ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart19b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
2dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
3dbj|AK106292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
4dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
5gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 42 1.2
6ref|NM_019728.2| Mus musculus defensin beta 4 (Defb4), mRNA 42 1.2
7gb|AC116394.22| Mus musculus chromosome 8, clone RP23-100C12, co... 42 1.2
8gb|AE014075.1| Escherichia coli CFT073, complete genome 42 1.2
9gb|AC163997.3| Mus musculus chromosome 8, clone RP24-273M3, comp... 42 1.2
10gb|CP000243.1| Escherichia coli UTI89, complete genome 42 1.2
11emb|AL163537.11| Human DNA sequence from clone RP11-302C13 on ch... 42 1.2
12gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 42 1.2
13gb|BC099883.1| Mus musculus defensin beta 4, mRNA (cDNA clone MG... 42 1.2
14gb|BC099882.1| Mus musculus defensin beta 4, mRNA (cDNA clone MG... 42 1.2
15gb|BC100674.1| Mus musculus defensin beta 4, mRNA (cDNA clone MG... 42 1.2
16gb|BC100675.1| Mus musculus defensin beta 4, mRNA (cDNA clone MG... 42 1.2
17dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 42 1.2
18dbj|AK009306.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 1.2
19dbj|AK009061.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 1.2
20gb|AF155882.2|AF155882 Mus musculus beta defensin-4 mRNA, comple... 42 1.2
21gb|AF287475.1|AF287475 Mus musculus beta-defensin 4 precursor (B... 42 1.2
22gb|AF288371.1|AF288371 Mus musculus beta-defensin 4 variant gene... 42 1.2
23gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 42 1.2
24emb|AL935114.8| Zebrafish DNA sequence from clone CH211-182P11, ... 42 1.2
25emb|BX897713.10| Zebrafish DNA sequence from clone DKEY-217M24 i... 42 1.2
26gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 42 1.2
27dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 42 1.2
28gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 42 1.2
29gb|CP000036.1| Shigella boydii Sb227, complete genome 42 1.2
30gb|CP000038.1| Shigella sonnei Ss046, complete genome 42 1.2
31gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, com... 40 4.6
32ref|XM_390620.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.6
33gb|AC124391.3| Mus musculus BAC clone RP24-439L13 from chromosom... 40 4.6
34gb|AC125225.4| Mus musculus BAC clone RP23-36I17 from 6, complet... 40 4.6
35gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, comp... 40 4.6
36dbj|AK138072.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.6
37gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complet... 40 4.6
38gb|AC122435.5| Mus musculus BAC clone RP24-199D4 from 8, complet... 40 4.6
39gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 40 4.6
40emb|AL133373.5|CNS01DUY Human chromosome 14 DNA sequence BAC R-2... 40 4.6
41emb|AL732453.6| Mouse DNA sequence from clone RP23-33D23 on chro... 40 4.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                     
Query: 249     ctatatggacatgattgagtaatgcgactccagaaccctctgcctcttggtctg 302
               |||||||||||| |||||| |||| |||||||| | ||||||||||||| ||||
Sbjct: 3129455 ctatatggacataattgagcaatgtgactccaggatcctctgcctcttgctctg 3129402
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>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0041E11
          Length = 146335

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 249   ctatatggacatgattgagtaatgcgactccagaaccctctgcctcttggtctg 302
             |||||||||||| |||||| |||| |||||||| | ||||||||||||| ||||
Sbjct: 73243 ctatatggacataattgagcaatgtgactccaggatcctctgcctcttgctctg 73190
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>dbj|AK106292.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B04, full
            insert sequence
          Length = 1473

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 249  ctatatggacatgattgagtaatgcgactccagaaccctctgcctcttggtctg 302
            |||||||||||| |||||| |||| |||||||| | ||||||||||||| ||||
Sbjct: 1279 ctatatggacataattgagcaatgtgactccaggatcctctgcctcttgctctg 1226
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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 249   ctatatggacatgattgagtaatgcgactccagaaccctctgcctcttggtctg 302
             |||||||||||| |||||| |||| |||||||| | ||||||||||||| ||||
Sbjct: 97495 ctatatggacataattgagcaatgtgactccaggatcctctgcctcttgctctg 97442
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2518108 cagcactaacagcagttcact 2518128
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>ref|NM_019728.2| Mus musculus defensin beta 4 (Defb4), mRNA
          Length = 456

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>gb|AC116394.22| Mus musculus chromosome 8, clone RP23-100C12, complete sequence
          Length = 186505

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 173    tatctatcttatcttacagca 193
              |||||||||||||||||||||
Sbjct: 153545 tatctatcttatcttacagca 153525
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2797655 cagcactaacagcagttcact 2797675
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>gb|AC163997.3| Mus musculus chromosome 8, clone RP24-273M3, complete sequence
          Length = 147745

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   tatctatcttatcttacagca 193
             |||||||||||||||||||||
Sbjct: 64449 tatctatcttatcttacagca 64469
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2676541 cagcactaacagcagttcact 2676561
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>emb|AL163537.11| Human DNA sequence from clone RP11-302C13 on chromosome 13 Contains
             part of the GPC5 gene for glypican 5 and a novel gene
             similar to fatty acid binding protein 5
             (psoriasis-associated), complete sequence
          Length = 58262

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   attgttgccatctatctatct 181
             |||||||||||||||||||||
Sbjct: 23744 attgttgccatctatctatct 23764
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2514640 cagcactaacagcagttcact 2514660
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>gb|BC099883.1| Mus musculus defensin beta 4, mRNA (cDNA clone MGC:123519
           IMAGE:40040627), complete cds
          Length = 353

