ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18f06 |
|---|---|
| Clone Library Name | barley_pub |
>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)| Length = 577 Score = 33.5 bits (75), Expect = 0.34 Identities = 31/118 (26%), Positives = 50/118 (42%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHRXXXXXXXXXXX*VD 228 PP + APR +S +P + + SP A +PSP +G NG + Sbjct: 31 PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG------PSSSSSSSLAN 84 Query: 227 QILPVFTQWECITW*ESRVDQILPTVTKLSKILNKDLPVRV*FYRVLYFGI*YSSQTI 54 Q LP C S++ + L T+ + ++ ++ RV R L G+ S+ TI Sbjct: 85 QQLPP----ACGARQLSKLKRFLTTLQQFGNDISPEIGERV---RTLVLGLVNSTLTI 135
>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty| one protein) (Cyclin D-related protein) (Zinc finger MYND domain-containing protein 2) Length = 604 Score = 33.5 bits (75), Expect = 0.34 Identities = 31/118 (26%), Positives = 50/118 (42%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHRXXXXXXXXXXX*VD 228 PP + APR +S +P + + SP A +PSP +G NG + Sbjct: 58 PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG------PSSSSSSSLAN 111 Query: 227 QILPVFTQWECITW*ESRVDQILPTVTKLSKILNKDLPVRV*FYRVLYFGI*YSSQTI 54 Q LP C S++ + L T+ + ++ ++ RV R L G+ S+ TI Sbjct: 112 QQLPP----ACGARQLSKLKRFLTTLQQFGNDISPEIGERV---RTLVLGLVNSTLTI 162
>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6| Length = 545 Score = 32.3 bits (72), Expect = 0.77 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 294 PPG PAP N P P N P+++GR P P D Sbjct: 343 PPGGPPPAPHVN---PAFFPPPGNNMPSSDGRGPPPGD 377
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 32.3 bits (72), Expect = 0.77 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 410 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGR 312 TPPG + P PR +SR P ++PA +GR Sbjct: 135 TPPGQQRPHPRSHSREPRAERKCPRIAPADSGR 167
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 32.0 bits (71), Expect = 1.0 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -2 Query: 410 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSP 300 TPPG + P PR SR P M+PA +G P Sbjct: 135 TPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDP 171
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Frame = -2 Query: 398 SRSPAPRENSRSPMKAD---SPNNMSPAANGRSPSP 300 +RSP+PR S SP D SP +P+ R PSP Sbjct: 17 TRSPSPRTQSPSPRDEDGSRSPGERTPSPPSRDPSP 52 Score = 30.4 bits (67), Expect = 2.9 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 404 PGSRSPAPREN--SRSPMKADSPNNMSPAAN-GRSPSPR 297 P SRSP PR SR +++ SP SPA RS SPR Sbjct: 81 PRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPR 119 Score = 29.6 bits (65), Expect = 5.0 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -2 Query: 404 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 270 P +RSP PR +SR SP G+ P PR + G++R Sbjct: 118 PRARSPPPRRHSR-----------SPPLRGQPPPPRHRDAGGDYR 151 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 404 PGSRSPAPRENSRSPMKADSPNNMSPA-ANGRSPSPRD 294 PG R+P+P SP ++ SP+ RS SPRD Sbjct: 38 PGERTPSPPSRDPSPYRSPGERTPSPSPRRDRSLSPRD 75
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 31.6 bits (70), Expect = 1.3 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -2 Query: 398 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 297 SRSP + + RSP K+ S + P + RSPSPR Sbjct: 233 SRSPKAKSSRRSPAKSTS-RSPGPRSKSRSPSPR 265
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 31.2 bits (69), Expect = 1.7 Identities = 17/36 (47%), Positives = 19/36 (52%) Frame = -2 Query: 410 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPS 303 TPPG +P P S +P ADSP SP A PS Sbjct: 475 TPPGPATPGPVGASAAP-TADSPLTASPPATAPGPS 509
>TMSP8_RAT (P83748) Transmembrane serine protease 8 precursor (EC 3.4.21.-)| (Distal intestinal serine protease) (Transmembrane serine protease 1) (TMSP-1) Length = 304 Score = 30.8 bits (68), Expect = 2.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 248 VMHFHWVHDGCHCLRRPWGSGYDHLQLG 331 ++H WV HC RRP S + H+++G Sbjct: 61 LIHEVWVLTAAHCFRRPLNSSFYHVKVG 88
>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor| (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin) Length = 1004 Score = 30.4 bits (67), Expect = 2.9 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSP-SPRDGEDN 282 PPG P PR SPM+A P +PA + R P P D +D+ Sbjct: 250 PPGENDPEPRYLVHSPMRAPRP-FAAPALSQRWPLPPGDSKDS 291
>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein| 12) (Small proline-rich-like epidermal differentiation complex protein 1A) Length = 110 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = +2 Query: 347 CQPSSDSCCSPLVQGFCCQEGWG 415 C PSS SCC P G CC G G Sbjct: 48 CGPSSGSCCGP-SSGGCCSSGGG 69
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = -2 Query: 395 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGN 276 RSP+P SRSP + SP RS SP D D N Sbjct: 279 RSPSPPRGSRSPSEKGSPR------RSRSASPMDNGDGDN 312
>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament| protein) (Neurofilament heavy polypeptide) (NF-H) Length = 1072 Score = 30.0 bits (66), Expect = 3.8 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%) Frame = -2 Query: 410 TPPGSRSPAPREN---SRSPMKADSPNNMSPAANGRSPS 303 +P G++SPA ++ ++SP +A SP P A +SP+ Sbjct: 696 SPAGAKSPAEAKSPVVAKSPAEAKSPAEAKPPAEAKSPA 734
>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)| Length = 162 Score = 30.0 bits (66), Expect = 3.8 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 344 GCQPSSDSCCSPLVQGFCC 400 GC+ +S CC P+ QG CC Sbjct: 104 GCKCTSCQCCKPVQQGCCC 122
