ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467970.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
3dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
5dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for ... 82 1e-12
6gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence 56 6e-05
7gb|AY104226.1| Zea mays PCO060710 mRNA sequence 56 6e-05
8dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transp... 56 6e-05
9gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete seq... 42 0.85
10emb|Z81014.1|HSU65A4 Human DNA sequence from clone LL0XNC01-65A4... 42 0.85
11gb|AC092290.3| Homo sapiens chromosome 5 clone CTD-2376K3, compl... 42 0.85
12gb|AC008610.7| Homo sapiens chromosome 5 clone CTB-129O4, comple... 42 0.85
13gb|AC149879.2| Xenopus tropicalis clone CH216-40M16, complete se... 42 0.85
14gb|DQ066599.1| Homo sapiens mitogen-activated protein kinase 9 (... 42 0.85
15gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete... 40 3.4
16emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chr... 40 3.4
17emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chr... 40 3.4
18gb|AC099540.2| Homo sapiens chromosome 3 clone RP11-353D4, compl... 40 3.4
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
20emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-4... 40 3.4
21emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-2... 40 3.4
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
23emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb... 40 3.4
24gb|AC144944.5| Mus musculus BAC clone RP23-328K6 from 8, complet... 40 3.4

>ref|XM_467970.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1612

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 74/84 (88%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87
            |||||||||||| |||| || |||||| ||||||||||||||| || || |||| |||||
Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482

                                    
Query: 88   atg--tcaagcatcaaactttccc 109
            |||  |||||||||||||||||||
Sbjct: 1481 atgtatcaagcatcaaactttccc 1458



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  cctggttaatgagttcctctcatc 158
            |||| |||||||||||||||||||
Sbjct: 1434 cctgattaatgagttcctctcatc 1411



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 74/84 (88%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                            
Query: 28       cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87
                |||||||||||| |||| || |||||| ||||||||||||||| || || |||| |||||
Sbjct: 32337951 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 32338010

                                        
Query: 88       atg--tcaagcatcaaactttccc 109
                |||  |||||||||||||||||||
Sbjct: 32338011 atgtatcaagcatcaaactttccc 32338034



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 135      cctggttaatgagttcctctcatc 158
                |||| |||||||||||||||||||
Sbjct: 32338058 cctgattaatgagttcctctcatc 32338081



to top

>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A11
          Length = 132352

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 74/84 (88%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                          
Query: 28     cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87
              |||||||||||| |||| || |||||| ||||||||||||||| || || |||| |||||
Sbjct: 113783 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 113842

                                      
Query: 88     atg--tcaagcatcaaactttccc 109
              |||  |||||||||||||||||||
Sbjct: 113843 atgtatcaagcatcaaactttccc 113866



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 135    cctggttaatgagttcctctcatc 158
              |||| |||||||||||||||||||
Sbjct: 113890 cctgattaatgagttcctctcatc 113913



to top

>dbj|AK069611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022H13, full
            insert sequence
          Length = 1612

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 74/84 (88%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87
            |||||||||||| |||| || |||||| ||||||||||||||| || || |||| |||||
Sbjct: 1541 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1482

                                    
Query: 88   atg--tcaagcatcaaactttccc 109
            |||  |||||||||||||||||||
Sbjct: 1481 atgtatcaagcatcaaactttccc 1458



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  cctggttaatgagttcctctcatc 158
            |||| |||||||||||||||||||
Sbjct: 1434 cctgattaatgagttcctctcatc 1411



to top

>dbj|AB016065.1| Oryza sativa (japonica cultivar-group) mRNA for mitochondrial
            phosphate transporter, complete cds
          Length = 1552

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 74/84 (88%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 28   cctcagtacaggggatggcagaacctgcgctctaacagccttggtggcctaaaacttatt 87
            |||||||||||| |||| || |||||| ||||||||||||||| || || |||| |||||
Sbjct: 1506 cctcagtacaggtgatgccaaaacctgagctctaacagccttgctgtccaaaaatttatt 1447

                                    
Query: 88   atg--tcaagcatcaaactttccc 109
            |||  |||||||||||||||||||
Sbjct: 1446 atgtatcaagcatcaaactttccc 1423



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  cctggttaatgagttcctctcatc 158
            |||| |||||||||||||||||||
Sbjct: 1399 cctgattaatgagttcctctcatc 1376



to top

>gb|BT018466.1| Zea mays clone EL01N0417F11.d mRNA sequence
          Length = 958

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 127 ctatttcgcctggttaatgagttcctctcatc 158
           |||||||||||| |||||||||||||||||||
Sbjct: 824 ctatttcgcctgtttaatgagttcctctcatc 793



to top

>gb|AY104226.1| Zea mays PCO060710 mRNA sequence
          Length = 1639

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 127  ctatttcgcctggttaatgagttcctctcatc 158
            |||||||||||| |||||||||||||||||||
Sbjct: 1393 ctatttcgcctgtttaatgagttcctctcatc 1362



to top

>dbj|AB016064.1| Zea mays mRNA for mitochondrial phosphate transporter, complete cds
          Length = 1444

