ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18h06 |
|---|---|
| Clone Library Name | barley_pub |
>FAD3C_SESIN (P48620) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 156 bits (394), Expect = 4e-38 Identities = 69/84 (82%), Positives = 78/84 (92%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG IN IHHDIGTHVIHHLFPQIPHYHL+EATEAAKPVLGKYY+EP+KSAPLPFHLL L Sbjct: 357 YGWINNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSAPLPFHLLGDL 416 Query: 339 SRSLKKDHYVSDTGDIVYYQSESE 268 +RSLK+DHYVSD GD+VYYQ++ + Sbjct: 417 TRSLKRDHYVSDVGDVVYYQTDPQ 440
>FAD3C_ARATH (P46310) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 446 Score = 153 bits (386), Expect = 3e-37 Identities = 65/82 (79%), Positives = 78/82 (95%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YGLIN IHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYY+EP+KS PLP HLL++L Sbjct: 353 YGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEIL 412 Query: 339 SRSLKKDHYVSDTGDIVYYQSE 274 ++S+K+DHYVSD G++VYY+++ Sbjct: 413 AKSIKEDHYVSDEGEVVYYKAD 434
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 153 bits (386), Expect = 3e-37 Identities = 69/89 (77%), Positives = 77/89 (86%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG IN IHHDIGTHVIHHLFPQIPHYHLVEATEAAKPV+GKYY+EP+KS PLP HLL L Sbjct: 367 YGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYREPKKSGPLPLHLLGSL 426 Query: 339 SRSLKKDHYVSDTGDIVYYQSESETSTSG 253 RS+K+DHYVSDTGD+VYYQ + + S G Sbjct: 427 VRSMKEDHYVSDTGDVVYYQKDPKLSGIG 455
>FAD3C_BRANA (P48618) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) (Fragment) Length = 404 Score = 152 bits (383), Expect = 7e-37 Identities = 65/82 (79%), Positives = 77/82 (93%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YGLIN IHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYY+EP+KS PLP HLL +L Sbjct: 311 YGLINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLGIL 370 Query: 339 SRSLKKDHYVSDTGDIVYYQSE 274 ++S+K+DH+VSD GD+VYY+++ Sbjct: 371 AKSIKEDHFVSDEGDVVYYEAD 392
>FAD3D_ARATH (P48622) Temperature-sensitive omega-3 fatty acid desaturase,| chloroplast precursor (EC 1.14.19.-) Length = 435 Score = 149 bits (375), Expect = 6e-36 Identities = 68/92 (73%), Positives = 79/92 (85%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG IN IHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYY+EP+ S PLP HLL L Sbjct: 346 YGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSL 405 Query: 339 SRSLKKDHYVSDTGDIVYYQSESETSTSGQRS 244 +S+K+DH+VSDTGD+VYY E++ +GQR+ Sbjct: 406 IKSMKQDHFVSDTGDVVYY--EADPKLNGQRT 435
>FAD3C_SOYBN (P48621) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 453 Score = 148 bits (374), Expect = 8e-36 Identities = 68/91 (74%), Positives = 79/91 (86%), Gaps = 1/91 (1%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKS-APLPFHLLQV 343 YG IN IHHDIGTHVIHHLFPQIPHYHLVEATEAAKPV GKYY+EP+KS APLPFHL+ Sbjct: 361 YGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYREPKKSAAPLPFHLIGE 420 Query: 342 LSRSLKKDHYVSDTGDIVYYQSESETSTSGQ 250 + RS K DH+VSDTGD+VYYQ++S+ + S + Sbjct: 421 IIRSFKTDHFVSDTGDVVYYQTDSKINGSSK 451
>FAD3E_SOYBN (P48625) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 380 Score = 148 bits (373), Expect = 1e-35 Identities = 64/83 (77%), Positives = 77/83 (92%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG I IHHDIGTHVIHHLFPQIPHYHLVEAT+AAKPVLG YY+EPE+SAPLPFHL++ L Sbjct: 290 YGWIYNIHHDIGTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYREPERSAPLPFHLIKYL 349 Query: 339 SRSLKKDHYVSDTGDIVYYQSES 271 +S+++DH+VSDTGD+VYYQ++S Sbjct: 350 IQSMRQDHFVSDTGDVVYYQTDS 372
>FAD3E_TOBAC (P48626) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 379 Score = 147 bits (372), Expect = 1e-35 Identities = 64/93 (68%), Positives = 80/93 (86%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YGL N IHHDIGTHVIHHLFPQIPHYHL EAT+AAKPVLGKYY+EP+KS P+PFHL++ L Sbjct: 287 YGLFNNIHHDIGTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDL 346 Query: 339 SRSLKKDHYVSDTGDIVYYQSESETSTSGQRSD 241 +RS+K+DHYVSD+G+IV+YQ++ S + + Sbjct: 347 TRSMKQDHYVSDSGEIVFYQTDPHIFRSAPKDE 379
