ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart18e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15... 42 0.85
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.85
3gb|AF429980.1| Spodoptera frugiperda ribosomal protein S6 mRNA, ... 42 0.85
4dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.85
5gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.10... 42 0.85
6gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, co... 40 3.3
7gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome... 40 3.3
8gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, comple... 40 3.3
9gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, comple... 40 3.3
10gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, co... 40 3.3
11gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-5... 40 3.3
12gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H... 40 3.3
13gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, compl... 40 3.3 
>emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15 on chromosome X Contains the
             3' end of a novel gene, complete sequence
          Length = 71934

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   tccattggtttatgtttgacc 249
             |||||||||||||||||||||
Sbjct: 42126 tccattggtttatgtttgacc 42106
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 73       agcatcacaaagaaatatgtc 93
                |||||||||||||||||||||
Sbjct: 14142991 agcatcacaaagaaatatgtc 14142971
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>gb|AF429980.1| Spodoptera frugiperda ribosomal protein S6 mRNA, complete cds
          Length = 842

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 22  caatgcaaccaccaaaagacttgcgtttc 50
           |||||||||||| || |||||||||||||
Sbjct: 322 caatgcaaccacgaacagacttgcgtttc 294
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>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1102E12
          Length = 155692

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    agcatcacaaagaaatatgtc 93
             |||||||||||||||||||||
Sbjct: 82705 agcatcacaaagaaatatgtc 82685
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>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence
          Length = 205150

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 226   ctctccattggtttatgtttgacct 250
             |||||||||||||||||||| ||||
Sbjct: 38714 ctctccattggtttatgttttacct 38690
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>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence
          Length = 170006

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    ctctccattggtttatgttt 245
              ||||||||||||||||||||
Sbjct: 152564 ctctccattggtttatgttt 152545
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>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence
          Length = 218640

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   agacattcatataaattaca 169
             ||||||||||||||||||||
Sbjct: 17866 agacattcatataaattaca 17885
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>gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, complete sequence
          Length = 191190

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   catataaattacacatgaga 176
             ||||||||||||||||||||
Sbjct: 72888 catataaattacacatgaga 72869
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>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence
          Length = 143546

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    agacattcatataaattaca 169
              ||||||||||||||||||||
Sbjct: 101632 agacattcatataaattaca 101613
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>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence
          Length = 146781

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   ctctccattggtttatgttt 245
             ||||||||||||||||||||
Sbjct: 77129 ctctccattggtttatgttt 77148
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>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence
          Length = 191583

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     taaacatccaggcaatgcaa 29
              ||||||||||||||||||||
Sbjct: 129250 taaacatccaggcaatgcaa 129231
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>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence
          Length = 190773

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   cctgagacattcatataaattaca 169
             |||||||| |||||||||||||||
Sbjct: 17012 cctgagactttcatataaattaca 16989
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>gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, complete sequence
          Length = 205962

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   catataaattacacatgaga 176
             ||||||||||||||||||||
Sbjct: 49124 catataaattacacatgaga 49105


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,583,942
Number of Sequences: 3902068
Number of extensions: 2583942
Number of successful extensions: 49020
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48975
Number of HSP's gapped (non-prelim): 45
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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