ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_948489.1| Theileria annulata strain Ankara hypothetical p... 42 0.090
2gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete se... 40 0.35
3emb|AL139084.9| Human DNA sequence from clone RP11-318G11 on chr... 40 0.35
4gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, compl... 40 0.35
5emb|CR931761.6| Zebrafish DNA sequence from clone DKEY-27P1 in l... 40 0.35
6gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, compl... 38 1.4
7emb|X06151.1|PVORF1 Proteus vulgaris orf operon partial sequence... 38 1.4
8emb|X06144.1|PVRFP P. vulgaris frd operon for fumarate reductase... 38 1.4
9gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, compl... 38 1.4
10gb|AC090858.6| Homo sapiens chromosome 11, clone RP11-676E14, co... 38 1.4
11gb|AC023396.4| Homo sapiens chromosome 8, clone RP11-545M21, com... 38 1.4
12gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, comp... 38 1.4
13gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, com... 38 1.4
14gb|AF437307.1|AF437307 Symbiont bacterium of Axinella verrucosa ... 38 1.4
15gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, comp... 38 1.4
16emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, com... 38 1.4
17gb|L43967.2| Mycoplasma genitalium G37, complete genome 38 1.4
18ref|XM_629353.1| Dictyostelium discoideum hypothetical protein (... 36 5.5
19gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 36 5.5
20gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com... 36 5.5
21gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, co... 36 5.5
22gb|U15440.1|LIU15440 Lettuce infectious yellows virus RNA 1 meth... 36 5.5
23gb|AC116979.3| Dictyostelium discoideum chromosome 2 map 6445720... 36 5.5
24ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA 36 5.5
25gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, com... 36 5.5
26gb|AC125474.16| Medicago truncatula clone mth2-16l11, complete s... 36 5.5
27gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome... 36 5.5
28gb|AC121246.28| Medicago truncatula clone mth2-35m8, complete se... 36 5.5
29gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete se... 36 5.5
30ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA 36 5.5
31emb|AL354951.7| Human DNA sequence from clone RP11-451M19 on chr... 36 5.5
32emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 o... 36 5.5
33emb|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8 36 5.5
34emb|CR628337.1| Legionella pneumophila str. Lens complete genome 36 5.5
35emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chr... 36 5.5
36emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in... 36 5.5
37emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in ... 36 5.5
38gb|AC128710.2| Homo sapiens 3 BAC RP11-307C21 (Roswell Park Canc... 36 5.5
39gb|AC123024.12| Homo sapiens 12 BAC RP11-264E13 (Roswell Park Ca... 36 5.5
40gb|AF228727.4| Homo sapiens chromosome 8 clone CTC-215C12 map 8q... 36 5.5
41gb|U49956.2| Caenorhabditis elegans cosmid M03A1, complete sequence 36 5.5
42gb|AC123025.5| Homo sapiens 12 BAC RP11-642J16 (Roswell Park Can... 36 5.5
43gb|AC090049.17| Homo sapiens 12 BAC RP11-587P21 (Roswell Park Ca... 36 5.5
44gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, co... 36 5.5
45gb|AC087336.5| Mus musculus chromosome 6, clone RP23-446O7, comp... 36 5.5
46dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion... 36 5.5
47gb|AC024569.5| Homo sapiens chromosome 5 clone CTD-2188H20, comp... 36 5.5
48gb|AC009622.9| Homo sapiens chromosome , clone RP11-207A4, compl... 36 5.5
49gb|AC007885.5| Drosophila melanogaster, chromosome 2R, region 60... 36 5.5
50gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60... 36 5.5
51ref|NM_001019252.1| Schizosaccharomyces pombe 972h- hypothetical... 36 5.5
52dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 36 5.5
53gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, part... 36 5.5
54dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN ful... 36 5.5
55emb|BX649448.10| Zebrafish DNA sequence from clone DKEY-169I5 in... 36 5.5
56gb|AC008901.5|AC008901 Homo sapiens chromosome 5 clone CTD-2245E... 36 5.5
57gb|AC007560.4| Homo sapiens BAC clone RP11-386G20 from 2, comple... 36 5.5
58gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca... 36 5.5
59dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 36 5.5
60dbj|AB013750.1| Schizosaccharomyces pombe fas2 gene for fatty ac... 36 5.5
61dbj|AB013749.1| Schizosaccharomyces pombe fas2 gene for fatty ac... 36 5.5
62dbj|AB013748.1| Schizosaccharomyces pombe fas2 gene for fatty ac... 36 5.5
63dbj|AB013747.1| Schizosaccharomyces pombe fas2 gene for fatty ac... 36 5.5
64dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 36 5.5
65emb|CT824639.4| Human DNA sequence from clone XX-HCC1954_10I14, ... 36 5.5
66gb|U22945.2|SOU22945 Debaryomyces occidentalis high affinity pot... 36 5.5
67gb|AE003466.2| Drosophila melanogaster chromosome 2R, section 73... 36 5.5
68gb|AC116556.14| Mus musculus strain C57BL/6J chromosome 8 clone ... 36 5.5
69gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, compl... 36 5.5
70gb|AC140919.2| Mus musculus BAC clone RP24-510L10 from 1, comple... 36 5.5
71emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on ch... 36 5.5
72gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, comple... 36 5.5
73gb|U00060.1|YSCH9332 Saccharomyces cerevisiae chromosome VIII co... 36 5.5
74emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 36 5.5
75gb|U82216.1|SPU82216 Schizosaccharomyces pombe fatty acid synthe... 36 5.5
76gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome... 36 5.5
77emb|AL359237.4|CNS05TEO Human chromosome 14 DNA sequence BAC R-1... 36 5.5
78emb|AJ242989.1|BFL242989 Branchiostoma floridae tip120 gene (par... 36 5.5
79dbj|D83412.1|YSPLSD1A Schizosaccharomyces pombe fatty acid synth... 36 5.5 
>ref|XM_948489.1| Theileria annulata strain Ankara hypothetical protein (TA09625)
           partial mRNA
          Length = 2484

