ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
4dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
7dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
8gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 48 0.017
9gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 48 0.017
10ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glyc... 48 0.017
11gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochon... 44 0.27
12gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial... 44 0.27
13gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, comple... 42 1.1
14gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosom... 40 4.2
15gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 4.2
16ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predic... 40 4.2
17gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 4.2
18gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, co... 40 4.2
19gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosom... 40 4.2
20emb|AL445187.7| Human DNA sequence from clone RP11-576C12 on chr... 40 4.2
21gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, com... 40 4.2
22gb|AC093325.3| Homo sapiens BAC clone RP11-612J15 from 4, comple... 40 4.2
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
26ref|XM_624067.1| PREDICTED: Apis mellifera similar to CG8331-PA ... 40 4.2
27gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, compl... 40 4.2
28gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, comp... 40 4.2
29dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
30dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
31dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
32dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
33dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
34dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
35dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
36dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
37dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
38emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, compl... 40 4.2
39emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 4.2
40gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome... 40 4.2
41gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 gen... 40 4.2
42gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 gen... 40 4.2
43dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2 
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 271   ccggcctgagctcgccgccacggaggaagccggcataccac 311
             |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 71059 ccggccggagctcgccgccgcggaggaagccggcgtaccac 71099



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 271   ccggcctgagctcgccgccacggaggaagccgg 303
             |||||| |||||||||||| |||||||||||||
Sbjct: 97155 ccggccggagctcgccgccgcggaggaagccgg 97187
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 271      ccggcctgagctcgccgccacggaggaagccggcataccac 311
                |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 19587984 ccggccggagctcgccgccgcggaggaagccggcgtaccac 19588024



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 271      ccggcctgagctcgccgccacggaggaagccgg 303
                |||||| |||||||||||| |||||||||||||
Sbjct: 19614080 ccggccggagctcgccgccgcggaggaagccgg 19614112



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 30      aaatatattaatattttcagcaca 53
               ||||||||||||||||||| ||||
Sbjct: 2316963 aaatatattaatattttcaacaca 2316986
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>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 271  ccggcctgagctcgccgccacggaggaagccggcataccac 311
            |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 1762 ccggccggagctcgccgccgcggaggaagccggcgtaccac 1722
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>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 271  ccggcctgagctcgccgccacggaggaagccggcataccac 311
            |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 1719 ccggccggagctcgccgccgcggaggaagccggcgtaccac 1679
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>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 271  ccggcctgagctcgccgccacggaggaagccggcataccac 311
            |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 1653 ccggccggagctcgccgccgcggaggaagccggcgtaccac 1613
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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 271   ccggcctgagctcgccgccacggaggaagccgg 303
             |||||| |||||||||||| |||||||||||||
Sbjct: 23562 ccggccggagctcgccgccgcggaggaagccgg 23594
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>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 271  ccggcctgagctcgccgccacggaggaagccgg 303
            |||||| |||||||||||| |||||||||||||
Sbjct: 1504 ccggccggagctcgccgccgcggaggaagccgg 1472
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 86      aacaatcgactccaaagaagcaga 109
               ||||||||||||||||||||||||
Sbjct: 1522793 aacaatcgactccaaagaagcaga 1522770
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 86    aacaatcgactccaaagaagcaga 109
             ||||||||||||||||||||||||
Sbjct: 73421 aacaatcgactccaaagaagcaga 73398
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>ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb09.354.0090) partial mRNA
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 86   aacaatcgactccaaagaagcaga 109
            ||||||||||||||||||||||||
Sbjct: 1140 aacaatcgactccaaagaagcaga 1163
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>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region,
           partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 149 ccaaaaacaagaaccaatcatc 170
           ||||||||||||||||||||||
Sbjct: 108 ccaaaaacaagaaccaatcatc 87
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>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial
           sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 149 ccaaaaacaagaaccaatcatc 170
           ||||||||||||||||||||||
Sbjct: 107 ccaaaaacaagaaccaatcatc 86
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>gb|AC092652.2| Homo sapiens BAC clone RP11-434H14 from 2, complete sequence
          Length = 161975

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     aatatattaatattttcagca 51
              |||||||||||||||||||||
Sbjct: 127593 aatatattaatattttcagca 127613
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>gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosome 7, complete sequence
          Length = 199480

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    aaattgaactcccatccaaa 153
              ||||||||||||||||||||
Sbjct: 145463 aaattgaactcccatccaaa 145482
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 16      atgtatacatatcgaaatatatta 39
               ||||||| ||||||||||||||||
Sbjct: 1744001 atgtatatatatcgaaatatatta 1743978
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>ref|XM_463507.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 cgccgccacggaggaagccg 302
           ||||||||||||||||||||
Sbjct: 744 cgccgccacggaggaagccg 763
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>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aaagaagcagatgtataaat 118
              ||||||||||||||||||||
Sbjct: 170337 aaagaagcagatgtataaat 170356
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>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    aaagaagcagatgtataaat 118
             ||||||||||||||||||||
Sbjct: 88002 aaagaagcagatgtataaat 88021
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>gb|AC121971.3| Mus musculus BAC clone RP24-275H22 from chromosome 7, complete sequence
          Length = 195611

