ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregna... 29 3.2
2MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methyl... 28 5.4
3UQCR2_CANGA (Q6FSJ3) Ubiquinol-cytochrome-c reductase complex co... 27 9.2
4UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (E... 27 9.2

>PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregnancy-associated|
            plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma
            protein-E1) (PAPP-E)
          Length = 1791

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 347  VQALLRGRRRLTHPSPIILHCVAS 276
            VQ+++   RR  HP P+++HC+ S
Sbjct: 1709 VQSIVCTGRRQWHPDPVLVHCIQS 1732



to top

>MTNN_TREPA (P96122) MTA/SAH nucleosidase (EC 3.2.2.9) (5'-methylthioadenosine|
           nucleosidase) (S-adenosylhomocysteine nucleosidase)
          Length = 269

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 205 TSNARLVIAAPD*FSLCDRRPSWTDATQCRMMGDG 309
           T+N  L     + F LC R P WT+   C + G G
Sbjct: 120 TANTALRYLVREAFDLCTRDPEWTEGA-CALSGSG 153



to top

>UQCR2_CANGA (Q6FSJ3) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2)
          Length = 364

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 49  YQCTNMNQSVQLIRLSDISHSCSVSYTAKEYIFL 150
           +Q TN   +++L+R S++   C+ S   +EYI L
Sbjct: 54  FQNTNTKSALRLVRESELLGGCTKSTVDREYITL 87



to top

>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 32)
           (Ubiquitin-specific-processing protease 32)
           (Deubiquitinating enzyme 32) (NY-REN-60 antigen)
          Length = 1604

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 76  VQLIRLSD-ISHSCSVSYTAKEYIFLTEILKFRHPPKL 186
           V+L RL D    +C +SY   ++ F+ E+L    PPK+
Sbjct: 23  VELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKV 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,899,295
Number of Sequences: 219361
Number of extensions: 854242
Number of successful extensions: 1783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top