ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart18f03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15693.1|HVLP58 Barley mRNA for chloroplast high molecular mass early light-inducible protein (ELIP) (clone HV58) Length = 860 Score = 513 bits (259), Expect = e-142 Identities = 329/347 (94%), Gaps = 4/347 (1%) Strand = Plus / Minus Query: 54 gtacaaaattgcaacgtggctacaacggttagtgctattacaatttgtcagttcaaaatg 113 |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||| || Sbjct: 860 gtacaaaattgcaaagtggctacaacggttagtgttattacaacttgtcagttcaaa-tg 802 Query: 114 gaaatccacagcgctacaatcccttaaatgttgacgaacggcgcgccggtgatgaactcg 173 ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 801 aaaacccacagcgctgcaatcccttagatgttgacgaacggcgcgccggtgatgaactcg 742 Query: 174 gtggcggcgagcgcgacgaggccgagcatagcgaagcggccgttccagagctcggcgtcg 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 gtggcggcgagcgcgacgaggccgagcatagcgaagcggccgttccagagctcggcgtcg 682 Query: 234 gcgctccagatgccgctggatttgctctccacgctctggccctgcagcagcggcaccagc 293 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 681 gcgctccagatgccgctggatttgctctccacgctctggccctgcagcagcggcagcagc 622 Query: 294 gacgcttgggagaaaacccctgcggtcgccaggaaccagcccagcccgg-cg-ccac-tg 350 |||||| |||||||||||||||||||||||| ||||| ||||||||| || |||| || Sbjct: 621 gacgctacggagaaaacccctgcggtcgccagaaaccacgccagcccggacgaccacatg 562 Query: 351 ccggcctggtcgaggagcccaccgccacgcgccgcctcgacggacag 397 ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 ccgacctggtcgaggagcccaccgccacgcgccgcctcgacggacag 515
>emb|X15692.1|HVLP90 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV90) Length = 660 Score = 143 bits (72), Expect = 5e-31 Identities = 135/156 (86%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||| ||| |||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 543 gttgatgaaaggcgcgccggtgatgatctcggtggcggccagcgcgacgagtccgagcat 484 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctccagatgccgctggatttgctctc 262 |||||||||||||||||||| || |||| |||| || |||| ||| || | ||| ||| Sbjct: 483 ggcgaagcggccgttccagagttccgcgttggcgttcatgatggcgccggctctgccctc 424 Query: 263 cacgctctggccctgcagcagcggcaccagcgacgc 298 |||||| |||||| |||||||||||||||||||| Sbjct: 423 ggcgctctcgccctggagcagcggcaccagcgacgc 388
>gb|AF365951.1|AF365951 Zea mays early light-inducible protein ELIP mRNA, complete cds; nuclear gene for chloroplast product Length = 852 Score = 139 bits (70), Expect = 8e-30 Identities = 88/94 (93%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct: 647 gttgacgaagggcgcgccggtaaggtactcggtgacggcgagcgcgacgaggccgagcat 588 Query: 203 agcgaagcggccgttccagagctcggcgtcggcg 236 ||||||||||||||||||||||||||||||||| Sbjct: 587 ggcgaagcggccgttccagagctcggcgtcggcg 554
>ref|XM_476845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 564 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||||||| |||| |||||||| |||||||||| |||||| ||||||||||||||||| Sbjct: 558 gttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagcat 499 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 |||||||||||||||||||||||||||||||||||| Sbjct: 498 ggcgaagcggccgttccagagctcggcgtcggcgctc 462 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 353 ctgccggcctgctccaggagcccgccgccccgcgacgcctccacgg 308 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 422 agcagcggcaccagcgacgc 403
>ref|XM_476844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 603 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 597 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 538 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||||||||||||||||||||| |||||||||||| Sbjct: 537 ggcgaagcggccgttccagagctcagcgtcggcgctc 501 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 392 ctgccggcctgctccaggagcccgccgccgcgcgacgcctccacgg 347 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 461 agcagcggcaccagcgacgc 442
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||||||| |||| |||||||| |||||||||| |||||| ||||||||||||||||| Sbjct: 4178828 gttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagcat 4178769 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 |||||||||||||||||||||||||||||||||||| Sbjct: 4178768 ggcgaagcggccgttccagagctcggcgtcggcgctc 4178732 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 4176387 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 4176328 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||||||||||||||||||||| |||||||||||| Sbjct: 4176327 ggcgaagcggccgttccagagctcagcgtcggcgctc 4176291 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 4178623 ctgccggcctgctccaggagcccgccgccccgcgacgcctccacgg 4178578 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 4176182 ctgccggcctgctccaggagcccgccgccgcgcgacgcctccacgg 4176137 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 16966330 gagctcggcgtcggcgctcc 16966311 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 14658206 gagctcggcgtcggcgctcc 14658225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 4178692 agcagcggcaccagcgacgc 4178673 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 4176251 agcagcggcaccagcgacgc 4176232 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 2014585 gagctcggcgtcggcgctcc 2014604