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaatatattaatattttcag 49
             ||||||||||||||||||||
Sbjct: 98502 aaatatattaatattttcag 98483
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>emb|AL445187.7| Human DNA sequence from clone RP11-576C12 on chromosome 9 Contains a
             vacuolar protein sorting 33B (VPS33B) pseudogene and part
             of a novel gene, complete sequence
          Length = 76114

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    atatattaatattttcagca 51
             ||||||||||||||||||||
Sbjct: 57146 atatattaatattttcagca 57165
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>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaaatatattaatattttca 48
              ||||||||||||||||||||
Sbjct: 157565 gaaatatattaatattttca 157546
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>gb|AC093325.3| Homo sapiens BAC clone RP11-612J15 from 4, complete sequence
          Length = 130754

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    ctacaaaagcctgaaaatgc 229
              ||||||||||||||||||||
Sbjct: 103662 ctacaaaagcctgaaaatgc 103681
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 30      aaatatattaatattttcagcaca 53
               ||||||||||||||||||| ||||
Sbjct: 2607570 aaatatattaatattttcaacaca 2607593
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 30       aaatatattaatattttcagcaca 53
                ||||||| ||||||||||||||||
Sbjct: 15981301 aaatataataatattttcagcaca 15981324



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 30      aaatatattaatattttcagcaca 53
               ||||||| ||||||||||||||||
Sbjct: 3855233 aaatataataatattttcagcaca 3855256
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      cgccgccacggaggaagccg 302
                ||||||||||||||||||||
Sbjct: 37943132 cgccgccacggaggaagccg 37943151



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     aaatatattaatattttcagcaca 53
              ||||||||||||||||||| ||||
Sbjct: 335658 aaatatattaatattttcaacaca 335681
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>ref|XM_624067.1| PREDICTED: Apis mellifera similar to CG8331-PA (LOC551678), mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 34   atattaatattttcagcacataca 57
            ||||||||||||||||||| ||||
Sbjct: 1130 atattaatattttcagcacttaca 1153
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>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence
          Length = 122770

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    aaaaacaagaaccaatcatc 170
              ||||||||||||||||||||
Sbjct: 101675 aaaaacaagaaccaatcatc 101656
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>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     gaaatatattaatattttca 48
              ||||||||||||||||||||
Sbjct: 112849 gaaatatattaatattttca 112868
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   cgccgccacggaggaagccg 302
             ||||||||||||||||||||
Sbjct: 24076 cgccgccacggaggaagccg 24095
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aaatatattaatattttcagcaca 53
             ||||||| ||||||||||||||||
Sbjct: 94345 aaatataataatattttcagcaca 94368
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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     aaatatattaatattttcagcaca 53
              ||||||||||||||||||| ||||
Sbjct: 178801 aaatatattaatattttcaacaca 178824
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0005A05
          Length = 190834

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aaatatattaatattttcagcaca 53
             ||||||||||||||||||| ||||
Sbjct: 87496 aaatatattaatattttcaacaca 87519
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>dbj|AP005526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0571B09
          Length = 147382

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     aaatatattaatattttcagcaca 53
              ||||||||||||||||||| ||||
Sbjct: 121927 aaatatattaatattttcaacaca 121950
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>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0040K22
          Length = 155832

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aaatatattaatattttcagcaca 53
             ||||||| ||||||||||||||||
Sbjct: 62703 aaatataataatattttcagcaca 62726
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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0433B06
          Length = 126258

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aaatatattaatattttcagcaca 53
             ||||||||||||||||||| ||||
Sbjct: 56002 aaatatattaatattttcaacaca 56025
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>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full
            insert sequence
          Length = 2439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 283  cgccgccacggaggaagccg 302
            ||||||||||||||||||||
Sbjct: 1008 cgccgccacggaggaagccg 1027
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>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full
           insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 cgccgccacggaggaagccg 302
           ||||||||||||||||||||
Sbjct: 957 cgccgccacggaggaagccg 976
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>emb|AL132949.2|CEY53F4B Caenorhabditis elegans YAC Y53F4B, complete sequence
          Length = 227606

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaatatattaatattttcag 49
              ||||||||||||||||||||
Sbjct: 143567 aaatatattaatattttcag 143586
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     atatcgaaatatattaatat 43
              ||||||||||||||||||||
Sbjct: 142188 atatcgaaatatattaatat 142169
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>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence
          Length = 217178

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aaattgaactcccatccaaa 153
             ||||||||||||||||||||
Sbjct: 80566 aaattgaactcccatccaaa 80585
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>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 143 tcccatccaaaaacaagaaccaat 166
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 143 tcccatccaaaaacaagaaccaat 166
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   cgccgccacggaggaagccg 302
             ||||||||||||||||||||
Sbjct: 39408 cgccgccacggaggaagccg 39427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,418,546
Number of Sequences: 3902068
Number of extensions: 3418546
Number of successful extensions: 78205
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77922
Number of HSP's gapped (non-prelim): 283
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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