>FAD3E_PHAAU (P32291) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Indole-3-acetic acid-induced protein ARG1) Length = 380 Score = 145 bits (367), Expect = 5e-35 Identities = 63/82 (76%), Positives = 75/82 (91%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG IN +HHDIGTHVIHHLFPQIPHYHLVEAT++AK VLGKYY+EP+KS PLPFHLL+ L Sbjct: 287 YGWINNVHHDIGTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYREPQKSGPLPFHLLKYL 346 Query: 339 SRSLKKDHYVSDTGDIVYYQSE 274 +S+ +DH+VSDTGDIVYYQ++ Sbjct: 347 LQSISQDHFVSDTGDIVYYQTD 368
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 136 bits (343), Expect = 3e-32 Identities = 58/84 (69%), Positives = 73/84 (86%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG+ N IHHDIGTHVIHHLFPQIPHYHLV+AT+AAK VLG+YY+EP+ S +P HL++ L Sbjct: 291 YGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESL 350 Query: 339 SRSLKKDHYVSDTGDIVYYQSESE 268 S+KKDHYVSDTGDIV+Y+++ + Sbjct: 351 VASIKKDHYVSDTGDIVFYETDPD 374
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 136 bits (342), Expect = 4e-32 Identities = 58/84 (69%), Positives = 72/84 (85%) Frame = -2 Query: 519 YGLINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVL 340 YG+ N IHHDIGTHVIHHLFPQIPHYHLV+AT AAK VLG+YY+EP+ S +P HL++ L Sbjct: 288 YGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYREPKTSGAIPIHLVESL 347 Query: 339 SRSLKKDHYVSDTGDIVYYQSESE 268 S+KKDHYVSDTGDIV+Y+++ + Sbjct: 348 VASIKKDHYVSDTGDIVFYETDPD 371
>FD6E2_SOYBN (P48631) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 2 (EC 1.14.19.-) Length = 383 Score = 67.0 bits (162), Expect = 3e-11 Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%) Frame = -2 Query: 519 YGLINKIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPE 379 YG++NK+ H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ E Sbjct: 301 YGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDE 348
>FD6E1_SOYBN (P48630) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 1 (EC 1.14.19.-) Length = 387 Score = 65.9 bits (159), Expect = 7e-11 Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%) Frame = -2 Query: 519 YGLINKI-HHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYK 388 YG++NK+ HH THV HHLF +PHYH +EAT A KP+LG+YY+ Sbjct: 305 YGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349
>FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 384 Score = 63.9 bits (154), Expect = 2e-10 Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 1/45 (2%) Frame = -2 Query: 519 YGLINKIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYK 388 YG++NK+ H+I THV HHLF +PHYH +E T+A KP+LG YY+ Sbjct: 302 YGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 1/45 (2%) Frame = -2 Query: 519 YGLINKIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYK 388 YG++NK+ H+I THV HHLF +PHY+ +EAT+A KP+LG YY+ Sbjct: 301 YGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345
>FAD12_MORIS (P59668) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 56.6 bits (135), Expect = 4e-08 Identities = 29/78 (37%), Positives = 44/78 (56%) Frame = -2 Query: 513 LINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVLSR 334 L + H + THV HHLF Q+P YH EAT K +LG+YY P ++ + R Sbjct: 328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWR 381 Query: 333 SLKKDHYVSDTGDIVYYQ 280 S ++ +V D GD+V+++ Sbjct: 382 SFRECRFVEDHGDVVFFK 399
>FAD12_MORAP (Q9Y8H5) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 56.6 bits (135), Expect = 4e-08 Identities = 29/78 (37%), Positives = 44/78 (56%) Frame = -2 Query: 513 LINKIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVLSR 334 L + H + THV HHLF Q+P YH EAT K +LG+YY P ++ + R Sbjct: 328 LDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWR 381 Query: 333 SLKKDHYVSDTGDIVYYQ 280 S ++ +V D GD+V+++ Sbjct: 382 SFRECRFVEDHGDVVFFK 399
>FAD12_CREAL (O81931) Delta(12) fatty acid dehydrogenase (EC 1.14.99.33)| (Crepenynate synthase) (Delta-12 fatty acid acetylenase) Length = 375 Score = 55.8 bits (133), Expect = 7e-08 Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Frame = -2 Query: 519 YGLINKIHHDIG-THVIHHLFPQIPHYHLVEATEAAKPVLGKYYK 388 +G +N + HD+ THV+HHLF IPHYH EA +A VLG +YK Sbjct: 294 FGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338