 Score = 42.1 bits (21), Expect = 0.090
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 25  atttcaaaccaataataaaag 45
           |||||||||||||||||||||
Sbjct: 243 atttcaaaccaataataaaag 263
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>gb|AC145023.4| Medicago truncatula clone mth2-30j24, complete sequence
          Length = 90381

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    atttcaatttcaaaccaata 38
             ||||||||||||||||||||
Sbjct: 20539 atttcaatttcaaaccaata 20558
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>emb|AL139084.9| Human DNA sequence from clone RP11-318G11 on chromosome 13 Contains
             part of the gene for zizimin1 (KIAA1085) and a ribosomal
             protein L7 (RPL7) pseudogene, complete sequence
          Length = 80803

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tttcaatttcaaaccaataa 39
             ||||||||||||||||||||
Sbjct: 49672 tttcaatttcaaaccaataa 49691
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>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence
          Length = 126394

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ctcatatttcaatttcaaac 33
             ||||||||||||||||||||
Sbjct: 93086 ctcatatttcaatttcaaac 93067
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>emb|CR931761.6| Zebrafish DNA sequence from clone DKEY-27P1 in linkage group 10,
             complete sequence
          Length = 151872

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aatttcaaaccaataataaa 43
             ||||||||||||||||||||
Sbjct: 27997 aatttcaaaccaataataaa 28016
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>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence
          Length = 242222

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     ttcaaaccaataataaaag 45
              |||||||||||||||||||
Sbjct: 176675 ttcaaaccaataataaaag 176693
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>emb|X06151.1|PVORF1 Proteus vulgaris orf operon partial sequence orf operon
          Length = 1730

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 23   caatttcaaaccaataata 41
            |||||||||||||||||||
Sbjct: 1628 caatttcaaaccaataata 1610
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>emb|X06144.1|PVRFP P. vulgaris frd operon for fumarate reductase (EC 1.3.99.1)
          Length = 3960

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   caatttcaaaccaataata 41
            |||||||||||||||||||
Sbjct: 3903 caatttcaaaccaataata 3921
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>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence
          Length = 186563