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||||||| |||| |||||||| |||||||||| |||||| ||||||||||||||||| Sbjct: 62450 gttgacgaagggcgagccggtgaggaactcggtgaaggcgagggcgacgaggccgagcat 62391 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 |||||||||||||||||||||||||||||||||||| Sbjct: 62390 ggcgaagcggccgttccagagctcggcgtcggcgctc 62354 Score = 137 bits (69), Expect = 3e-29 Identities = 90/97 (92%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 60009 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 59950 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||||||||||||||||||||| |||||||||||| Sbjct: 59949 ggcgaagcggccgttccagagctcagcgtcggcgctc 59913 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 62245 ctgccggcctgctccaggagcccgccgccccgcgacgcctccacgg 62200 Score = 44.1 bits (22), Expect = 0.34 Identities = 40/46 (86%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 ||||||||||| || |||||||| ||||| |||| |||||| |||| Sbjct: 59804 ctgccggcctgctccaggagcccgccgccgcgcgacgcctccacgg 59759 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 62314 agcagcggcaccagcgacgc 62295 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 59873 agcagcggcaccagcgacgc 59854
>emb|X15691.1|HVLP60 Barley mRNA for chloroplast low molecular mass early light-inducible protein (ELIP) (clone HV60) Length = 764 Score = 137 bits (69), Expect = 3e-29 Identities = 123/141 (87%) Strand = Plus / Minus Query: 158 gccggtgatgaactcggtggcggcgagcgcgacgaggccgagcatagcgaagcggccgtt 217 ||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||| Sbjct: 609 gccggtgatgatctcggtggcggcgagcgcgacgagtccgatcatggcgaagcggccgtt 550 Query: 218 ccagagctcggcgtcggcgctccagatgccgctggatttgctctccacgctctggccctg 277 ||||||||| |||| |||| || |||| ||| || | ||| ||| |||||| |||||| Sbjct: 549 ccagagctccgcgttggcgttcatgatggcgccggctctgccctcggcgctctcgccctg 490 Query: 278 cagcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 489 gagcagcggcaccagcgacgc 469
>ref|NM_188763.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 609 Score = 129 bits (65), Expect = 7e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 603 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 544 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||| || ||||||||||||||||||||||||||| Sbjct: 543 ggcgaaccgcccgttccagagctcggcgtcggcgctc 507 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 |||||||||||||| |||||||| ||||| |||| |||||| |||| Sbjct: 398 ctgccggcctggtccaggagcccgccgccgcgcgacgcctccacgg 353 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 467 agcagcggcaccagcgacgc 448
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 129 bits (65), Expect = 7e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 25815 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 25756 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||| || ||||||||||||||||||||||||||| Sbjct: 25755 ggcgaaccgcccgttccagagctcggcgtcggcgctc 25719 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 |||||||||||||| |||||||| ||||| |||| |||||| |||| Sbjct: 25610 ctgccggcctggtccaggagcccgccgccgcgcgacgcctccacgg 25565 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 25679 agcagcggcaccagcgacgc 25660
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 129 bits (65), Expect = 7e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 58353 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 58294 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||| || ||||||||||||||||||||||||||| Sbjct: 58293 ggcgaaccgcccgttccagagctcggcgtcggcgctc 58257 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 |||||||||||||| |||||||| ||||| |||| |||||| |||| Sbjct: 58148 ctgccggcctggtccaggagcccgccgccgcgcgacgcctccacgg 58103 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 58217 agcagcggcaccagcgacgc 58198
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 7e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 8061702 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 8061643 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||| || ||||||||||||||||||||||||||| Sbjct: 8061642 ggcgaaccgcccgttccagagctcggcgtcggcgctc 8061606 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 |||||||||||||| |||||||| ||||| |||| |||||| |||| Sbjct: 8061497 ctgccggcctggtccaggagcccgccgccgcgcgacgcctccacgg 8061452 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 23883570 cgagcgcgacgaggccgagc 23883551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 18559026 gagctcggcgtcggcgctcc 18559007 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 8061566 agcagcggcaccagcgacgc 8061547