>FAD6C_SPIOL (P48629) Omega-6 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKEPEKSAPLPFHLLQVLSRSLKKDH 316 HDI H+ HH+ P+IP Y+L A ++ G+Y +P+ + L ++ K + Sbjct: 362 HDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIMTTCHIYDKDGN 421 Query: 315 YVS 307 YVS Sbjct: 422 YVS 424
>FAD6C_ARATH (P46312) Omega-6 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 448 Score = 38.5 bits (88), Expect = 0.011 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKY 394 HDI H+ HH+ P+IP Y+L A E+ + GKY Sbjct: 362 HDINVHIPHHISPRIPSYNLRAAHESIQENWGKY 395
>FAD6C_BRANA (P48627) Omega-6 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 443 Score = 37.4 bits (85), Expect = 0.025 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKY 394 HDI H+ HH+ P+IP Y+L A ++ + GKY Sbjct: 357 HDINVHIPHHISPRIPSYNLRAAHQSIQENWGKY 390
>FAD6C_SOYBN (P48628) Omega-6 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 424 Score = 37.0 bits (84), Expect = 0.033 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKE 385 HDI H+ HH+ P+IP Y+L A ++ + G+Y E Sbjct: 356 HDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNE 392
>DESA_SPIPL (Q54794) Fatty acid desaturase (EC 1.14.19.-) (Delta 12 desaturase)| Length = 351 Score = 32.0 bits (71), Expect = 1.0 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKY 394 HDI H+ HH+ IP Y+L T + + G+Y Sbjct: 281 HDINVHIPHHVTTAIPWYNLRTPTPVYRKIGGEY 314
>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 30.4 bits (67), Expect = 3.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 403 KHWFCCLSRLDKMIMRDLWEKMMNDMSANVM 495 KHWF CL+ DK I R W + N++ V+ Sbjct: 382 KHWFDCLNNKDKRIER--WHTLTNELPGAVL 410
>DESA_SYNY3 (P20388) Fatty acid desaturase (EC 1.14.19.-) (Delta 12 desaturase)| Length = 351 Score = 30.0 bits (66), Expect = 4.0 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -2 Query: 495 HDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYKE 385 HDI H+ HHL IP Y+L A + K G + E Sbjct: 282 HDINVHIPHHLSVAIPSYNLRLAHGSLKENWGPFLYE 318
>DOC2B_RAT (P70610) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 29.6 bits (65), Expect = 5.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 403 KHWFCCLSRLDKMIMRDLWEKMMNDMSANVM 495 KHWF CL DK I R W + N++ V+ Sbjct: 382 KHWFDCLKNKDKRIER--WHTLTNEIPGAVL 410
>SCR1_SCHPO (O14335) DNA-binding protein scr1| Length = 565 Score = 29.6 bits (65), Expect = 5.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +3 Query: 318 DPSSNSAIAPGVGGMGEEPTSLVLCSTCQALVLLPQSPRQDDNAG 452 DP++ SA P G + P+S+ L S +P P N G Sbjct: 460 DPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHKPASQSNVG 504
>Y2573_YERPE (Q8ZDJ2) Hypothetical UPF0192 protein YPO2573/y1143/YP1141 precursor| Length = 2004 Score = 29.3 bits (64), Expect = 6.8 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = -2 Query: 384 PEKSAPLPFHLLQVLSRSLKKDHYVSDTGDIVYYQSESETSTSGQRSD*DETLAYI 217 PEK + +P L+ + +L+ +HY + + + ES TS + D ETL I Sbjct: 1727 PEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQII 1782
>VE2_BPV5 (Q8BDG4) Regulatory protein E2| Length = 409 Score = 28.9 bits (63), Expect = 8.9 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 306 R*HSDPSSNSAIAPGVGGMGEEPTSLVLCSTCQALVLLPQSPRQDDNAGFVGKDDE*H 479 R H PSS + G+ G+ EEP + +P SP + + GF G+D H Sbjct: 191 RFHFPPSSRADTTDGLPGLQEEPRGGDGPTCSGPAPAIPDSPSRCLSRGFAGRDPGCH 248
>OR6C4_HUMAN (Q8NGE1) Olfactory receptor 6C4| Length = 309 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +2 Query: 23 RSRQALKRAEASSNCSFTMVIIH*LLHSCFMMYIHGLANPRSQE 154 R A +R +A S CS M++I SC MYI NP ++E Sbjct: 225 RIPSAQQRTKAFSTCSSHMIVISLSYGSCMFMYI----NPSAKE 264
>CAPD_BACAN (Q51693) Capsule biosynthesis protein capD| Length = 528 Score = 28.9 bits (63), Expect = 8.9 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = -2 Query: 423 EAAKPVLGKYYKEPEKSAPLPFH---LLQVLSRSLKKDHYVSDTGDIVYYQSESE 268 E KPV G Y +AP PF LLQ+L + KK+ Y D Y S+ E Sbjct: 247 EVRKPVKGNYMGYDVYTAPPPFSGVTLLQMLKLAEKKEVY-KDVDHTATYMSKME 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,207,629 Number of Sequences: 219361 Number of extensions: 1410564 Number of successful extensions: 3927 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3922 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