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   ttcaaaccaataataaaag 45
            |||||||||||||||||||
Sbjct: 7860 ttcaaaccaataataaaag 7878
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>gb|AC090858.6| Homo sapiens chromosome 11, clone RP11-676E14, complete sequence
          Length = 168906

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    atttcaaaccaataataaa 43
             |||||||||||||||||||
Sbjct: 96396 atttcaaaccaataataaa 96378
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>gb|AC023396.4| Homo sapiens chromosome 8, clone RP11-545M21, complete sequence
          Length = 165770

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      cccacccaatgctcatatt 21
              |||||||||||||||||||
Sbjct: 144655 cccacccaatgctcatatt 144673
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>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence
          Length = 180765

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 25   atttcaaaccaataataaa 43
            |||||||||||||||||||
Sbjct: 1136 atttcaaaccaataataaa 1118
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>gb|AC018437.10| Homo sapiens chromosome 8, clone RP11-77B22, complete sequence
          Length = 192586

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      cccacccaatgctcatatt 21
              |||||||||||||||||||
Sbjct: 182039 cccacccaatgctcatatt 182021
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>gb|AF437307.1|AF437307 Symbiont bacterium of Axinella verrucosa cytochrome oxidase subunit
           1 (cox1) gene, partial cds
          Length = 539

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 26  tttcaaaccaataataaaa 44
           |||||||||||||||||||
Sbjct: 443 tttcaaaccaataataaaa 425
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>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence
          Length = 245367

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 27     ttcaaaccaataataaaag 45
              |||||||||||||||||||
Sbjct: 177007 ttcaaaccaataataaaag 177025
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>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence
          Length = 277607

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tttcaaaccaataataaaa 44
              |||||||||||||||||||
Sbjct: 242532 tttcaaaccaataataaaa 242514
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>gb|L43967.2| Mycoplasma genitalium G37, complete genome
          Length = 580076

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 26     tttcaaaccaataataaaa 44
              |||||||||||||||||||
Sbjct: 365485 tttcaaaccaataataaaa 365467
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>ref|XM_629353.1| Dictyostelium discoideum hypothetical protein (DDB0191808), partial
           mRNA
          Length = 777

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 15  tcatatttcaatttcaaa 32
           ||||||||||||||||||
Sbjct: 396 tcatatttcaatttcaaa 413
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     ctcatatttcaatttcaa 31
              ||||||||||||||||||
Sbjct: 304882 ctcatatttcaatttcaa 304865
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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     tttcaatttcaaaccaat 37
              ||||||||||||||||||
Sbjct: 153763 tttcaatttcaaaccaat 153746
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>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome
          Length = 706569

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     atttcaaaccaataataa 42
              ||||||||||||||||||
Sbjct: 212957 atttcaaaccaataataa 212940
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>gb|U15440.1|LIU15440 Lettuce infectious yellows virus RNA 1 methyltransferase and
            RNA-dependent RNA polymerase genes, complete cds
          Length = 8118

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 23   caatttcaaaccaataataaaa 44
            |||||| |||||||||||||||
Sbjct: 7779 caatttgaaaccaataataaaa 7800
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>gb|AC116979.3| Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4,
             complete sequence
          Length = 331039

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 44278 aatttcaaaccaataata 44261
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>ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 2830

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1056 tttcaatttcaaaccaat 1039
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>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence
          Length = 240406

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 14     ctcatatttcaatttcaaacca 35
              ||||||||||||||| ||||||
Sbjct: 101733 ctcatatttcaatttaaaacca 101712
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>gb|AC125474.16| Medicago truncatula clone mth2-16l11, complete sequence
          Length = 127369

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    catatttcaatttcaaac 33
             ||||||||||||||||||
Sbjct: 58883 catatttcaatttcaaac 58866
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>gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome 6, complete sequence
          Length = 190414

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     ttcaatttcaaaccaata 38
              ||||||||||||||||||
Sbjct: 148564 ttcaatttcaaaccaata 148581
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>gb|AC121246.28| Medicago truncatula clone mth2-35m8, complete sequence
          Length = 124137