>dbj|AK062972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E06, full insert sequence Length = 942 Score = 129 bits (65), Expect = 7e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 752 gttgacgagcggcgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 693 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 ||||| || ||||||||||||||||||||||||||| Sbjct: 692 ggcgaaccgcccgttccagagctcggcgtcggcgctc 656 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 348 ctgccggcctggtcgaggagcccaccgccacgcgccgcctcgacgg 393 |||||||||||||| |||||||| ||||| |||| |||||| |||| Sbjct: 547 ctgccggcctggtccaggagcccgccgccgcgcgacgcctccacgg 502 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agcagcggcaccagcgacgc 298 |||||||||||||||||||| Sbjct: 616 agcagcggcaccagcgacgc 597
>gb|AY105095.1| Zea mays PCO131564 mRNA sequence Length = 907 Score = 121 bits (61), Expect = 2e-24 Identities = 88/97 (90%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||| |||||| |||||||||| | |||| ||| |||||||||||||||||||||||| Sbjct: 269 gttgatgaacggtgcgccggtgaggtactcagtgaaggcgagcgcgacgaggccgagcat 210 Query: 203 agcgaagcggccgttccagagctcggcgtcggcgctc 239 |||||||||||||||||||||||||||| ||||||| Sbjct: 209 ggcgaagcggccgttccagagctcggcgttggcgctc 173
>dbj|D85513.1| Oryza sativa (japonica cultivar-group) ELIP mRNA, partial sequence Length = 296 Score = 99.6 bits (50), Expect = 7e-18 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 |||||||| || || |||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 136 gttgacgagcgncgagccggtgaggaactcggtgaaggcgagcgcgacgaggccgagcat 77 Query: 203 agcgaagcggcc-gttccagagctcggcgtcggcg 236 ||||| || || |||||||||||||| ||||||| Sbjct: 76 ggcgaaccgnccngttccagagctcggngtcggcg 42
>gb|AF017357.1|AF017357 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 883 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 158 gccggtgatgaactcggtggcggcgagcgcgacgaggccgagcatagcgaagcggccgtt 217 |||||||| |||||||||| |||||| |||||||| |||||||| |||||||||||||| Sbjct: 711 gccggtgaggaactcggtgaaggcgagggcgacgagcccgagcatggcgaagcggccgtt 652 Query: 218 ccagag 223 |||||| Sbjct: 651 ccagag 646
>gb|AF017356.1|AF017356 Oryza sativa low molecular early light-inducible protein mRNA, complete cds Length = 818 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 158 gccggtgatgaactcggtggcggcgagcgcgacgaggccgagcatagcgaagcggccgtt 217 |||||||| |||||||||| |||||| |||||||| |||||||| |||||||||||||| Sbjct: 646 gccggtgaggaactcggtgaaggcgagggcgacgagcccgagcatggcgaagcggccgtt 587 Query: 218 ccagag 223 |||||| Sbjct: 586 ccagag 581
>dbj|AB019617.1| Triticum aestivum wcr (wheat cold-regulated) 12 mRNA for early light-inducible protein (ELIP), complete cds Length = 818 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 143 gttgacgaacggcgcgccggtgatgaactcggtggcggcgagcgcgacgaggccgagcat 202 ||||| ||| |||||||| ||||||| ||| || || || || |||||||| |||||||| Sbjct: 633 gttgatgaagggcgcgccagtgatgatctccgttgccgccagagcgacgagtccgagcat 574 Query: 203 agcgaagcggccgttccagagctcggcgtcggcg 236 ||||||||||||||||||||||| |||| |||| Sbjct: 573 ggcgaagcggccgttccagagctccgcgttggcg 540
>emb|AJ242806.1|SST242806 Sporobolus stapfianus partial mRNA for putative early light-inducible protein (ELIP) Length = 246 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 171 tcggtggcggcgagcgcgacgaggccgagcatagcgaagcggccgttccagagctcggcg 230 |||||||| || |||||||||| || ||||| ||| |||||||||||||||||||||| Sbjct: 66 tcggtggctgcaagcgcgacgatcccaagcatggcggcgcggccgttccagagctcggcg 7 Query: 231 tc 232 || Sbjct: 6 tc 5
>gb|AY123144.1| Griffithsia japonica low molecular mass early light-inducible protein HV60 mRNA, complete cds Length = 720 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 191 gaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 |||||||| |||||||| |||||||||||||| |||||||| Sbjct: 591 gaggccgaccatagcgacgcggccgttccagatttcggcgtc 550
>gb|AY123104.1| Griffithsia japonica low molecular mass early light-inducible protein mRNA, partial cds Length = 360 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 191 gaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 |||||||| |||||||| |||||||||||||| |||||||| Sbjct: 249 gaggccgaccatagcgacgcggccgttccagatttcggcgtc 208
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.086 Identities = 29/31 (93%) Strand = Plus / Minus Query: 315 gcggtcgccaggaaccagcccagcccggcgc 345 ||||||||||||| ||||||| ||||||||| Sbjct: 2487089 gcggtcgccaggatccagcccggcccggcgc 2487059
>gb|AC146018.3| Pan troglodytes BAC clone RP43-135A21 from 7, complete sequence Length = 177841 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 cagcccggcgccactgccggc 355 ||||||||||||||||||||| Sbjct: 85472 cagcccggcgccactgccggc 85452
