Clone Name | rbart19b05 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CN12L_MOUSE (Q8BFV2) CSN12-like protein | 29 | 3.3 | 2 | CN12L_HUMAN (Q5JVF3) CSN12-like protein | 29 | 3.3 | 3 | RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor | 28 | 7.3 | 4 | PRIM_MYXXA (P50070) DNA primase (EC 2.7.7.-) | 27 | 9.5 |
---|
>CN12L_MOUSE (Q8BFV2) CSN12-like protein| Length = 399 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 120 QLQLGSLQSECRQPLLPSIYLILQH*QQFTSHLKMIYSGGNH 245 +LQ+ S + +C+Q L P + + F +HL+ Y+ GNH Sbjct: 40 RLQMASPEEKCQQVLEPP------YDEMFAAHLRCTYAVGNH 75
>CN12L_HUMAN (Q5JVF3) CSN12-like protein| Length = 399 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 120 QLQLGSLQSECRQPLLPSIYLILQH*QQFTSHLKMIYSGGNH 245 +LQ+ S + +C+Q L P + + F +HL+ Y+ GNH Sbjct: 40 RLQMASPEEKCQQVLEPP------YDEMFAAHLRCTYAVGNH 75
>RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor| Length = 213 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +1 Query: 97 SCYPAGVISYS*DLCNLNVGSHCC 168 SC P+G I+ + CN + GS CC Sbjct: 53 SCQPSGAITGTSGDCNADNGSECC 76
>PRIM_MYXXA (P50070) DNA primase (EC 2.7.7.-)| Length = 606 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/57 (26%), Positives = 27/57 (47%) Frame = -2 Query: 171 MATMAADIQIAEILAVADDAGRVT*LV*RVSSGVDWLVLYDTHTHRWPSYYDMHERR 1 M + + +I E+L D G ++ V +G +W H + PS+Y + E+R Sbjct: 1 MGVVIPEHKIQEVLERVDLVGLISRHVDLKKAGREWKACCPFHQEKTPSFYVVPEKR 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,119,077 Number of Sequences: 219361 Number of extensions: 711214 Number of successful extensions: 1392 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1392 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)