ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full... 502 e-139
2gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ... 62 2e-06
3gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative E... 62 2e-06
4gb|AF364176.1| Oryza sativa putative EREBP-type transcription fa... 62 2e-06
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
6dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
8dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
9dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
10gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, comple... 46 0.11
11gb|AY105702.1| Zea mays PCO125609 mRNA sequence 46 0.11
12emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-6... 46 0.11
13emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-7... 46 0.11
14gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 spl... 46 0.11
15gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp... 44 0.44
16gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, com... 44 0.44
17gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, co... 42 1.7
18gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 42 1.7
19emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on ch... 42 1.7
20gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 1.7
21emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 42 1.7
22gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, com... 40 6.9
23gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 6.9
24emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chro... 40 6.9
25gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom... 40 6.9
26gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, com... 40 6.9 
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA
            sequence
          Length = 1612

 Score =  502 bits (253), Expect = e-139
 Identities = 404/451 (89%), Gaps = 15/451 (3%)
 Strand = Plus / Minus

                                                                        
Query: 61   tttattaaactccagcctccaacatgcacccaatcattatatagagacgacatacaacaa 120
            ||||||||||||||| |||||||||||||||||||||     |||| ||| |||||||||
Sbjct: 1554 tttattaaactccagtctccaacatgcacccaatcat-----agaggcgatatacaacaa 1500

                                                                        
Query: 121  cagaata----taaacatgaccatacggttcccactgctagcagcatacagtctttagca 176
            || ||||    |||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 1499 caaaatacttataaacatgac-atacggttcc-actgctagcagcatacagtctttagca 1442

                                                                        
Query: 177  taactatggtttcatccgctacagaacgtagcagaagccaccgatccttctttcatcttg 236
            || ||| ||||| |||||||||  | | || |||| || ||| |||||||    ||| ||
Sbjct: 1441 tagctagggtttgatccgctaccaagcataacagatgcaacctatccttc----atcctg 1386

                                                                        
Query: 237  gccacatgcaccaccaattcttcatcttgcccacatgcaagggacatttgtgctgtccgc 296
            |||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 1385 gccacatgcaccaccacttcttcatcttggccacatgcaagggacatttgtgctatccgc 1326

                                                                        
Query: 297  agaccacattgacaagaaccatcaataaccaccagctgccatgaacagctcatcgaggct 356
            |||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 1325 agaccacactgacaagaaccatcaataaccaccagccgccatgaagagctcatcaaggct 1266

                                                                        
Query: 357  ccagagatccccactgcttgccccatcctgcatcgcaccattcagcaaaaggttgtccat 416
            |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 1265 ccagagatccccactgcttgccccgtcctgcatcgcaccattcagcagaaggctgtccat 1206

                                                                        
Query: 417  agatccgtccgagctgctctcaacgtagggcaacgagtacttcacctcattgtcaaaagc 476
             |||||||||||||||||||| || || |||||||||||||||| ||||| |||||||||
Sbjct: 1205 cgatccgtccgagctgctctcgacataaggcaacgagtacttcatctcatggtcaaaagc 1146

                                           
Query: 477  agggatgtcttgtgcaccatttccctgaggc 507
            |||||||||||||||||||||||||||||||
Sbjct: 1145 agggatgtcttgtgcaccatttccctgaggc 1115
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>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional
            factor 1 (BIERF1) mRNA, complete cds
          Length = 1613

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1152

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1151 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1097
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>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription
            factor (EREBP) mRNA, complete cds
          Length = 1445

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1129

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1128 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1074
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>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete
            cds
          Length = 1584

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1203

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1202 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1148
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                            
Query: 326      caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
                ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 15907527

                                                                       
Query: 386      gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
                |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 15907526 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 15907472
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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                         
Query: 326   caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
             ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 70653

                                                                    
Query: 386   gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
             |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 70652 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 70598
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>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full
            insert sequence
          Length = 1603

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1233

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1232 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1178
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>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full
            insert sequence
          Length = 1596

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172
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>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full
            insert sequence
          Length = 1596

