ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18g01 |
|---|---|
| Clone Library Name | barley_pub |
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +3 Query: 291 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 398 G H +RFL G L+PLP + +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 291 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 398 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 291 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 398 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>COBD_LEPIN (Q8EXQ8) Cobalamin biosynthesis protein cobD| Length = 315 Score = 29.3 bits (64), Expect = 5.0 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 441 INAMLKHNRNMYDFLGWAAANLEWKLLHK-VAKDKEGLLQREIVRGAFDGSLFERLQESK 265 I M+ H++ +YD L L K + K VA+D E L + EI+R + S E L + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVE-STAENLVDGI 152 Query: 264 KSP 256 +P Sbjct: 153 TTP 155
>COBD_LEPIC (Q75FR2) Cobalamin biosynthesis protein cobD| Length = 315 Score = 29.3 bits (64), Expect = 5.0 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 441 INAMLKHNRNMYDFLGWAAANLEWKLLHK-VAKDKEGLLQREIVRGAFDGSLFERLQESK 265 I M+ H++ +YD L L K + K VA+D E L + EI+R + S E L + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVE-STAENLVDGI 152 Query: 264 KSP 256 +P Sbjct: 153 TTP 155
>CS015_MACFA (Q4R6B2) Protein C19orf15 homolog precursor| Length = 1159 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 434 PCLNTTVICMISWAGPQPTSNGSCCTR 354 PC+ V C +SW P P NGS TR Sbjct: 158 PCIAEEV-CSMSWYTPMPIKNGSVVTR 183
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 28.9 bits (63), Expect = 6.6 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +3 Query: 129 TGRALLIRRTHNSNYREAFQISSADVS*TTLGLDCARLTAAF--REISCSPAGARTGCHR 302 TG+ L+ R H S+ R + + L+CA L + E+ GA TG + Sbjct: 173 TGKELVARAIHASSARSEKPLVT---------LNCAALNESLLESELFGHEKGAFTGADK 223 Query: 303 RRPSRFLAAKG 335 RR RF+ A G Sbjct: 224 RREGRFVEADG 234
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 28.9 bits (63), Expect = 6.6 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +3 Query: 129 TGRALLIRRTHNSNYREAFQISSADVS*TTLGLDCARLTAAF--REISCSPAGARTGCHR 302 TG+ L+ R H S+ R + + L+CA L + E+ GA TG + Sbjct: 173 TGKELVARAIHASSARSEKPLVT---------LNCAALNESLLESELFGHEKGAFTGADK 223 Query: 303 RRPSRFLAAKG 335 RR RF+ A G Sbjct: 224 RREGRFVEADG 234
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -1 Query: 459 ALSEDEINAMLKHNRNMYDFLG-WAAANLEWKLLHKVAKDKEGLLQREIVRGAFDGSLFE 283 A+S EI+A + F+G + A L W +++VAK ++G LQ IV+ D ++ E Sbjct: 333 AISRGEIDAYTQ-------FVGIYGAKGLAWVKVNEVAKGRDG-LQSPIVKNLHDAAITE 384 Query: 282 RLQES 268 L+ + Sbjct: 385 ILKRT 389
>SAP1_YEAST (P39955) Protein SAP1| Length = 897 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 99 RQMKMFRPP*TGRALLIRRTHNSNYREAFQISSADVS*TTLG 224 R M +F PP TG+ +L R ++ F IS++ ++ LG Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLG 680
>EIL2_ARATH (O23115) ETHYLENE-INSENSITIVE3-like 2 protein| Length = 518 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = +1 Query: 34 TKYPVHLLCATNNSTNSSSKYEDR*KCLGRRKRAEHFLFDVHTTQTT 174 T Y V L+ T+ + ++E+ C+ +RK E F +H T T Sbjct: 336 TDYDVELIGGTHRTNQQYPEFENNYNCVYKRKFEEDFGMPMHPTLLT 382
>UL17_HHV11 (P10201) Protein UL17| Length = 703 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 275 CRRSNRLPSKAPLTISRCKRPSLSFATLCSNFHSRL 382 CR +PS AP + P S+A LC F+ RL Sbjct: 622 CRFMEAVPSTAPRRVCEQYLPGESYAYLCLGFNRRL 657
>PSPF_ECOLI (P37344) Psp operon transcriptional activator| Length = 325 Score = 28.5 bits (62), Expect = 8.6 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Frame = +3 Query: 129 TGRALLIRRTH--NSNYREAFQISSADVS*TTLGLDCARLTAAF--REISCSPAGARTGC 296 TG+ L+ R H +S ++ F + L+CA L E+ AGA TG Sbjct: 40 TGKELIASRLHYLSSRWQGPF-----------ISLNCAALNENLLDSELFGHEAGAFTGA 88 Query: 297 HRRRPSRFLAAKG 335 +R P RF A G Sbjct: 89 QKRHPGRFERADG 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,367,860 Number of Sequences: 219361 Number of extensions: 1440975 Number of successful extensions: 4057 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3968 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4057 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