>emb|AL670958.4| Mouse DNA sequence from clone RP23-410K19 on chromosome 4, complete sequence Length = 177041 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 caaaattgcaacgtggctaca 77 ||||||||||||||||||||| Sbjct: 153457 caaaattgcaacgtggctaca 153477
>gb|AC093183.3| Homo sapiens chromosome 7 clone RP11-786I1, complete sequence Length = 174133 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cagcccggcgccactgccggc 355 ||||||||||||||||||||| Sbjct: 145064 cagcccggcgccactgccggc 145084
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 266 gctctggccctgcagcagcggcaccagcg 294 ||||||||||||||||| |||| |||||| Sbjct: 1114464 gctctggccctgcagcatcggcgccagcg 1114436
>gb|AC018638.5|AC018638 Homo sapiens chromosome 7 clone RP11-274B21, complete sequence Length = 176875 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 cagcccggcgccactgccggc 355 ||||||||||||||||||||| Sbjct: 90705 cagcccggcgccactgccggc 90685
>gb|AE004588.1| Pseudomonas aeruginosa PAO1, section 149 of 529 of the complete genome Length = 10551 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 tggcggcgagcgcgacgaggc 195 ||||||||||||||||||||| Sbjct: 2105 tggcggcgagcgcgacgaggc 2125
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 cggcgagcgcgacgaggccga 198 ||||||||||||||||||||| Sbjct: 66229 cggcgagcgcgacgaggccga 66209
>emb|X05867.1|HSRN5SP2 Human 5S ribosomal RNA pseudogene Length = 413 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cagcccggcgccactgccggc 355 ||||||||||||||||||||| Sbjct: 184 cagcccggcgccactgccggc 204
>ref|NM_117551.2| Arabidopsis thaliana ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2); chlorophyll binding AT4G14690 (ELIP2) mRNA, complete cds Length = 806 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 626 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 583
>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10, complete sequence Length = 150825 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 101666 gagctcggcgtcggcgctcc 101647
>ref|XM_481844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 303 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggtggcggcgagcgcgacg 191 |||||||||||||||||||| Sbjct: 50 cggtggcggcgagcgcgacg 69
>ref|XM_481704.1| Oryza sativa (japonica cultivar-group), mRNA Length = 642 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 146 gagctcggcgtcggcgctcc 127
>ref|XM_475223.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 756 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 570 gagctcggcgtcggcgctcc 589
>gb|DQ225358.1| Cervus nippon hortulorum MHC class II antigen (Ceni-DRB) gene, Ceni-DRB*19 allele, exon 2 and partial cds Length = 249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>gb|DQ225346.1| Cervus nippon hortulorum MHC class II antigen (Ceni-DRB) gene, Ceni-DRB*07 allele, exon 2 and partial cds Length = 249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>gb|DQ225345.1| Cervus nippon hortulorum MHC class II antigen (Ceni-DRB) gene, Ceni-DRB*06 allele, exon 2 and partial cds Length = 249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>ref|NM_195639.1| Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0053D03.18), mRNA Length = 2484 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 361 gagctcggcgtcggcgctcc 380
>ref|NM_192692.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 999 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 729 cgagcgcgacgaggccgagc 748
>ref|XM_476574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 595 gagctcggcgtcggcgctcc 576
>gb|BT019621.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 630 ctccacgctctggccctgca 611
>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02 map C8, complete sequence Length = 116304 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 109052 gagctcggcgtcggcgctcc 109033
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 1234501 cgagcgcgacgaggccgagc 1234482
>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0002C14, complete sequence Length = 154029 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 34766 gagctcggcgtcggcgctcc 34785
>gb|AC120984.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026G02, complete sequence Length = 123472 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 5827 gagctcggcgtcggcgctcc 5846
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18, complete sequence Length = 123508 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 26216 gagctcggcgtcggcgctcc 26197
>gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, complete sequence Length = 126566 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 47500 ctccacgctctggccctgca 47519
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 2270867 cgagcgcgacgaggccgagc 2270886
>ref|XM_658899.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6387.2), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ggcggcgagcgcgacgaggccgag 199 |||| ||||||||||||||||||| Sbjct: 375 ggcgccgagcgcgacgaggccgag 352
