>ref|XM_482926.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score =  208 bits (105), Expect = 9e-51
 Identities = 192/221 (86%)
 Strand = Plus / Minus

                                                                       
Query: 153 ctcctccaggaagtaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 212
           |||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 903 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 844

                                                                       
Query: 213 tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 272
           |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 843 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 784

                                                                       
Query: 273 cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccggcgg 332
            |||||| |||||||||||||||| |||||||| || ||||||||||| ||| ||| |||
Sbjct: 783 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 724

                                                    
Query: 333 gatcaccagcgggttgatgaacgggtggtcggtaccgtacc 373
             |   ||||||||||||||||||||||||| | |||||||
Sbjct: 723 agtggacagcgggttgatgaacgggtggtcgatcccgtacc 683



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 98  tgatgaaggagacgacggcgtccatctccctctcggccttgtcgcccc 145
           ||||||||||||||||||| || | ||||  ||| |||||||| ||||
Sbjct: 967 tgatgaaggagacgacggcatcaagctccgcctccgccttgtctcccc 920

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  208 bits (105), Expect = 9e-51
 Identities = 192/221 (86%)
 Strand = Plus / Plus

                                                                            
Query: 153      ctcctccaggaagtaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 212
                |||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 23401477 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 23401536

                                                                            
Query: 213      tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 272
                |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 23401537 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 23401596

                                                                            
Query: 273      cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccggcgg 332
                 |||||| |||||||||||||||| |||||||| || ||||||||||| ||| ||| |||
Sbjct: 23401597 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 23401656

                                                         
Query: 333      gatcaccagcgggttgatgaacgggtggtcggtaccgtacc 373
                  |   ||||||||||||||||||||||||| | |||||||
Sbjct: 23401657 agtggacagcgggttgatgaacgggtggtcgatcccgtacc 23401697



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 98       tgatgaaggagacgacggcgtccatctccctctcggccttgtcgcccc 145
                ||||||||||||||||||| || | ||||  ||| |||||||| ||||
Sbjct: 23401413 tgatgaaggagacgacggcatcaagctccgcctccgccttgtctcccc 23401460



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 187      gtctcgtacagcaccgcctc 206
                ||||||||||||||||||||
Sbjct: 23395938 gtctcgtacagcaccgcctc 23395957

>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score =  208 bits (105), Expect = 9e-51
 Identities = 192/221 (86%)
 Strand = Plus / Plus

                                                                         
Query: 153   ctcctccaggaagtaaacgtgcccctcgccgccggtctcgtacagcaccgcctcctcccc 212
             |||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 83314 ctcctcgaggaagtagacgtggccctcgccgccggtctcgtacagcgccgcctcctcccc 83373

                                                                         
Query: 213   tgtccacgcgctccccctcagcgcctccacgtaccgccggcccctgtcccgcatcgtgtc 272
             |  ||||||||||||||||||| |||||||||||  |||  | | ||| |||||||||||
Sbjct: 83374 ttcccacgcgctccccctcagcacctccacgtacatccgagctcggtcacgcatcgtgtc 83433

                                                                         
Query: 273   cagctccgccacggtgaccagtgctcgccggcaaccgagcgccgcccactccaccggcgg 332
              |||||| |||||||||||||||| |||||||| || ||||||||||| ||| ||| |||
Sbjct: 83434 gagctcccccacggtgaccagtgcccgccggcagccaagcgccgcccattcctccgccgg 83493

                                                      
Query: 333   gatcaccagcgggttgatgaacgggtggtcggtaccgtacc 373
               |   ||||||||||||||||||||||||| | |||||||
Sbjct: 83494 agtggacagcgggttgatgaacgggtggtcgatcccgtacc 83534



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 98    tgatgaaggagacgacggcgtccatctccctctcggccttgtcgcccc 145
             ||||||||||||||||||| || | ||||  ||| |||||||| ||||
Sbjct: 83250 tgatgaaggagacgacggcatcaagctccgcctccgccttgtctcccc 83297



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gtctcgtacagcaccgcctc 206
             ||||||||||||||||||||
Sbjct: 77775 gtctcgtacagcaccgcctc 77794

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 160      aggaagtaaacgtgcccctcgccgccggtctcgtac 195
                |||||||| |||||| |||||||| |||||||||||
Sbjct: 17413718 aggaagtagacgtgcacctcgccggcggtctcgtac 17413683

>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 160    aggaagtaaacgtgcccctcgccgccggtctcgtac 195
              |||||||| |||||| |||||||| |||||||||||
Sbjct: 137631 aggaagtagacgtgcacctcgccggcggtctcgtac 137596

>dbj|AK120686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168D07, full
            insert sequence
          Length = 2304

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 160  aggaagtaaacgtgcccctcgccgccggtctcgtac 195
            |||||||| |||||| |||||||| |||||||||||
Sbjct: 1247 aggaagtagacgtgcacctcgccggcggtctcgtac 1212

