sequence
          Length = 193119

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   atttagtcaaactaaaataa 178
             ||||||||||||||||||||
Sbjct: 63294 atttagtcaaactaaaataa 63275
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>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     gcatttattatcctccaaacccta 35
              ||||||||||||||||| ||||||
Sbjct: 132780 gcatttattatcctccagacccta 132757
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>gb|AC009428.4|AC009428 Homo sapiens chromosome , clone RP11-45M12, complete sequence
          Length = 167172

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 192   aggaacggataataattcatgggt 215
             ||||| ||||||||||||||||||
Sbjct: 41302 aggaaaggataataattcatgggt 41325
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>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468H06
          Length = 155031

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gagttaaatgaggagagaga 87
              ||||||||||||||||||||
Sbjct: 141932 gagttaaatgaggagagaga 141913
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 159      atttagtcaaactaaaataa 178
                ||||||||||||||||||||
Sbjct: 15584169 atttagtcaaactaaaataa 15584150



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      aggagttaaatgaggagagagagg 89
               ||||| ||||||||||||||||||
Sbjct: 1451615 aggagataaatgaggagagagagg 1451592
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>emb|AL935142.8| Zebrafish DNA sequence from clone CH211-227M23, complete sequence
          Length = 160780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    taaatgaggagagagaggac 91
             ||||||||||||||||||||
Sbjct: 73012 taaatgaggagagagaggac 73031
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>emb|AL807248.7| Mouse DNA sequence from clone RP23-400M20 on chromosome X, complete
             sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   gtccctatttagtcaaactaaaat 176
             ||||||||||||| ||||||||||
Sbjct: 19834 gtccctatttagttaaactaaaat 19857


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,135,344
Number of Sequences: 3902068
Number of extensions: 3135344
Number of successful extensions: 59086
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58884
Number of HSP's gapped (non-prelim): 197
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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