>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein| 11) Length = 110 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = +2 Query: 347 CQPSSDSCCSPLVQGFCCQEGWG 415 C PSS SCC P G CC G G Sbjct: 48 CGPSSGSCCGP-SSGGCCSSGAG 69
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKAD-SPNNMSPAANGRSPSPRDG 291 PPG ++ +RSPM + +PN MSP + GR P P G Sbjct: 121 PPGQQNAF----NRSPMMPNGTPNMMSPPSMGRVPGPSPG 156
>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2| Length = 891 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 294 PP P P ++ +SP+ +P++ SPA SP +D Sbjct: 73 PPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPGKQD 110
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.0 bits (66), Expect = 3.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -2 Query: 395 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 270 RS +PR SRSP + S + + RSP RD D+ + R Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRR 156
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 294 PP P P ++ +SP+ +P++ SPA SP +D Sbjct: 73 PPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPGKQD 110
>SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone| stem-loop-binding protein) Length = 276 Score = 29.6 bits (65), Expect = 5.0 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = -2 Query: 398 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGED 285 S +P ENSRS +SPN+ + +ANG + +P+ G + Sbjct: 118 SFTPPSNENSRS----NSPNSSNSSANGDAAAPKGGNN 151
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = -1 Query: 432 QGEGPEPHPSWQQKPCTKGEQQESDEG*QP**HEPSCKWS*PEPQGRRRQWQP 274 Q +GP PHP ++P +G Q +G P P K P PQG + +P Sbjct: 88 QSQGPPPHPGKPERPPPQGGNQ--SQGTPP----PPGKPERPPPQGGNQSHRP 134
>SSPA_STAAN (Q7A6A6) Glutamyl endopeptidase precursor (EC 3.4.21.19)| (Staphylococcal serine proteinase) (V8 protease) (V8 proteinase) (Endoproteinase Glu-C) Length = 342 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 273 P +P N +P D+PNN N +P+ D DNG++ Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333
>SSPA_STAAM (Q99V45) Glutamyl endopeptidase precursor (EC 3.4.21.19)| (Staphylococcal serine proteinase) (V8 protease) (V8 proteinase) (Endoproteinase Glu-C) Length = 342 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 273 P +P N +P D+PNN N +P+ D DNG++ Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/37 (40%), Positives = 15/37 (40%) Frame = -2 Query: 407 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 297 PP P P RSP SP RSPSPR Sbjct: 577 PPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR 613
>RACD_STRTR (P29079) Aspartate racemase (EC 5.1.1.13)| Length = 243 Score = 29.3 bits (64), Expect = 6.5 Identities = 11/37 (29%), Positives = 19/37 (51%) Frame = -1 Query: 198 VHHLVRVESRSNSSYSYKTLQNLEQRLACTSLILSCT 88 ++H ++ N Y+ L+ +RL C +IL CT Sbjct: 162 IYHEIKESDHLNQELYYEILEEAVERLNCEKVILGCT 198
>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein| 5.9) (Ultrahigh sulfur keratin-associated protein 5.9) (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra high-sulfur matrix protein A) (UHS keratin A) (UHS KerA) Length = 169 Score = 28.9 bits (63), Expect = 8.5 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 329 GSCY*GCQPSSDSCCSPLVQGFCCQ 403 GSC GC+ SCC+P+ +CC+ Sbjct: 22 GSCGSGCRGCGPSCCAPV---YCCK 43
>SSPA_STAAU (P04188) Glutamyl endopeptidase precursor (EC 3.4.21.19)| (Staphylococcal serine proteinase) (V8 protease) (V8 proteinase) (Endoproteinase Glu-C) Length = 336 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 389 PAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 273 P +N +P D+PNN N +P+ D DNG++ Sbjct: 289 PNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 327
>ODO1_YEAST (P20967) 2-oxoglutarate dehydrogenase E1 component, mitochondrial| precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) Length = 1014 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 66 GVSNTEIEYTIKSNSYRQVFVQDFGEFCNCRKNLIDSRLSPGDALPLGEHWK 221 GV E Y++ S Y ++ FG+F N + +ID ++ G+ + WK Sbjct: 718 GVMGFEYGYSLTSPDYLVMWEAQFGDFANTAQVIIDQFIAGGE-----QKWK 764
>IF2_CORJK (Q4JV51) Translation initiation factor IF-2| Length = 922 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -2 Query: 404 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGE 288 PG++ P P+ R+P A++P + A +P PR G+ Sbjct: 156 PGAK-PGPKPGGRAPRVANNPFSSGAPAERPAPRPRGGQ 193
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = -2 Query: 410 TPPGSRSPAPREN----SRSPMK-ADSPNNMSPAANGRSPSPR 297 +P GSRSP+PR SRSP++ +S + AA G S + R Sbjct: 823 SPSGSRSPSPRRRRDSPSRSPVRDRESGGRAAAAAPGNSEARR 865
>CORA_HPBDW (P17191) Core antigen| Length = 305 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 395 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 297 RS + + SP +A SP S +++ RSPSPR Sbjct: 272 RSKSRERRAPSPQRAGSPLPRSSSSHHRSPSPR 304
>CORA_HPBDC (P30027) Core antigen| Length = 305 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 395 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 297 RS + + SP +A SP S +++ RSPSPR Sbjct: 272 RSKSRERRAPSPQRAGSPLPRSSSSHHRSPSPR 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,897,899 Number of Sequences: 219361 Number of extensions: 1342842 Number of successful extensions: 5317 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 4718 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5295 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