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                        
Query: 326  caccagctgccatgaacagctcatcgaggctccagagatccccactgcttgccccatcct 385
            ||||||||||||||| ||||||||| ||||||||||   || |  |||||||||| || |
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccagatgccctcgttgcttgccccgtctt 1227

                                                                   
Query: 386  gcatcgcaccattcagcaaaaggttgtccatagatccgtccgagctgctctcaac 440
            |  | ||| ||||  ||| |||||||||||| ||| | || ||||||||||||||
Sbjct: 1226 gtgtagcatcattttgcagaaggttgtccattgattcatctgagctgctctcaac 1172
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>gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence
          Length = 143340

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 263   ttgcccacatgcaagggacattt 285
             |||||||||||||||||||||||
Sbjct: 58727 ttgcccacatgcaagggacattt 58749
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>gb|AY105702.1| Zea mays PCO125609 mRNA sequence
          Length = 1889

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 336  catgaacagctcatcgaggctccagagatccccactgcttgccccatcctg 386
            ||||| |||||| ||||||||||||| ||||||   ||| |||||||||||
Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcctg 1460
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>emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170273

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 263  ttgcccacatgcaagggacattt 285
            |||||||||||||||||||||||
Sbjct: 4156 ttgcccacatgcaagggacattt 4134
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>emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176257

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 263    ttgcccacatgcaagggacattt 285
              |||||||||||||||||||||||
Sbjct: 148513 ttgcccacatgcaagggacattt 148491
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>gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 splice variant mRNA, partial
           cds
          Length = 659

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 263 ttgcccacatgcaagggacattt 285
           |||||||||||||||||||||||
Sbjct: 262 ttgcccacatgcaagggacattt 240
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>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 195    ctacagaacgtagcagaagcca 216
              ||||||||||||||||||||||
Sbjct: 119408 ctacagaacgtagcagaagcca 119429
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>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence
          Length = 192043

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 195    ctacagaacgtagcagaagcca 216
              ||||||||||||||||||||||
Sbjct: 145261 ctacagaacgtagcagaagcca 145240
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>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence
          Length = 166309

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 222  ccttctttcatcttggccaca 242
            |||||||||||||||||||||
Sbjct: 7431 ccttctttcatcttggccaca 7451
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
              Sequence, complete sequence
          Length = 194881

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 328    ccagctgccatgaacagctca 348
              |||||||||||||||||||||
Sbjct: 180890 ccagctgccatgaacagctca 180910
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>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete
             sequence
          Length = 167874

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 313   aaccatcaataaccaccagct 333
             |||||||||||||||||||||
Sbjct: 58533 aaccatcaataaccaccagct 58513
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>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete
             sequence
          Length = 175217

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 328   ccagctgccatgaacagctca 348
             |||||||||||||||||||||
Sbjct: 64305 ccagctgccatgaacagctca 64325
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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 461    cctcattgtcaaaagcaggga 481
              |||||||||||||||||||||
Sbjct: 204072 cctcattgtcaaaagcaggga 204092
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>gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, complete sequence
          Length = 158782

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   gccacatgcaccaccaattc 256
             ||||||||||||||||||||
Sbjct: 87170 gccacatgcaccaccaattc 87151
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   caccagctgccatgaacagc 345
             ||||||||||||||||||||
Sbjct: 38373 caccagctgccatgaacagc 38354
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>emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete
              sequence
          Length = 172896

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    tccttctttcatcttggcca 240
              ||||||||||||||||||||
Sbjct: 126860 tccttctttcatcttggcca 126841
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>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    caccagctgccatgaacagc 345
              ||||||||||||||||||||
Sbjct: 171209 caccagctgccatgaacagc 171190
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>gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, complete sequence
          Length = 109222

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tccttctttcatcttggcca 240
              ||||||||||||||||||||
Sbjct: 104840 tccttctttcatcttggcca 104859


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,490,769
Number of Sequences: 3902068
Number of extensions: 4490769
Number of successful extensions: 69628
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69564
Number of HSP's gapped (non-prelim): 61
length of query: 507
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 485
effective length of database: 17,147,199,772
effective search space: 8316391889420
effective search space used: 8316391889420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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