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 16     catatttcaatttcaaac 33
              ||||||||||||||||||
Sbjct: 115504 catatttcaatttcaaac 115487
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>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence
          Length = 127640

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 25    atttcaaaccaataataa 42
             ||||||||||||||||||
Sbjct: 70239 atttcaaaccaataataa 70222
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>ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 3578

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1060 tttcaatttcaaaccaat 1043
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>emb|AL354951.7| Human DNA sequence from clone RP11-451M19 on chromosome 10 Contains a
            ribosomal protein L21 (RPL21) pseudogene, the XPNPEP1
            gene for X-prolyl aminopeptidase (aminopeptidase P) 1,
            soluble (SAMP, XPNPEP, XPNPEPL), a novel gene and one CpG
            island, complete sequence
          Length = 205329

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 9    caatgctcatatttcaatttca 30
            |||||||| |||||||||||||
Sbjct: 7503 caatgctcttatttcaatttca 7524
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>emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 on chromosome Xq21.1-22.2,
             complete sequence
          Length = 118153

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 94199 aatttcaaaccaataata 94182
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>emb|Z98762.1|SPAC4A8 S.pombe chromosome I cosmid c4A8
          Length = 43895

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    ctcatatttcaatttcaa 31
             ||||||||||||||||||
Sbjct: 34124 ctcatatttcaatttcaa 34141
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 17    atatttcaatttcaaacc 34
             ||||||||||||||||||
Sbjct: 81195 atatttcaatttcaaacc 81212
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>emb|AL669853.5| Mouse DNA sequence from clone RP23-204F22 on chromosome 11 Contains
             part of the Abca13 gene for ATP-binding cassette
             sub-family A (ABC1) member 13, complete sequence
          Length = 205759

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    atttcaatttcaaaccaa 36
             ||||||||||||||||||
Sbjct: 25140 atttcaatttcaaaccaa 25123
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>emb|BX663604.9| Zebrafish DNA sequence from clone CH211-222K9 in linkage group 7,
             complete sequence
          Length = 161194

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    ctcatatttcaatttcaa 31
             ||||||||||||||||||
Sbjct: 97015 ctcatatttcaatttcaa 96998
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>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11,
             complete sequence
          Length = 230487

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    tcatatttcaatttcaaa 32
             ||||||||||||||||||
Sbjct: 64302 tcatatttcaatttcaaa 64319
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>gb|AC128710.2| Homo sapiens 3 BAC RP11-307C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 135514

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 10    aatgctcatatttcaatttcaa 31
             ||||| ||||||||||||||||
Sbjct: 58222 aatgcacatatttcaatttcaa 58201
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>gb|AC123024.12| Homo sapiens 12 BAC RP11-264E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 82875

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    tatttcaatttcaaacca 35
             ||||||||||||||||||
Sbjct: 21279 tatttcaatttcaaacca 21296
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>gb|AF228727.4| Homo sapiens chromosome 8 clone CTC-215C12 map 8q24.3, complete
             sequence
          Length = 121358

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 53789 aatttcaaaccaataata 53806
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>gb|U49956.2| Caenorhabditis elegans cosmid M03A1, complete sequence
          Length = 44362

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    tttcaatttcaaaccaat 37
             ||||||||||||||||||
Sbjct: 20561 tttcaatttcaaaccaat 20544
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>gb|AC123025.5| Homo sapiens 12 BAC RP11-642J16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 89119

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    tatttcaatttcaaacca 35
             ||||||||||||||||||
Sbjct: 29523 tatttcaatttcaaacca 29540
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>gb|AC090049.17| Homo sapiens 12 BAC RP11-587P21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 105977

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    ttcaaaccaataataaaa 44
             ||||||||||||||||||
Sbjct: 19104 ttcaaaccaataataaaa 19121
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>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 21     ttcaatttcaaaccaata 38
              ||||||||||||||||||
Sbjct: 141425 ttcaatttcaaaccaata 141408
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>gb|AC087336.5| Mus musculus chromosome 6, clone RP23-446O7, complete sequence
          Length = 181773