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 15253 gagctcggcgtcggcgctcc 15272
>gb|AC135922.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0411C02, complete sequence Length = 145676 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 81670 gagctcggcgtcggcgctcc 81689
>gb|AC134345.2| Oryza sativa (jpaonica cultivar-group) chromosome 5 PAC clone P0012A07, complete sequence Length = 136858 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 88081 gagctcggcgtcggcgctcc 88100
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 9098721 gagctcggcgtcggcgctcc 9098702 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gcgacgaggccgagcatagcgaagcggc 213 ||||||||||||||||| ||| |||||| Sbjct: 6359946 gcgacgaggccgagcatggcgcagcggc 6359973
>ref|NM_003639.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma (IKBKG), mRNA Length = 2121 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 889 ctccacgctctggccctgca 870
>gb|AC120884.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017D19, complete sequence Length = 142015 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 75813 gagctcggcgtcggcgctcc 75832
>gb|AC124408.4| Mus musculus BAC clone RP24-262E22 from chromosome 14, complete sequence Length = 159082 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 aacatgagatttacaaaatt 41 |||||||||||||||||||| Sbjct: 45154 aacatgagatttacaaaatt 45135
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 263153 cgagcgcgacgaggccgagc 263172
>gb|AY114157.1| Homo sapiens inhibitor of kappaB kinase gamma (IKBKG) mRNA, complete cds Length = 2073 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 854 ctccacgctctggccctgca 835
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1 Length = 206606 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 177083 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 177040
>gb|AY063083.1| Arabidopsis thaliana unknown protein (At4g14690) mRNA, complete cds Length = 613 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 536 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 493
>gb|AF370266.1| Arabidopsis thaliana unknown protein (At4g14690) mRNA, complete cds Length = 785 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 626 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 583
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 296990 ggcggcgtgcgcgacgaggccgag 297013
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 56289 ggcggcgtgcgcgacgaggccgag 56312
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gcgacgaggccgagcatagcgaagcggc 213 ||||||||||||||||| ||| |||||| Sbjct: 40072 gcgacgaggccgagcatggcgcagcggc 40099
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 134402 ggcggcgtgcgcgacgaggccgag 134425
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 2103840 cgagcgcgacgaggccgagc 2103821
>emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065J09, complete sequence Length = 117443 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 gagcccaccgccacgcgccgcctc 388 |||||| ||||||||||||||||| Sbjct: 69027 gagcccgccgccacgcgccgcctc 69050
>gb|BC050612.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:60070 IMAGE:6062527), complete cds Length = 1990 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 777 ctccacgctctggccctgca 758
>gb|BC046922.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone IMAGE:5476394), containing frame-shift errors Length = 1960 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 745 ctccacgctctggccctgca 726
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 41669 gagctcggcgtcggcgctcc 41650
>gb|BC012114.1| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:20127 IMAGE:4651870), complete cds Length = 2071 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 854 ctccacgctctggccctgca 835
>gb|BC000299.2| Homo sapiens inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma, mRNA (cDNA clone MGC:8374 IMAGE:2820134), complete cds Length = 1966 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 750 ctccacgctctggccctgca 731
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39 Length = 197976 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 122579 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 122536
>emb|CR604149.1| full-length cDNA clone CS0DE005YJ20 of Placenta of Homo sapiens (human) Length = 1943 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 766 ctccacgctctggccctgca 747
>emb|CR600010.1| full-length cDNA clone CS0DL002YJ17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1958 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 773 ctccacgctctggccctgca 754
>gb|AF270674.1| Bubalus bubalis clone Z3/2 MHC class II antigen (DRB3) gene, partial cds Length = 236 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 164 gttccagagctcggcgtcgg 145
