ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185139.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 3e-08
3gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic ... 68 3e-08
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AK058472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6gb|AC122260.3| Mus musculus BAC clone RP23-185M15 from 6, comple... 42 1.6
7gb|AC117441.3| Homo sapiens 3 BAC RP11-803L18 (Roswell Park Canc... 42 1.6
8gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, comple... 42 1.6
9gb|AC140385.3| Mus musculus BAC clone RP23-173G20 from chromosom... 42 1.6
10gb|AF196289.1|AF196289 Medicago sativa subsp. x varia Ser/Thr sp... 42 1.6
11gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL ... 40 6.4
12ref|XM_735046.1| Plasmodium chabaudi chabaudi RNA binding protei... 40 6.4
13ref|XM_672945.1| Plasmodium berghei strain ANKA RNA binding prot... 40 6.4
14gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
15gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, compl... 40 6.4
16emb|AL033388.1|SPBC887 S.pombe chromosome II cosmid c887 40 6.4
17gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complet... 40 6.4
18gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complet... 40 6.4
19gb|AY046590.1| Ancylostoma ceylanicum excretory/secretory protei... 40 6.4
20gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, compl... 40 6.4
21gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, com... 40 6.4
22ref|NM_001022406.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.4
23dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
24gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, comp... 40 6.4
25gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
26gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 6.4
27gb|AC161047.2| Mus musculus BAC clone RP24-189I12 from chromosom... 40 6.4
28dbj|AP006541.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.4
29dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.4
30emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chro... 40 6.4 
>ref|NM_185139.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1252

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                 
Query: 436 tgcctcaatttgatcaaaatctagatctacaaagctct 473
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 981 tgcctcaatttgatcaaaatctagatccacaaagctct 944
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 436      tgcctcaatttgatcaaaatctagatctacaaagctct 473
                ||||||||||||||||||||||||||| ||||||||||
Sbjct: 34369541 tgcctcaatttgatcaaaatctagatccacaaagctct 34369504
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>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete
             sequence
          Length = 115393

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 436   tgcctcaatttgatcaaaatctagatctacaaagctct 473
             ||||||||||||||||||||||||||| ||||||||||
Sbjct: 80153 tgcctcaatttgatcaaaatctagatccacaaagctct 80190
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                      
Query: 436      tgcctcaatttgatcaaaatctagatctacaaagctct 473
                ||||||||||||||||||||||||||| ||||||||||
Sbjct: 34460013 tgcctcaatttgatcaaaatctagatccacaaagctct 34459976
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>dbj|AK058472.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B11, full
            insert sequence
          Length = 1380

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 436  tgcctcaatttgatcaaaatctagatctacaaagctct 473
            ||||||||||||||||||||||||||| ||||||||||
Sbjct: 1026 tgcctcaatttgatcaaaatctagatccacaaagctct 989
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>gb|AC122260.3| Mus musculus BAC clone RP23-185M15 from 6, complete sequence
          Length = 203877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    tgtggctcacaggctaactat 276
              |||||||||||||||||||||
Sbjct: 129771 tgtggctcacaggctaactat 129791
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>gb|AC117441.3| Homo sapiens 3 BAC RP11-803L18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94888

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 275   attctgttgtgtttgtcacccaatc 299
             |||||||||| ||||||||||||||
Sbjct: 77788 attctgttgtttttgtcacccaatc 77812
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>gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, complete sequence
          Length = 162609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 30    atttgatttggttgaaaaatgaatg 54
             |||||||| ||||||||||||||||
Sbjct: 45349 atttgattaggttgaaaaatgaatg 45373
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>gb|AC140385.3| Mus musculus BAC clone RP23-173G20 from chromosome 6, complete sequence
          Length = 179564

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 256    tgtggctcacaggctaactat 276
              |||||||||||||||||||||
Sbjct: 175505 tgtggctcacaggctaactat 175485
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>gb|AF196289.1|AF196289 Medicago sativa subsp. x varia Ser/Thr specific protein phosphatase
           2A B regulatory subunit beta isoform mRNA, complete cds
          Length = 2194

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 32  ttgatttggttgaaaaatgaa 52
           |||||||||||||||||||||
Sbjct: 128 ttgatttggttgaaaaatgaa 148
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>gb|AC004763.1| Homo sapiens chromosome 5, P1 clone 854b11 (LBNL H44), complete
             sequence
          Length = 87050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    attatgaaatgaattagtat 85
             ||||||||||||||||||||
Sbjct: 17530 attatgaaatgaattagtat 17549
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>ref|XM_735046.1| Plasmodium chabaudi chabaudi RNA binding protein (PC000470.01.0)
           partial mRNA
          Length = 744