>dbj|AK105811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C02, full
            insert sequence
          Length = 1522

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 160  aggaagtaaacgtgcccctcgccgccggtctcgtac 195
            |||||||| |||||| |||||||| |||||||||||
Sbjct: 1251 aggaagtagacgtgcacctcgccggcggtctcgtac 1216

>dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full
            insert sequence
          Length = 4012

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 160  aggaagtaaacgtgcccctcgccgccggtctcgtac 195
            |||||||| |||||| |||||||| |||||||||||
Sbjct: 3569 aggaagtagacgtgcacctcgccggcggtctcgtac 3534

>dbj|AK063390.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H01, full
           insert sequence
          Length = 1576

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 160 aggaagtaaacgtgcccctcgccgccggtctcgtac 195
           |||||||| |||||| |||||||| |||||||||||
Sbjct: 120 aggaagtagacgtgcacctcgccggcggtctcgtac 155

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 323     ccaccggcgggatcaccagcg 343
               |||||||||||||||||||||
Sbjct: 2250197 ccaccggcgggatcaccagcg 2250177

>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   tgcccctcgccgccggtctcg 192
             |||||||||||||||||||||
Sbjct: 43326 tgcccctcgccgccggtctcg 43306

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 129     ctcggccttgtcgccccagcc 149
               |||||||||||||||||||||
Sbjct: 2716190 ctcggccttgtcgccccagcc 2716170

>ref|XM_482924.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 187 gtctcgtacagcaccgcctc 206
           ||||||||||||||||||||
Sbjct: 941 gtctcgtacagcaccgcctc 922

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 334     atcaccagcgggttgatgaacgggtggt 361
               ||||||||||||||||| | ||||||||
Sbjct: 2378197 atcaccagcgggttgatcaccgggtggt 2378224

>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence
          Length = 161757

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     tcagcagtgacagatcacagatgg 58
              |||||||||||||||| |||||||
Sbjct: 142622 tcagcagtgacagatcccagatgg 142599

>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence
          Length = 125467

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     ttccccacctagctccgcct 98
              ||||||||||||||||||||
Sbjct: 108903 ttccccacctagctccgcct 108922

>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gccttgtcgccccagccgga 152
             ||||||||||||||||||||
Sbjct: 53075 gccttgtcgccccagccgga 53056

>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence
          Length = 203937

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    tcagcagtgacagatcacagatgg 58
             |||||||||||||||| |||||||
Sbjct: 42006 tcagcagtgacagatcccagatgg 41983

>gb|AF267127.1| Lactobacillus delbrueckii subsp. bulgaricus HflX (hflX) gene, partial
            cds; EPS gene cluster, complete sequence; and unknown
            genes
          Length = 18023

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  gtccagctccgccacggtga 289
            ||||||||||||||||||||
Sbjct: 1352 gtccagctccgccacggtga 1371

>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence
          Length = 139728

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ttccccacctagctccgcct 98
             ||||||||||||||||||||
Sbjct: 30740 ttccccacctagctccgcct 30721

>gb|AC093849.2| Homo sapiens BAC clone RP11-489G11 from 4, complete sequence
          Length = 156195

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     tcagcagtgacagatcacagatgg 58
              |||||||||||||||| |||||||
Sbjct: 127870 tcagcagtgacagatcccagatgg 127847

>gb|U12970.1|HSU12970 Human endogenous retroviral element clone pCRTK1 nucleocapsid
           protein (gag) and protease/reverse transcriptase (pol)
           pseudogenes, partial cds
          Length = 1952

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 cgtccatctccctctcggcc 135
           ||||||||||||||||||||
Sbjct: 407 cgtccatctccctctcggcc 426

>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 133     gccttgtcgccccagccgga 152
               ||||||||||||||||||||
Sbjct: 2873354 gccttgtcgccccagccgga 2873335

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    tgtcgccccagccggactcc 156
              ||||||||||||||||||||
Sbjct: 292920 tgtcgccccagccggactcc 292939

>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    atcagcagtgacagatcaca 53
             ||||||||||||||||||||
Sbjct: 37214 atcagcagtgacagatcaca 37195

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 121     atctccctctcggccttgtcgccc 144
               ||||| ||||||||||||||||||
Sbjct: 3443365 atctcgctctcggccttgtcgccc 3443388

>dbj|AK109121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-C12, full
           insert sequence
          Length = 1204

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 gccggcccctgtcccgcatc 267
           ||||||||||||||||||||
Sbjct: 688 gccggcccctgtcccgcatc 707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,343,965
Number of Sequences: 3902068
Number of extensions: 2343965
Number of successful extensions: 48235
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47816
Number of HSP's gapped (non-prelim): 413
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)