>gb|AF270662.1| Bubalus bubalis clone J1 MHC class II antigen (DRB3) gene, partial cds Length = 236 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 164 gttccagagctcggcgtcgg 145
>gb|AF270661.1| Bubalus bubalis clone I3 MHC class II antigen (DRB3) gene, partial cds Length = 236 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 164 gttccagagctcggcgtcgg 145
>gb|AF270660.1| Bubalus bubalis clone H2 MHC class II antigen (DRB3) gene, partial cds Length = 236 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 164 gttccagagctcggcgtcgg 145
>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0014J14, complete sequence Length = 191397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 77795 gagctcggcgtcggcgctcc 77776
>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053D03, from chromosome 10, complete sequence Length = 199113 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 104101 gagctcggcgtcggcgctcc 104082
>gb|AF030688.1|AF030688 Mycobacterium smegmatis ATP-dependent proteinase (lon) gene, complete cds Length = 3063 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 1471 ggcggcgtgcgcgacgaggccgag 1494
>dbj|AK013625.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900037O03 product:unclassifiable, full insert sequence Length = 894 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tacaatcccttaaatgttga 147 |||||||||||||||||||| Sbjct: 328 tacaatcccttaaatgttga 347
>gb|AF074382.1|AF074382 Homo sapiens IkB kinase gamma subunit (IKK-gamma) mRNA, complete cds Length = 1994 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 778 ctccacgctctggccctgca 759
>ref|NG_001576.1| Homo sapiens deltaNEMO (deltaNEMO) pseudogene on chromosome X Length = 9086 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 4458 ctccacgctctggccctgca 4439
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 32522935 gagctcggcgtcggcgctcc 32522916 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 365 gagcccaccgccacgcgccgcctc 388 |||||| ||||||||||||||||| Sbjct: 26181842 gagcccgccgccacgcgccgcctc 26181865 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 24795124 gagctcggcgtcggcgctcc 24795105 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 384288 gagctcggcgtcggcgctcc 384269
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 25606258 gagctcggcgtcggcgctcc 25606277
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 26126440 gagctcggcgtcggcgctcc 26126459 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 22645027 gagctcggcgtcggcgctcc 22645046
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 8152378 gagctcggcgtcggcgctcc 8152397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 7252434 gagctcggcgtcggcgctcc 7252415
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06, complete sequence Length = 119910 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 41901 gagctcggcgtcggcgctcc 41882
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 7855642 gagctcggcgtcggcgctcc 7855623 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 2099978 gagctcggcgtcggcgctcc 2099997
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggtggcggcgagcgcgacg 191 |||||||||||||||||||| Sbjct: 15922327 cggtggcggcgagcgcgacg 15922346 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 14840606 gagctcggcgtcggcgctcc 14840587 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 14822925 gagctcggcgtcggcgctcc 14822906 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 9156265 gagctcggcgtcggcgctcc 9156246
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 11942959 gagctcggcgtcggcgctcc 11942940 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 10179896 gagctcggcgtcggcgctcc 10179877 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 9116336 gagctcggcgtcggcgctcc 9116317
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 19773592 gagctcggcgtcggcgctcc 19773573 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 13001601 gagctcggcgtcggcgctcc 13001620 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 12717794 gagctcggcgtcggcgctcc 12717813
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 9096554 gagctcggcgtcggcgctcc 9096535 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 186 gcgacgaggccgagcatagcgaagcggc 213 ||||||||||||||||| ||| |||||| Sbjct: 6359159 gcgacgaggccgagcatggcgcagcggc 6359186
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 30630182 gagctcggcgtcggcgctcc 30630163 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 11719201 gagctcggcgtcggcgctcc 11719220 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 11621697 gagctcggcgtcggcgctcc 11621678
