Clone Name | rbart19b07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1612 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 28 cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87 |||||||||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482 Query: 88 atg--tcaagcatcaaactttccc 109 ||| ||||||||||||||||||| Sbjct: 1481 atgtatcaagcatcaaactttccc 1458 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 cctggttaatgagttcctctcatc 158 |||| ||||||||||||||||||| Sbjct: 1434 cctgattaatgagttcctctcatc 1411
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 28 cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87 |||||||||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct: 32337951 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 32338010 Query: 88 atg--tcaagcatcaaactttccc 109 ||| ||||||||||||||||||| Sbjct: 32338011 atgtatcaagcatcaaactttccc 32338034 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 cctggttaatgagttcctctcatc 158 |||| ||||||||||||||||||| Sbjct: 32338058 cctgattaatgagttcctctcatc 32338081
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 28 cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87 |||||||||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct: 113783 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 113842 Query: 88 atg--tcaagcatcaaactttccc 109 ||| ||||||||||||||||||| Sbjct: 113843 atgtatcaagcatcaaactttccc 113866 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 cctggttaatgagttcctctcatc 158 |||| ||||||||||||||||||| Sbjct: 113890 cctgattaatgagttcctctcatc 113913
>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full insert sequence Length = 1612 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 28 cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87 |||||||||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482 Query: 88 atg--tcaagcatcaaactttccc 109 ||| ||||||||||||||||||| Sbjct: 1481 atgtatcaagcatcaaactttccc 1458 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 cctggttaatgagttcctctcatc 158 |||| ||||||||||||||||||| Sbjct: 1434 cctgattaatgagttcctctcatc 1411
>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial phosphate transporter, complete cds Length = 1552 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand = Plus / Minus Query: 28 cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87 |||||||||||| |||| || |||||| ||||||||||||||| || || |||| ||||| Sbjct: 1506 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1447 Query: 88 atg--tcaagcatcaaactttccc 109 ||| ||||||||||||||||||| Sbjct: 1446 atgtatcaagcatcaaactttccc 1423 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 cctggttaatgagttcctctcatc 158 |||| ||||||||||||||||||| Sbjct: 1399 cctgattaatgagttcctctcatc 1376
>gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence Length = 958 Score = 56.0 bits (28), Expect = 6e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 127 ctatttcgcctggttaatgagttcctctcatc 158 |||||||||||| ||||||||||||||||||| Sbjct: 824 ctatttcgcctgtttaatgagttcctctcatc 793
>gb|AY104226.1| Zea mays PCO060710 mRNA sequence Length = 1639 Score = 56.0 bits (28), Expect = 6e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 127 ctatttcgcctggttaatgagttcctctcatc 158 |||||||||||| ||||||||||||||||||| Sbjct: 1393 ctatttcgcctgtttaatgagttcctctcatc 1362
>dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transporter, complete cds Length = 1444 Score = 56.0 bits (28), Expect = 6e-05 Identities = 31/32 (96%) Strand = Plus / Minus Query: 127 ctatttcgcctggttaatgagttcctctcatc 158 |||||||||||| ||||||||||||||||||| Sbjct: 1299 ctatttcgcctgtttaatgagttcctctcatc 1268
>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence Length = 133860 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 catctgataaagacaataacc 175 ||||||||||||||||||||| Sbjct: 98134 catctgataaagacaataacc 98114
>emb|Z81014.1|HSU65A4 Human DNA sequence from clone LL0XNC01-65A4 on chromosome X, complete sequence Length = 16814 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcctctcatctgataaagaca 169 ||||||||||||||||||||| Sbjct: 4862 tcctctcatctgataaagaca 4882
>gb|AC092290.3| Homo sapiens chromosome 5 clone CTD-2376K3, complete sequence Length = 80527 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 caataaccacaaccaggaata 257 ||||||||||||||||||||| Sbjct: 20038 caataaccacaaccaggaata 20058
>gb|AC008610.7| Homo sapiens chromosome 5 clone CTB-129O4, complete sequence Length = 145242 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 caataaccacaaccaggaata 257 ||||||||||||||||||||| Sbjct: 19800 caataaccacaaccaggaata 19780
>gb|AC149879.2| Xenopus tropicalis clone CH216-40M16, complete sequence Length = 177897 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 catctgataaagacaataacc 175 ||||||||||||||||||||| Sbjct: 9395 catctgataaagacaataacc 9375
>gb|DQ066599.1| Homo sapiens mitogen-activated protein kinase 9 (MAPK9) gene, complete cds Length = 48787 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 caataaccacaaccaggaata 257 ||||||||||||||||||||| Sbjct: 11277 caataaccacaaccaggaata 11297
>gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete sequence Length = 204335 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 agttcctctcatctgataaagaca 169 |||||||||||||| ||||||||| Sbjct: 104471 agttcctctcatcttataaagaca 104494
>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the gene for a novel protein, complete sequence Length = 86097 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 agattttgggtgctaaacaa 213 |||||||||||||||||||| Sbjct: 22615 agattttgggtgctaaacaa 22634
>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the 5' end of the gene for a novel protein (LOC255104), the gene for a novel protein (FLJ20225), a novel gene and the 5' end of the gene for a novel protein (KIAA0459), complete sequence Length = 126371 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 taaacaagtaactgatacag 226 |||||||||||||||||||| Sbjct: 12170 taaacaagtaactgatacag 12151
>gb|AC099540.2| Homo sapiens chromosome 3 clone RP11-353D4, complete sequence Length = 167799 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gaatccctcagtacagggga 42 |||||||||||||||||||| Sbjct: 134341 gaatccctcagtacagggga 134360
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 atctgctacaataacaaaag 195 |||||||||||||||||||| Sbjct: 2840215 atctgctacaataacaaaag 2840196
>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 187947 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gaaacaagattatatgggaa 25 |||||||||||||||||||| Sbjct: 125167 gaaacaagattatatgggaa 125186
>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197817 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 gaaacaagattatatgggaa 25 |||||||||||||||||||| Sbjct: 181720 gaaacaagattatatgggaa 181739
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 atctgctacaataacaaaag 195 |||||||||||||||||||| Sbjct: 2840159 atctgctacaataacaaaag 2840140
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 atctgctacaataacaaaag 195 |||||||||||||||||||| Sbjct: 30232 atctgctacaataacaaaag 30251
>gb|AC144944.5| Mus musculus BAC clone RP23-328K6 from 8, complete sequence Length = 185319 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 agttcctctcatctgataaagaca 169 |||||||||||||| ||||||||| Sbjct: 167294 agttcctctcatcttataaagaca 167317 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,239,758 Number of Sequences: 3902068 Number of extensions: 2239758 Number of successful extensions: 55117 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55038 Number of HSP's gapped (non-prelim): 74 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)