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    ttcaatttcaaaccaata 38
             ||||||||||||||||||
Sbjct: 81551 ttcaatttcaaaccaata 81568



 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    ttcaatttcaaaccaata 38
             ||||||||||||||||||
Sbjct: 27130 ttcaatttcaaaccaata 27147
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>dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120431F07
            product:desmoglein 3, full insert sequence
          Length = 4109

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1030 tttcaatttcaaaccaat 1013
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>gb|AC024569.5| Homo sapiens chromosome 5 clone CTD-2188H20, complete sequence
          Length = 193547

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     ttcaaaccaataataaaa 44
              ||||||||||||||||||
Sbjct: 186360 ttcaaaccaataataaaa 186377
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>gb|AC009622.9| Homo sapiens chromosome , clone RP11-207A4, complete sequence
          Length = 183687

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 70661 aatttcaaaccaataata 70644
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>gb|AC007885.5| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
              BACR02G15, complete sequence
          Length = 156955

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 23     caatttcaaaccaataat 40
              ||||||||||||||||||
Sbjct: 122103 caatttcaaaccaataat 122120
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>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
             BACR17E16, complete sequence
          Length = 180162

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 23    caatttcaaaccaataat 40
             ||||||||||||||||||
Sbjct: 55568 caatttcaaaccaataat 55585
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>ref|NM_001019252.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC4A8.11c),
           partial mRNA
          Length = 5529

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 201 ctcatatttcaatttcaa 184
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>dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732482D04 product:desmoglein 3, full
            insert sequence
          Length = 3483

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1051 tttcaatttcaaaccaat 1034
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>gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, partial cds
          Length = 2979

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 20  tttcaatttcaaaccaat 37
           ||||||||||||||||||
Sbjct: 958 tttcaatttcaaaccaat 941
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>dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930125N18 product:desmoglein 3, full
            insert sequence
          Length = 3578

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1060 tttcaatttcaaaccaat 1043
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>emb|BX649448.10| Zebrafish DNA sequence from clone DKEY-169I5 in linkage group 22,
             complete sequence
          Length = 184512

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    atttcaatttcaaaccaa 36
             ||||||||||||||||||
Sbjct: 21764 atttcaatttcaaaccaa 21747
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>gb|AC008901.5|AC008901 Homo sapiens chromosome 5 clone CTD-2245E22, complete sequence
          Length = 165916

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     ttcaaaccaataataaaa 44
              ||||||||||||||||||
Sbjct: 146791 ttcaaaccaataataaaa 146774
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>gb|AC007560.4| Homo sapiens BAC clone RP11-386G20 from 2, complete sequence
          Length = 124185

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    ttcaaaccaataataaaa 44
             ||||||||||||||||||
Sbjct: 13952 ttcaaaccaataataaaa 13969
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>gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160095

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 28     tcaaaccaataataaaag 45
              ||||||||||||||||||
Sbjct: 121657 tcaaaccaataataaaag 121640
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     atttcaaaccaataataa 42
              ||||||||||||||||||
Sbjct: 467071 atttcaaaccaataataa 467054
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>dbj|AB013750.1| Schizosaccharomyces pombe fas2 gene for fatty acid synthase
           alpha-subunit, complete cds, strain:fas2/lsd1-H518
          Length = 5529

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 201 ctcatatttcaatttcaa 184
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>dbj|AB013749.1| Schizosaccharomyces pombe fas2 gene for fatty acid synthase
           alpha-subunit, complete cds, strain:fas2/lsd1-H265
          Length = 5529

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 201 ctcatatttcaatttcaa 184
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>dbj|AB013748.1| Schizosaccharomyces pombe fas2 gene for fatty acid synthase
           alpha-subunit, complete cds, strain:fas2/lsd1-H201
          Length = 5529

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 201 ctcatatttcaatttcaa 184
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>dbj|AB013747.1| Schizosaccharomyces pombe fas2 gene for fatty acid synthase
           alpha-subunit, complete cds
          Length = 5529