>emb|BX826673.1|CNS0A4G4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB53ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 446 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 301 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 258
>emb|BX829127.1|CNS0A2PD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL73ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 723 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 587 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 544
>gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chromosome x, complete sequence Length = 174819 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 169282 ctccacgctctggccctgca 169301 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 86000 ctccacgctctggccctgca 85981
>gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1087L19 map q28, complete sequence Length = 147234 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 124729 ctccacgctctggccctgca 124748 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 41268 ctccacgctctggccctgca 41249
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 acggcgcgccggtgatgaactcgg 174 ||||||||| |||||||||||||| Sbjct: 3580934 acggcgcgctggtgatgaactcgg 3580911
>gb|DQ187336.1| Bubalus bubalis MHC class II antigen (BoLA-DRB3.2) gene, BoLA-DRB3.2*obe allele, exon 2 and partial cds Length = 284 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 188 gttccagagctcggcgtcgg 169
>gb|AY088811.1| Arabidopsis thaliana clone 95834 mRNA, complete sequence Length = 757 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 626 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 583
>gb|AF134132.1| Arabidopsis thaliana chromosome IV early light-inducable protein (Elip) mRNA, complete cds Length = 690 Score = 40.1 bits (20), Expect = 5.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 189 acgaggccgagcatagcgaagcggccgttccagagctcggcgtc 232 ||||| |||||||| || || || |||||||| ||||||||||| Sbjct: 543 acgagaccgagcatcgcaaaccgaccgttccatagctcggcgtc 500
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 172 cggtggcggcgagcgcgacgaggccgag 199 ||||||| || ||||||||||||||||| Sbjct: 4986716 cggtggccgccagcgcgacgaggccgag 4986689 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 3856800 ggcggcgtgcgcgacgaggccgag 3856777 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 1958356 ggcggcgtgcgcgacgaggccgag 1958379 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cggcgagcgcgacgaggccg 197 |||||||||||||||||||| Sbjct: 151067 cggcgagcgcgacgaggccg 151086
>gb|AF261086.1|AF261086 Homo sapiens NF-kB essential modulator NEMO mRNA, complete cds Length = 2121 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 889 ctccacgctctggccctgca 870
>gb|AF385477.1| Bubalus bubalis MHC class II antigen (Bula-DRB) gene, Bula-DRB*05 allele, exon 2 and partial cds Length = 243 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>dbj|AP005925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0030G18 Length = 167557 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 132693 gagctcggcgtcggcgctcc 132674 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 115012 gagctcggcgtcggcgctcc 114993
>dbj|AP003563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1168H06 Length = 185600 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 158243 gagctcggcgtcggcgctcc 158224
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ggcggcgagcgcgacgaggccgag 199 ||||||| |||||||||||||||| Sbjct: 5482343 ggcggcgtgcgcgacgaggccgag 5482320
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ggcggcgagcgcgacgaggc 195 |||||||||||||||||||| Sbjct: 988024 ggcggcgagcgcgacgaggc 988043
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0662B01 Length = 155913 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 10358 gagctcggcgtcggcgctcc 10339
>dbj|AP004791.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0491D10 Length = 162039 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 146262 gagctcggcgtcggcgctcc 146243
>dbj|AP006177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0734C01 Length = 163208 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 102314 gagctcggcgtcggcgctcc 102295
>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 29974 cgagcgcgacgaggccgagc 29955
>dbj|AP005387.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0084K06 Length = 177895 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 163654 gagctcggcgtcggcgctcc 163635
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 102845 gagctcggcgtcggcgctcc 102826
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 45741 gagctcggcgtcggcgctcc 45722
>dbj|AP005101.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0026I22 Length = 143302 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 51204 gagctcggcgtcggcgctcc 51223
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 98882 gagctcggcgtcggcgctcc 98901
