ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1 29 5.9
2DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protei... 28 7.7

>CPRF1_PETCR (Q99089) Common plant regulatory factor CPRF-1|
          Length = 411

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 17  LYNQNGAVIHVQYRAEAEHALNQPLPADHQKKNGTGRTTNASSYIKN 157
           L N N  ++ V   A+AE A +  L  +++KK  T  T N  S + N
Sbjct: 325 LTNDNSRLLEVMKNAQAERAADVGLGNNNEKKASTLSTANLLSRVDN 371



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>DCR1_DROME (Q9VCU9) Endoribonuclease Dcr-1 (EC 3.1.26.-) (Protein dicer-1)|
          Length = 2249

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 1   TQNPLSI*PKWSGNSRTVQSGSRTCTKPTTTRRSSKEKRDGTDNQCIIVH 150
           T  P    PK S  + T Q  +R   +   TRR  ++  DG+D  C +++
Sbjct: 452 TPTPAHAKPKPSSGANTAQPRTR---RRVYTRRHHRDHNDGSDTLCALIY 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,731,077
Number of Sequences: 219361
Number of extensions: 654772
Number of successful extensions: 1812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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