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 tcttcaacagatccatatac 325
           ||||||||||||||||||||
Sbjct: 635 tcttcaacagatccatatac 616
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>ref|XM_672945.1| Plasmodium berghei strain ANKA RNA binding protein (PB000862.03.0)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 306 tcttcaacagatccatatac 325
           ||||||||||||||||||||
Sbjct: 59  tcttcaacagatccatatac 40
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ttggttgaaaaatgaatgta 56
             ||||||||||||||||||||
Sbjct: 86259 ttggttgaaaaatgaatgta 86240
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>gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, complete sequence
          Length = 185247

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgaaaaatgaatgtactga 60
             ||||||||||||||||||||
Sbjct: 76727 ttgaaaaatgaatgtactga 76708
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>emb|AL033388.1|SPBC887 S.pombe chromosome II cosmid c887
          Length = 44308

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaacattgctctctacatga 137
             ||||||||||||||||||||
Sbjct: 25373 aaacattgctctctacatga 25392
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>gb|AC093656.4| Homo sapiens BAC clone RP11-440N4 from 4, complete sequence
          Length = 152326

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  gcttaatgtttactgtggct 262
            ||||||||||||||||||||
Sbjct: 1823 gcttaatgtttactgtggct 1842
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>gb|AC097519.2| Homo sapiens BAC clone RP11-549K7 from 4, complete sequence
          Length = 185556

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   gcttaatgtttactgtggct 262
             ||||||||||||||||||||
Sbjct: 68190 gcttaatgtttactgtggct 68209
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>gb|AY046590.1| Ancylostoma ceylanicum excretory/secretory protein 1 mRNA, partial
           cds
          Length = 419

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 ctatttcgacaaacaaaact 396
           ||||||||||||||||||||
Sbjct: 270 ctatttcgacaaacaaaact 289
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>gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, complete sequence
          Length = 150339

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     agtatcctgtggtgctaaaaagga 104
              |||||| |||||||||||||||||
Sbjct: 104603 agtatcttgtggtgctaaaaagga 104580
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>gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, complete sequence
          Length = 161025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ttgaaaaatgaatgtactga 60
              ||||||||||||||||||||
Sbjct: 122380 ttgaaaaatgaatgtactga 122361
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>ref|NM_001022406.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC887.12),
            partial mRNA
          Length = 3777

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  aaacattgctctctacatga 137
            ||||||||||||||||||||
Sbjct: 2919 aaacattgctctctacatga 2938
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      ttggttgaaaaatgaatgta 56
               ||||||||||||||||||||
Sbjct: 6302981 ttggttgaaaaatgaatgta 6302962
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>gb|AC002428.1|AC002428 Human BAC clone GS1-39E22 from 5q31, complete sequence
          Length = 143875

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    attatgaaatgaattagtat 85
             ||||||||||||||||||||
Sbjct: 77673 attatgaaatgaattagtat 77692
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      ttggttgaaaaatgaatgta 56
               ||||||||||||||||||||
Sbjct: 6369448 ttggttgaaaaatgaatgta 6369429
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tggtgctaaaaaggaataca 109
              ||||||||||||||||||||
Sbjct: 453340 tggtgctaaaaaggaataca 453321
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>gb|AC161047.2| Mus musculus BAC clone RP24-189I12 from chromosome 12, complete
             sequence
          Length = 153447

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   aaaaaccagcgtttccaaacactt 235
             ||||||||||||| ||||||||||
Sbjct: 50054 aaaaaccagcgttcccaaacactt 50077
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>dbj|AP006541.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjB06D23, BM0787,
             complete sequence
          Length = 102734

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ccatttgatttggttgaaaa 47
             ||||||||||||||||||||
Sbjct: 83029 ccatttgatttggttgaaaa 83010
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>dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18J10, TM0323a,
             complete sequence
          Length = 95559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ccatttgatttggttgaaaa 47
             ||||||||||||||||||||
Sbjct: 48144 ccatttgatttggttgaaaa 48125
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>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete
              sequence
          Length = 141025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tcagaattatgaaatgaatt 80
              ||||||||||||||||||||
Sbjct: 106096 tcagaattatgaaatgaatt 106077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,558,232
Number of Sequences: 3902068
Number of extensions: 4558232
Number of successful extensions: 85845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85696
Number of HSP's gapped (non-prelim): 149
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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