>dbj|AP005576.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1610_C11 Length = 104553 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 25395 gagctcggcgtcggcgctcc 25414
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 165490 gagctcggcgtcggcgctcc 165509 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 67986 gagctcggcgtcggcgctcc 67967
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 27091 gagctcggcgtcggcgctcc 27110
>emb|AL928577.21| Mouse DNA sequence from clone RP23-395H4 on chromosome 4, complete sequence Length = 104509 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tacaatcccttaaatgttga 147 |||||||||||||||||||| Sbjct: 23514 tacaatcccttaaatgttga 23495
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 142190 gagctcggcgtcggcgctcc 142171
>gb|AY888678.1| Synthetic construct Homo sapiens clone FLH010484.01X inhibitor of kappa light polypeptide gene enhancer in B-cells kinase gamma (IKBKG) mRNA, complete cds Length = 1260 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 630 ctccacgctctggccctgca 611
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 91759 gagctcggcgtcggcgctcc 91740
>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012O03 Length = 141860 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cggtggcggcgagcgcgacg 191 |||||||||||||||||||| Sbjct: 102370 cggtggcggcgagcgcgacg 102389
>emb|AJ271718.1|HSA271718 Homo sapiens NEMO/IKKgamma gene for NF-KB essential modulator, exons 2-10 Length = 23106 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 18254 ctccacgctctggccctgca 18235
>gb|AF091453.1|AF091453 Homo sapiens NEMO protein (NEMO) mRNA, complete cds Length = 2035 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 815 ctccacgctctggccctgca 796
>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170588 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gctctccacgctctggccct 276 |||||||||||||||||||| Sbjct: 56995 gctctccacgctctggccct 56976
>gb|AF062089.1|AF062089 Homo sapiens leucine zipper protein Fip3p mRNA, complete cds Length = 1975 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 740 ctccacgctctggccctgca 721
>gb|AC157529.2| Pan troglodytes BAC clone CH251-498N14 from chromosome unknown, complete sequence Length = 186743 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ctccacgctctggccctgca 279 |||||||||||||||||||| Sbjct: 171533 ctccacgctctggccctgca 171514
>dbj|AK122407.1| Mus musculus mRNA for mKIAA0962 protein Length = 5953 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tacaatcccttaaatgttga 147 |||||||||||||||||||| Sbjct: 5389 tacaatcccttaaatgttga 5408
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgagcgcgacgaggccgagc 200 |||||||||||||||||||| Sbjct: 2757728 cgagcgcgacgaggccgagc 2757709
>gb|AY679507.1| Cervus nippon MHC class II antigen (Ceni-DRB) gene, Ceni-DRB*24 allele, exon 2 and partial cds Length = 249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>gb|AY679497.1| Cervus nippon MHC class II antigen (Ceni-DRB) gene, Ceni-DRB*14 allele, exon 2 and partial cds Length = 249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gttccagagctcggcgtcgg 234 |||||||||||||||||||| Sbjct: 162 gttccagagctcggcgtcgg 143
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 8157477 gagctcggcgtcggcgctcc 8157496 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 7255733 gagctcggcgtcggcgctcc 7255714
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 26445136 gagctcggcgtcggcgctcc 26445155 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 22954938 gagctcggcgtcggcgctcc 22954957
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 25534434 gagctcggcgtcggcgctcc 25534453
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 68947 gagctcggcgtcggcgctcc 68928
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 67460 gagctcggcgtcggcgctcc 67441
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 56840 gagctcggcgtcggcgctcc 56821
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gagctcggcgtcggcgctcc 240 |||||||||||||||||||| Sbjct: 23040 gagctcggcgtcggcgctcc 23021
>emb|AL732403.9| Mouse DNA sequence from clone RP23-119L20 on chromosome 2, complete sequence Length = 211892 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 cagttcaaaatggaaatccacagc 125 ||||||| |||||||||||||||| Sbjct: 176744 cagttcacaatggaaatccacagc 176767
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 acggcgcgccggtgatgaactcgg 174 ||||||||| |||||||||||||| Sbjct: 56871 acggcgcgctggtgatgaactcgg 56894 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,018,519 Number of Sequences: 3902068 Number of extensions: 3018519 Number of successful extensions: 66499 Number of sequences better than 10.0: 147 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62713 Number of HSP's gapped (non-prelim): 3781 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