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 201 ctcatatttcaatttcaa 184
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>dbj|AP002061.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T21E2
          Length = 47466

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    atttcaatttcaaaccaa 36
             ||||||||||||||||||
Sbjct: 44977 atttcaatttcaaaccaa 44960
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>emb|CT824639.4| Human DNA sequence from clone XX-HCC1954_10I14, complete sequence
          Length = 114515

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 71676 aatttcaaaccaataata 71659
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>gb|U22945.2|SOU22945 Debaryomyces occidentalis high affinity potassium transporter (HAK1)
            gene, complete cds
          Length = 5043

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   ttcaaaccaataataaaa 44
            ||||||||||||||||||
Sbjct: 4203 ttcaaaccaataataaaa 4220
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>gb|AE003466.2| Drosophila melanogaster chromosome 2R, section 73 of 73 of the complete
              sequence
          Length = 228008

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     caatttcaaaccaataat 40
              ||||||||||||||||||
Sbjct: 105906 caatttcaaaccaataat 105889
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>gb|AC116556.14| Mus musculus strain C57BL/6J chromosome 8 clone rp23-184i13, complete
             sequence
          Length = 239958

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    atatttcaatttcaaacc 34
             ||||||||||||||||||
Sbjct: 75001 atatttcaatttcaaacc 74984
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>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence
          Length = 140256

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 20   tttcaatttcaaaccaat 37
            ||||||||||||||||||
Sbjct: 1687 tttcaatttcaaaccaat 1670
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>gb|AC140919.2| Mus musculus BAC clone RP24-510L10 from 1, complete sequence
          Length = 159472

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    atatttcaatttcaaacc 34
             ||||||||||||||||||
Sbjct: 49716 atatttcaatttcaaacc 49699
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>emb|AL672074.19| Mouse DNA sequence from clone RP23-404I18 on chromosome X, complete
             sequence
          Length = 171593

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 3     cccacccaatgctcatatttca 24
             |||||||||| |||||||||||
Sbjct: 73155 cccacccaattctcatatttca 73134
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>gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, complete sequence
          Length = 219234

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     atgctcatatttcaattt 28
              ||||||||||||||||||
Sbjct: 215840 atgctcatatttcaattt 215823
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>gb|U00060.1|YSCH9332 Saccharomyces cerevisiae chromosome VIII cosmid 9332
          Length = 36176

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    aatttcaaaccaataata 41
             ||||||||||||||||||
Sbjct: 26828 aatttcaaaccaataata 26811
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 17      atatttcaatttcaaacc 34
               ||||||||||||||||||
Sbjct: 3055140 atatttcaatttcaaacc 3055157
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>gb|U82216.1|SPU82216 Schizosaccharomyces pombe fatty acid synthetase homolog (fas2)
           gene, partial cds
          Length = 854

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 411 ctcatatttcaatttcaa 394
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>gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome 12, complete sequence
          Length = 236362

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    atgctcatatttcaattt 28
             ||||||||||||||||||
Sbjct: 10129 atgctcatatttcaattt 10112
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>emb|AL359237.4|CNS05TEO Human chromosome 14 DNA sequence BAC R-1152H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162119

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    tatttcaatttcaaacca 35
             ||||||||||||||||||
Sbjct: 74678 tatttcaatttcaaacca 74695
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>emb|AJ242989.1|BFL242989 Branchiostoma floridae tip120 gene (partial), exons 1-3
          Length = 2647

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 23   caatttcaaaccaataataaaa 44
            |||||||||||||| |||||||
Sbjct: 2224 caatttcaaaccaaaaataaaa 2203
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>dbj|D83412.1|YSPLSD1A Schizosaccharomyces pombe fatty acid synthetase alpha subunit
           (lsd1+) gene, complete cds
          Length = 6232

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 14  ctcatatttcaatttcaa 31
           ||||||||||||||||||
Sbjct: 417 ctcatatttcaatttcaa 400


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 644,555
Number of Sequences: 3902068
Number of extensions: 644555
Number of successful extensions: 170094
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 169651
Number of HSP's gapped (non-prelim): 443
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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