ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18f11 |
|---|---|
| Clone Library Name | barley_pub |
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 33.5 bits (75), Expect = 0.34 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +3 Query: 111 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 284 H K+DHT + +I +L L F + + DPS I+ T TT + S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 285 C 287 C Sbjct: 309 C 309
>MATK_LEPPR (Q8MEX8) Maturase K (Intron maturase)| Length = 514 Score = 32.0 bits (71), Expect = 0.98 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 189 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 365 HPL+ E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HPLEEXNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 366 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 458 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>STP2_HUMAN (Q05952) Nuclear transition protein 2 (TP-2) (TP2)| Length = 138 Score = 30.8 bits (68), Expect = 2.2 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +2 Query: 344 AHRGSRDPHCLPHPASHHSAKGCP*IRPSCSQRRATSTSPHCQKQGCLVHHFP 502 +HRGSR PASH + G SQ TS P K+ HH P Sbjct: 40 SHRGSRSQSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSP 92
>MT12_MYTED (P80247) Metallothionein 10-II (MT-10-II)| Length = 72 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 388 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 299 CR G A SGA CS VV GSC+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGSCECG 54
>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +2 Query: 344 AHRGSRDPHCLPHPASHHSAKGCP*IRPSCSQRRATSTSPHCQKQGCLVHHFP 502 +HRGSR PASH + G SQ TS P K+ HH P Sbjct: 40 SHRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSP 92
>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +2 Query: 344 AHRGSRDPHCLPHPASHHSAKGCP*IRPSCSQRRATSTSPHCQKQGCLVHHFP 502 +HRGSR PASH + G SQ TS P K+ HH P Sbjct: 40 SHRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMNSHHSP 92
>MATK_DIOSP (Q8MEY1) Maturase K (Intron maturase)| Length = 514 Score = 30.0 bits (66), Expect = 3.7 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 189 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 365 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSILPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 366 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 458 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MATK_ENCAL (Q8MEY0) Maturase K (Intron maturase)| Length = 514 Score = 29.6 bits (65), Expect = 4.9 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 189 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 365 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 366 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 458 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 29.6 bits (65), Expect = 4.9 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -3 Query: 262 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 83 D +V A KE S +F + + DC+L+A+G++ +C++ V +I G + Sbjct: 6 DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65 Query: 82 L 80 + Sbjct: 66 I 66
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 313 SCQCGLRTAQMSLACGQDEELVVHVAK 233 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 313 SCQCGLRTAQMSLACGQDEELVVHVAK 233 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 313 SCQCGLRTAQMSLACGQDEELVVHVAK 233 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>MATK_DIOED (Q8MEY2) Maturase K (Intron maturase)| Length = 505 Score = 29.6 bits (65), Expect = 4.9 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Frame = +3 Query: 189 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 365 H L+ + E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HSLERMNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 366 PTACPILHRTIQQKVVHRSVRAALNVGQRVL 458 + +LH HR++ + N+ Q +L Sbjct: 175 HSLRSVLHE-------HRNLIISSNLDQLIL 198
>RCEM_RHOCA (P11847) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 306 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 217 PILLSSWPHAPPILHLAHMQGTFVLSADH 303 PIL+ SW APP +H+ T S DH Sbjct: 163 PILMGSWSVAPPYGIFSHLDWTNQFSLDH 191
>GPR78_HUMAN (Q96P69) Probable G-protein coupled receptor 78| Length = 363 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 397 MVRCRMGQAVGISGASMSCSWQLVVIDGSCQCGLR 293 ++ C GQ++ SGA++ CSW L C LR Sbjct: 126 LLGCAWGQSLAFSGAALGCSW-LGYSSAFASCSLR 159
>KRA92_HUMAN (Q9BYQ4) Keratin-associated protein 9-2 (Keratin-associated protein| 9.2) (Ultrahigh sulfur keratin-associated protein 9.2) Length = 174 Score = 28.9 bits (63), Expect = 8.3 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Frame = +2 Query: 266 PTCKGHLCCPQTTLTRTINNHQ--LP*TAHRGSRDPH--CLPHPASHHSAKGC--P*IRP 427 PTC G CC QT+ + P R P CLP + C P RP Sbjct: 88 PTCCGSSCCGQTSCGSSCGQSSSCAPVYCRRTCYYPTTVCLPGCLNQSCGSNCCQPCCRP 147 Query: 428 SCSQR---RATSTSPHCQKQGC 484 +C + R T P C C Sbjct: 148 ACCETTCCRTTCFQPTCVSSCC 169
>MT10A_MYTED (P80246) Metallothionein 10-Ia (MT-10-Ia)| Length = 72 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -3 Query: 388 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 299 CR G A SGA CS VV G C+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGRCECG 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,836,794 Number of Sequences: 219361 Number of extensions: 1770133 Number of successful extensions: 4704 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4695 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
