ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chro... 42 1.4
2emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chro... 42 1.4
3gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell ... 42 1.4
4gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J... 42 1.4
5emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on ch... 42 1.4
6dbj|AP002795.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.4
7gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete se... 40 5.3
8gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, com... 40 5.3
9gb|AC102110.8| Mus musculus chromosome 1, clone RP23-122M2, comp... 40 5.3
10gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence 40 5.3
11gb|AC087807.2| Felis catus clone RP86-294B21, complete sequence 40 5.3
12emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on ch... 40 5.3
13emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chro... 40 5.3
14gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map... 40 5.3
15emb|AL133289.9| Human DNA sequence from clone RP4-804P4 on chrom... 40 5.3
16emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 5.3
17dbj|AK137140.1| Mus musculus adult male urinary bladder cDNA, RI... 40 5.3
18ref|XM_681444.1| PREDICTED: Danio rerio similar to serine-threon... 40 5.3
19ref|XM_691685.1| PREDICTED: Danio rerio similar to serine-threon... 40 5.3
20emb|BX548250.8| Zebrafish DNA sequence from clone DKEYP-104H9 in... 40 5.3
21gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, co... 40 5.3
22gb|AC174931.2| Mus musculus chromosome 1, clone RP24-259F5, comp... 40 5.3
23gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, comp... 40 5.3
24gb|M27044.1|RATFSHB1 Rat follicle stimluating hormone beta subun... 40 5.3

>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete
              sequence
          Length = 216921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    tgaattctatcaaccacaaag 136
              |||||||||||||||||||||
Sbjct: 208523 tgaattctatcaaccacaaag 208543



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>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 103582

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 348   ttcacacttcacacttggaacaaat 372
             ||||||||||||||| |||||||||
Sbjct: 17089 ttcacacttcacactaggaacaaat 17113



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>gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 131070

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tggaacaaattactgtaaaac 383
             |||||||||||||||||||||
Sbjct: 73237 tggaacaaattactgtaaaac 73257



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>gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J2, complete sequence
          Length = 129538

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   aaatctcacagctccaaaaaa 251
             |||||||||||||||||||||
Sbjct: 38367 aaatctcacagctccaaaaaa 38387



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>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete
              sequence
          Length = 205340

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    tgaattctatcaaccacaaag 136
              |||||||||||||||||||||
Sbjct: 194123 tgaattctatcaaccacaaag 194103



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>dbj|AP002795.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-715G18, complete
              sequence
          Length = 165240

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 62     tgacaacaaaatcagctacaaacat 86
              ||||||||||||||| |||||||||
Sbjct: 136555 tgacaacaaaatcagatacaaacat 136531



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>gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete sequence
          Length = 148548

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    caaattactgtaaaacacat 387
              ||||||||||||||||||||
Sbjct: 119918 caaattactgtaaaacacat 119937



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>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence
          Length = 202878

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   tatgcacaagatcacaaaca 323
             ||||||||||||||||||||
Sbjct: 38544 tatgcacaagatcacaaaca 38525



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>gb|AC102110.8| Mus musculus chromosome 1, clone RP23-122M2, complete sequence
          Length = 213732

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     actggcaccaaggaccaagg 59
              ||||||||||||||||||||
Sbjct: 201059 actggcaccaaggaccaagg 201040



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>gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence
          Length = 141881

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    ctatcaaccacaaagcacaa 141
              ||||||||||||||||||||
Sbjct: 139771 ctatcaaccacaaagcacaa 139752



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>gb|AC087807.2| Felis catus clone RP86-294B21, complete sequence
          Length = 121506

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ctatcaaccacaaagcacaa 141
             ||||||||||||||||||||
Sbjct: 39816 ctatcaaccacaaagcacaa 39797



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>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the
             3' end of the TCF7L2 gene for transcription factor 7-like
             2 (T-cell specific, HMG-box), complete sequence
          Length = 183815

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   tctatcaaccacaaagcaca 140
             ||||||||||||||||||||
Sbjct: 60459 tctatcaaccacaaagcaca 60478



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>emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chromosome 1, complete
             sequence
          Length = 75171

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   aaaatctcacagctccaaaa 249
             ||||||||||||||||||||
Sbjct: 10300 aaaatctcacagctccaaaa 10319



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>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence
          Length = 212485

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     actggcaccaaggaccaagg 59
              ||||||||||||||||||||
Sbjct: 100867 actggcaccaaggaccaagg 100886



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>emb|AL133289.9| Human DNA sequence from clone RP4-804P4 on chromosome 1q42.11-43
             Contains part of a novel gene (FLJ11383), complete
             sequence
          Length = 100515

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   caaccacaaagcacaaagcc 145
             ||||||||||||||||||||
Sbjct: 66082 caaccacaaagcacaaagcc 66101



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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     cacaagatcacaaacatata 327
               ||||||||||||||||||||
Sbjct: 2164117 cacaagatcacaaacatata 2164136



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>dbj|AK137140.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530005E07
           product:unclassifiable, full insert sequence
          Length = 2156

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  ctgaagcactgagccatcct 111
           ||||||||||||||||||||
Sbjct: 94  ctgaagcactgagccatcct 113



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>ref|XM_681444.1| PREDICTED: Danio rerio similar to serine-threonine protein kinase
            pim-2 isoform 1 (LOC558252), partial mRNA
          Length = 1811

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ggtatgacaacaaaatcagc 77
            ||||||||||||||||||||
Sbjct: 1268 ggtatgacaacaaaatcagc 1287



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>ref|XM_691685.1| PREDICTED: Danio rerio similar to serine-threonine protein kinase
            pim-2 isoform 1 (LOC568359), mRNA
          Length = 2336

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ggtatgacaacaaaatcagc 77
            ||||||||||||||||||||
Sbjct: 1268 ggtatgacaacaaaatcagc 1287



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>emb|BX548250.8| Zebrafish DNA sequence from clone DKEYP-104H9 in linkage group 14,
              complete sequence
          Length = 165603

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     ggtatgacaacaaaatcagc 77
              ||||||||||||||||||||
Sbjct: 136261 ggtatgacaacaaaatcagc 136242



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>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence
          Length = 147505

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    ctgaagcactgagccatcct 111
             ||||||||||||||||||||
Sbjct: 31282 ctgaagcactgagccatcct 31263



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>gb|AC174931.2| Mus musculus chromosome 1, clone RP24-259F5, complete sequence
          Length = 184558

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     actggcaccaaggaccaagg 59
              ||||||||||||||||||||
Sbjct: 104509 actggcaccaaggaccaagg 104528



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>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence
          Length = 188290

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tactggcaccaaggaccaag 58
             ||||||||||||||||||||
Sbjct: 22887 tactggcaccaaggaccaag 22906



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>gb|M27044.1|RATFSHB1 Rat follicle stimluating hormone beta subunit (FSH-beta) gene,
            segment 1
          Length = 1932

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 80   caaacattctgactgaagcactga 103
            |||||||||||||| |||||||||
Sbjct: 1608 caaacattctgactcaagcactga 1585


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,730,542
Number of Sequences: 3902068
Number of extensions: 3730542
Number of successful extensions: 73901
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73843
Number of HSP's gapped (non-prelim): 58
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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