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 127  ctatttcgcctggttaatgagttcctctcatc 158
            |||||||||||| |||||||||||||||||||
Sbjct: 1299 ctatttcgcctgtttaatgagttcctctcatc 1268



to top

>gb|AC147921.2| Xenopus tropicalis clone CH216-95N3, complete sequence
          Length = 133860

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   catctgataaagacaataacc 175
             |||||||||||||||||||||
Sbjct: 98134 catctgataaagacaataacc 98114



to top

>emb|Z81014.1|HSU65A4 Human DNA sequence from clone LL0XNC01-65A4 on chromosome X, complete
            sequence
          Length = 16814

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 149  tcctctcatctgataaagaca 169
            |||||||||||||||||||||
Sbjct: 4862 tcctctcatctgataaagaca 4882



to top

>gb|AC092290.3| Homo sapiens chromosome 5 clone CTD-2376K3, complete sequence
          Length = 80527

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   caataaccacaaccaggaata 257
             |||||||||||||||||||||
Sbjct: 20038 caataaccacaaccaggaata 20058



to top

>gb|AC008610.7| Homo sapiens chromosome 5 clone CTB-129O4, complete sequence
          Length = 145242

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   caataaccacaaccaggaata 257
             |||||||||||||||||||||
Sbjct: 19800 caataaccacaaccaggaata 19780



to top

>gb|AC149879.2| Xenopus tropicalis clone CH216-40M16, complete sequence
          Length = 177897

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  catctgataaagacaataacc 175
            |||||||||||||||||||||
Sbjct: 9395 catctgataaagacaataacc 9375



to top

>gb|DQ066599.1| Homo sapiens mitogen-activated protein kinase 9 (MAPK9) gene, complete
             cds
          Length = 48787

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 237   caataaccacaaccaggaata 257
             |||||||||||||||||||||
Sbjct: 11277 caataaccacaaccaggaata 11297



to top

>gb|AC122195.4| Mus musculus BAC clone RP23-49D1 from 8, complete sequence
          Length = 204335

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    agttcctctcatctgataaagaca 169
              |||||||||||||| |||||||||
Sbjct: 104471 agttcctctcatcttataaagaca 104494



to top

>emb|AL662896.9| Human DNA sequence from clone RP13-218H24 on chromosome X Contains the
             gene for a novel protein, complete sequence
          Length = 86097

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   agattttgggtgctaaacaa 213
             ||||||||||||||||||||
Sbjct: 22615 agattttgggtgctaaacaa 22634



to top

>emb|AL391883.17| Human DNA sequence from clone RP11-91K11 on chromosome 1 Contains the
             5' end of the gene for a novel protein (LOC255104), the
             gene for a novel protein (FLJ20225), a novel gene and the
             5' end of the gene for a novel protein (KIAA0459),
             complete sequence
          Length = 126371

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   taaacaagtaactgatacag 226
             ||||||||||||||||||||
Sbjct: 12170 taaacaagtaactgatacag 12151



to top

>gb|AC099540.2| Homo sapiens chromosome 3 clone RP11-353D4, complete sequence
          Length = 167799

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gaatccctcagtacagggga 42
              ||||||||||||||||||||
Sbjct: 134341 gaatccctcagtacagggga 134360



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     atctgctacaataacaaaag 195
               ||||||||||||||||||||
Sbjct: 2840215 atctgctacaataacaaaag 2840196



to top

>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187947

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gaaacaagattatatgggaa 25
              ||||||||||||||||||||
Sbjct: 125167 gaaacaagattatatgggaa 125186



to top

>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197817

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      gaaacaagattatatgggaa 25
              ||||||||||||||||||||
Sbjct: 181720 gaaacaagattatatgggaa 181739



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     atctgctacaataacaaaag 195
               ||||||||||||||||||||
Sbjct: 2840159 atctgctacaataacaaaag 2840140



to top

>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145539

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   atctgctacaataacaaaag 195
             ||||||||||||||||||||
Sbjct: 30232 atctgctacaataacaaaag 30251



to top

>gb|AC144944.5| Mus musculus BAC clone RP23-328K6 from 8, complete sequence
          Length = 185319

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 146    agttcctctcatctgataaagaca 169
              |||||||||||||| |||||||||
Sbjct: 167294 agttcctctcatcttataaagaca 167317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,239,758
Number of Sequences: 3902068
Number of extensions: 2239758
Number of successful extensions: 55117
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55038
Number of HSP's gapped (non-prelim): 74
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top