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>gb|BC099882.1| Mus musculus defensin beta 4, mRNA (cDNA clone MGC:123518
           IMAGE:40040625), complete cds
          Length = 357

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>gb|BC100674.1| Mus musculus defensin beta 4, mRNA (cDNA clone MGC:123517
           IMAGE:40040624), complete cds
          Length = 357

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>gb|BC100675.1| Mus musculus defensin beta 4, mRNA (cDNA clone MGC:123520
           IMAGE:40040630), complete cds
          Length = 357

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2522064 cagcactaacagcagttcact 2522084
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>dbj|AK009306.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310011K19 product:defensin beta 4, full
           insert sequence
          Length = 321

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>dbj|AK009061.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310001F05 product:defensin beta 4, full
           insert sequence
          Length = 456

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 223 tatctatcttatcttacagca 203
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>gb|AF155882.2|AF155882 Mus musculus beta defensin-4 mRNA, complete cds
          Length = 327

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 173 tatctatcttatcttacagca 193
           |||||||||||||||||||||
Sbjct: 203 tatctatcttatcttacagca 183
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>gb|AF287475.1|AF287475 Mus musculus beta-defensin 4 precursor (Bdef4) gene, complete cds
          Length = 4010

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 173  tatctatcttatcttacagca 193
            |||||||||||||||||||||
Sbjct: 3757 tatctatcttatcttacagca 3737
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>gb|AF288371.1|AF288371 Mus musculus beta-defensin 4 variant gene, complete cds
          Length = 4077

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 173  tatctatcttatcttacagca 193
            |||||||||||||||||||||
Sbjct: 4040 tatctatcttatcttacagca 4020
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2496246 cagcactaacagcagttcact 2496266
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>emb|AL935114.8| Zebrafish DNA sequence from clone CH211-182P11, complete sequence
          Length = 152177

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 276   ctccagaaccctctgcctcttggtc 300
             |||||||||||||| ||||||||||
Sbjct: 78282 ctccagaaccctctccctcttggtc 78258
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>emb|BX897713.10| Zebrafish DNA sequence from clone DKEY-217M24 in linkage group 4,
             complete sequence
          Length = 52569

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   attgttgccatctatctatct 181
             |||||||||||||||||||||
Sbjct: 50564 attgttgccatctatctatct 50544
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 3313362 cagcactaacagcagttcact 3313382
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 3243402 cagcactaacagcagttcact 3243422
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2392646 cagcactaacagcagttcact 2392666
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2418639 cagcactaacagcagttcact 2418659
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 189     cagcactaacagcagttcact 209
               |||||||||||||||||||||
Sbjct: 2629205 cagcactaacagcagttcact 2629225
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>gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, complete sequence
          Length = 238453

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  atcagctacagctaggatct 137
            ||||||||||||||||||||
Sbjct: 5217 atcagctacagctaggatct 5236
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>ref|XM_390620.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10444.1)
           partial mRNA
          Length = 930

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 cttacagcactaacagcagt 204
           ||||||||||||||||||||
Sbjct: 158 cttacagcactaacagcagt 177
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>gb|AC124391.3| Mus musculus BAC clone RP24-439L13 from chromosome 18, complete
             sequence
          Length = 153492

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 202   agttcacttcacacctcaagatgatata 229
             |||||||||||||| |||||||||||||
Sbjct: 29774 agttcacttcacac-tcaagatgatata 29800
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>gb|AC125225.4| Mus musculus BAC clone RP23-36I17 from 6, complete sequence
          Length = 215406

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    atcagctacagctaggatct 137
              ||||||||||||||||||||
Sbjct: 209524 atcagctacagctaggatct 209543
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>gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, complete sequence
          Length = 195985

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   catctatctatcttatctta 188
             ||||||||||||||||||||
Sbjct: 52308 catctatctatcttatctta 52327
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>dbj|AK138072.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130083O13 product:RIKEN cDNA 1190002F15
            gene, full insert sequence
          Length = 4468

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  ttgccatctatctatcttat 184
            ||||||||||||||||||||
Sbjct: 2459 ttgccatctatctatcttat 2478
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>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence
          Length = 211512

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ttgccatctatctatcttat 184
              ||||||||||||||||||||
Sbjct: 159432 ttgccatctatctatcttat 159451
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>gb|AC122435.5| Mus musculus BAC clone RP24-199D4 from 8, complete sequence
          Length = 161717

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   catctatctatcttatctta 188
             ||||||||||||||||||||
Sbjct: 30834 catctatctatcttatctta 30815
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    ttgccatctatctatcttat 184
              ||||||||||||||||||||
Sbjct: 175664 ttgccatctatctatcttat 175645
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>emb|AL133373.5|CNS01DUY Human chromosome 14 DNA sequence BAC R-248B24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162943

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tgccatctatctatcttatc 185
             ||||||||||||||||||||
Sbjct: 25640 tgccatctatctatcttatc 25621
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>emb|AL732453.6| Mouse DNA sequence from clone RP23-33D23 on chromosome 2, complete
             sequence
          Length = 77977

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   cctctgcctcttggtctgta 304
             ||||||||||||||||||||
Sbjct: 54017 cctctgcctcttggtctgta 54036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,454,186
Number of Sequences: 3902068
Number of extensions: 3454186
Number of successful extensions: 64244
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 64061
Number of HSP's gapped (non-prelim): 184
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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