ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CN12L_MOUSE (Q8BFV2) CSN12-like protein 29 3.3
2CN12L_HUMAN (Q5JVF3) CSN12-like protein 29 3.3
3RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor 28 7.3
4PRIM_MYXXA (P50070) DNA primase (EC 2.7.7.-) 27 9.5

>CN12L_MOUSE (Q8BFV2) CSN12-like protein|
          Length = 399

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 120 QLQLGSLQSECRQPLLPSIYLILQH*QQFTSHLKMIYSGGNH 245
           +LQ+ S + +C+Q L P       + + F +HL+  Y+ GNH
Sbjct: 40  RLQMASPEEKCQQVLEPP------YDEMFAAHLRCTYAVGNH 75



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>CN12L_HUMAN (Q5JVF3) CSN12-like protein|
          Length = 399

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 120 QLQLGSLQSECRQPLLPSIYLILQH*QQFTSHLKMIYSGGNH 245
           +LQ+ S + +C+Q L P       + + F +HL+  Y+ GNH
Sbjct: 40  RLQMASPEEKCQQVLEPP------YDEMFAAHLRCTYAVGNH 75



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>RIP3_ORYSA (Q9FWT5) Ripening-related protein 3 precursor|
          Length = 213

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  SCYPAGVISYS*DLCNLNVGSHCC 168
           SC P+G I+ +   CN + GS CC
Sbjct: 53  SCQPSGAITGTSGDCNADNGSECC 76



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>PRIM_MYXXA (P50070) DNA primase (EC 2.7.7.-)|
          Length = 606

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 171 MATMAADIQIAEILAVADDAGRVT*LV*RVSSGVDWLVLYDTHTHRWPSYYDMHERR 1
           M  +  + +I E+L   D  G ++  V    +G +W      H  + PS+Y + E+R
Sbjct: 1   MGVVIPEHKIQEVLERVDLVGLISRHVDLKKAGREWKACCPFHQEKTPSFYVVPEKR 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,119,077
Number of Sequences: 219361
Number of extensions: 711214
Number of successful extensions: 1392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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