>RPN5_YEAST (Q12250) 26S proteasome regulatory subunit RPN5 (Proteasome|
           non-ATPase subunit 5)
          Length = 445

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 186 GTSNIHAWI*LIKHEKSHSSKKLIKVVLQLSSLRTNMLDLCTRSQTYTYWS 338
           G +N H W  L K    H+ + + +   +++ LR N L   T SQT TY S
Sbjct: 331 GEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYIS 381

>GOGA5_BRARE (Q7SXE4) Golgin subfamily A member 5 (Golgin-84)|
          Length = 760

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 219 IKHEKSHSSKKLIKVVLQLSSLRTNMLDLCTRSQT 323
           ++HEK    +++ K+  Q+ SLRT + DL T++ T
Sbjct: 501 LRHEKELQREEIQKLQAQIQSLRTEIQDLETQALT 535

>CHS2_SCHPO (O74756) Chitin synthase-like protein 2|
          Length = 926

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 240 SSKKLIKVVLQLSSLRTNMLDLCTRSQTYTYWSQSRFTLHTWNKLL 377
           S + L    + LSS+  N+  LC+RS++  + ++S      W K+L
Sbjct: 254 SDEDLASFAISLSSIMNNLKHLCSRSKSRVWGNES------WEKVL 293

>Y005_NPVAC (P41420) Hypothetical 12.4 kDa protein in CTL-LEF2 intergenic|
           region (ORF5)
          Length = 109

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 270 QLSSLRTNMLDLCTRSQT 323
           +L+SLR N+ DLCTRS T
Sbjct: 27  ELNSLRRNVHDLCTRSGT 44

>NUOM_BUCBP (Q89AT5) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain M) (NDH-1, chain M)
          Length = 508

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 269 QYYFNKFFGAVRFFVFNQLDPCMYITSSRLQV 174
           ++Y+N  F A +FF+++Q+   + + S+ + V
Sbjct: 165 KFYYNNIFSANKFFIYSQISGLVLLLSTLVLV 196

>RNC_WOLTR (Q5GTI3) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 243

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 85  ILTEALSHPCLNSINHKAQSHKLDR 159
           IL EAL+HP LN  N K Q    +R
Sbjct: 31  ILEEALTHPSLNKRNSKNQIENYER 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,214,793
Number of Sequences: 219361
Number of extensions: 950131
Number of successful extensions: 1961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)