Clone Name | rbart18g04 |
---|---|
Clone Library Name | barley_pub |
>emb|CR974584.10| Mouse DNA sequence from clone RP23-99K9 on chromosome 12, complete sequence Length = 216921 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 tgaattctatcaaccacaaag 136 ||||||||||||||||||||| Sbjct: 208523 tgaattctatcaaccacaaag 208543
>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 103582 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 348 ttcacacttcacacttggaacaaat 372 ||||||||||||||| ||||||||| Sbjct: 17089 ttcacacttcacactaggaacaaat 17113
>gb|AC005295.1| Homo sapiens X bins 3-5 PAC RPCI4-617A9 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 131070 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 363 tggaacaaattactgtaaaac 383 ||||||||||||||||||||| Sbjct: 73237 tggaacaaattactgtaaaac 73257
>gb|AC008854.3|AC008854 Homo sapiens chromosome 5 clone CTD-2177J2, complete sequence Length = 129538 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 231 aaatctcacagctccaaaaaa 251 ||||||||||||||||||||| Sbjct: 38367 aaatctcacagctccaaaaaa 38387
>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete sequence Length = 205340 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 tgaattctatcaaccacaaag 136 ||||||||||||||||||||| Sbjct: 194123 tgaattctatcaaccacaaag 194103
>dbj|AP002795.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-715G18, complete sequence Length = 165240 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 62 tgacaacaaaatcagctacaaacat 86 ||||||||||||||| ||||||||| Sbjct: 136555 tgacaacaaaatcagatacaaacat 136531
>gb|AC146874.3| Xenopus tropicalis clone CH216-82D17, complete sequence Length = 148548 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 caaattactgtaaaacacat 387 |||||||||||||||||||| Sbjct: 119918 caaattactgtaaaacacat 119937
>gb|AC120867.10| Mus musculus chromosome 5, clone RP23-91O14, complete sequence Length = 202878 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tatgcacaagatcacaaaca 323 |||||||||||||||||||| Sbjct: 38544 tatgcacaagatcacaaaca 38525
>gb|AC102110.8| Mus musculus chromosome 1, clone RP23-122M2, complete sequence Length = 213732 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 actggcaccaaggaccaagg 59 |||||||||||||||||||| Sbjct: 201059 actggcaccaaggaccaagg 201040
>gb|AC087421.2| Felis catus clone RP86-177C24, complete sequence Length = 141881 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctatcaaccacaaagcacaa 141 |||||||||||||||||||| Sbjct: 139771 ctatcaaccacaaagcacaa 139752
>gb|AC087807.2| Felis catus clone RP86-294B21, complete sequence Length = 121506 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctatcaaccacaaagcacaa 141 |||||||||||||||||||| Sbjct: 39816 ctatcaaccacaaagcacaa 39797
>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the 3' end of the TCF7L2 gene for transcription factor 7-like 2 (T-cell specific, HMG-box), complete sequence Length = 183815 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 tctatcaaccacaaagcaca 140 |||||||||||||||||||| Sbjct: 60459 tctatcaaccacaaagcaca 60478
>emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chromosome 1, complete sequence Length = 75171 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 aaaatctcacagctccaaaa 249 |||||||||||||||||||| Sbjct: 10300 aaaatctcacagctccaaaa 10319
>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence Length = 212485 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 actggcaccaaggaccaagg 59 |||||||||||||||||||| Sbjct: 100867 actggcaccaaggaccaagg 100886
>emb|AL133289.9| Human DNA sequence from clone RP4-804P4 on chromosome 1q42.11-43 Contains part of a novel gene (FLJ11383), complete sequence Length = 100515 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 caaccacaaagcacaaagcc 145 |||||||||||||||||||| Sbjct: 66082 caaccacaaagcacaaagcc 66101
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces hansenii Length = 2336804 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cacaagatcacaaacatata 327 |||||||||||||||||||| Sbjct: 2164117 cacaagatcacaaacatata 2164136
>dbj|AK137140.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530005E07 product:unclassifiable, full insert sequence Length = 2156 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctgaagcactgagccatcct 111 |||||||||||||||||||| Sbjct: 94 ctgaagcactgagccatcct 113
>ref|XM_681444.1| PREDICTED: Danio rerio similar to serine-threonine protein kinase pim-2 isoform 1 (LOC558252), partial mRNA Length = 1811 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggtatgacaacaaaatcagc 77 |||||||||||||||||||| Sbjct: 1268 ggtatgacaacaaaatcagc 1287
>ref|XM_691685.1| PREDICTED: Danio rerio similar to serine-threonine protein kinase pim-2 isoform 1 (LOC568359), mRNA Length = 2336 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ggtatgacaacaaaatcagc 77 |||||||||||||||||||| Sbjct: 1268 ggtatgacaacaaaatcagc 1287
>emb|BX548250.8| Zebrafish DNA sequence from clone DKEYP-104H9 in linkage group 14, complete sequence Length = 165603 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 ggtatgacaacaaaatcagc 77 |||||||||||||||||||| Sbjct: 136261 ggtatgacaacaaaatcagc 136242
>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence Length = 147505 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 ctgaagcactgagccatcct 111 |||||||||||||||||||| Sbjct: 31282 ctgaagcactgagccatcct 31263
>gb|AC174931.2| Mus musculus chromosome 1, clone RP24-259F5, complete sequence Length = 184558 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 actggcaccaaggaccaagg 59 |||||||||||||||||||| Sbjct: 104509 actggcaccaaggaccaagg 104528
>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence Length = 188290 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 tactggcaccaaggaccaag 58 |||||||||||||||||||| Sbjct: 22887 tactggcaccaaggaccaag 22906
>gb|M27044.1|RATFSHB1 Rat follicle stimluating hormone beta subunit (FSH-beta) gene, segment 1 Length = 1932 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 caaacattctgactgaagcactga 103 |||||||||||||| ||||||||| Sbjct: 1608 caaacattctgactcaagcactga 1585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,730,542 Number of Sequences: 3902068 Number of extensions: 3730542 Number of successful extensions: 73901 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73843 Number of HSP's gapped (non-prelim): 58 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)