ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.... 31 1.4
2VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1) 30 4.1
3GPMA_HAEDU (Q7VL28) 2,3-bisphosphoglycerate-dependent phosphogly... 29 5.4
4MYB86_ARATH (Q8LPH6) Transcription factor MYB86 (Myb-related pro... 29 5.4
5N4BP2_HUMAN (Q86UW6) NEDD4-binding protein 2 (EC 3.-.-.-) (N4BP2... 29 7.1
6YIJ6_YEAST (P40493) Hypothetical 39.4 kDa protein in SGA1-KTR7 i... 28 9.2

>HIS8_METMA (Q8PX17) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 368

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 173 PSRRFPVEPILVRKNQRFQTLARGLMFTVAHRLTILLCLSPN 298
           P+R    EP+ +R+NQ F      ++  V+ R  I+   SPN
Sbjct: 132 PARACGAEPVFIRRNQDFSLNPEKILEAVSPRTKIIFLCSPN 173



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>VTS1_YEAST (Q08831) Protein VTS1 (VTI1-2 suppressor protein 1)|
          Length = 523

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = +1

Query: 160 ETLATKSAISC*TNPGPQKP-AFPNTCQGLNVYCGS---QANYSVVFVTQSGGLQQIHIP 327
           +T+++ +A S   +P  Q P A  +T    ++Y  S     N  +   +QSG    I +P
Sbjct: 110 QTVSSTAAGSAIVSPMMQSPKALQSTLSSTSMYLDSFQRSPNNILGIPSQSGS---IPLP 166

Query: 328 QVLYSYLQGPTDKTSESISTNKTTDTVRLCLALSI 432
           Q   S  Q  + K   ++ TN + D  +LC  +S+
Sbjct: 167 QSRQSQQQSQSQKNDPNMGTNFSQDINQLCSWISM 201



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>GPMA_HAEDU (Q7VL28) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 227

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 119 FNTLYSFLAPQDTNSFHNSDQYIH 48
           ++TL   LAP D NS HN  +Y H
Sbjct: 116 YDTLPPLLAPSDPNSAHNDRRYAH 139



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>MYB86_ARATH (Q8LPH6) Transcription factor MYB86 (Myb-related protein 86)|
           (AtMYB86) (Myb homolog 4) (AtMyb4)
          Length = 352

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 199 NPGPQKPAFPNTCQGLNVYCGSQANYSVVFVTQSGGLQQIHIPQVLYSYLQGPTDKTSES 378
           +P   KP   N  Q LNV    Q   S   V  +G +  +H   ++ S  QGP    + +
Sbjct: 122 DPTTHKPLITNELQSLNVI--DQKLTSSEVVKSTGSINNLHDQSMVVSSQQGPWWFPANT 179

Query: 379 ISTNKTT 399
            +TN+ +
Sbjct: 180 TTTNQNS 186



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>N4BP2_HUMAN (Q86UW6) NEDD4-binding protein 2 (EC 3.-.-.-) (N4BP2)|
           (BCL-3-binding protein)
          Length = 1770

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -1

Query: 110 LYSFLAPQDTNSFHNSDQYIH 48
           +YSFL  QD NSF++S ++I+
Sbjct: 161 VYSFLPSQDVNSFNDSSEFIN 181



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>YIJ6_YEAST (P40493) Hypothetical 39.4 kDa protein in SGA1-KTR7 intergenic|
           region
          Length = 336

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 206 VRKNQRFQTLARGLMFTVAHRLTILLCLSPNPVVFNRSIYPKCFIHISRAQLTKLLNLFR 385
           V++NQ FQ L +G +       T++LC       F RSI  + +I      +T   N   
Sbjct: 51  VKRNQEFQKLNQGKVMPFEKDETLMLC-GEGDFSFARSIVEQNYIESDNLIITSYDNSVN 109

Query: 386 QTKL 397
           + KL
Sbjct: 110 ELKL 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,049,826
Number of Sequences: 219361
Number of extensions: 1369524
Number of successful extensions: 2765
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2764
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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