>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete
             sequence
          Length = 180516

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 201   cccataatctccatggctctct 222
             ||||||||||||||||||||||
Sbjct: 54311 cccataatctccatggctctct 54290

>gb|AC161865.4| Mus musculus chromosome 19, clone RP23-218F7, complete sequence
          Length = 206019

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 201   cccataatctccatggctctct 222
             ||||||||||||||||||||||
Sbjct: 75079 cccataatctccatggctctct 75100

>gb|DQ157469.1| Pseudomonas putida strain KL47 cym gene cluster, complete sequence;
            cmt gene cluster, complete sequence; enoyl CoA hydratase
            (ech) gene, complete cds; tod gene cluster, complete
            sequence; and sep gene cluster, partial sequence
          Length = 42505

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 417  cccttgagcttggcggcaaat 437
            |||||||||||||||||||||
Sbjct: 2926 cccttgagcttggcggcaaat 2946

>emb|Z99105.2|BSUB0002 Bacillus subtilis complete genome (section 2 of 21): from 213031 to
              415798
          Length = 202768

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 416    gcccttgagcttggcggcaaa 436
              |||||||||||||||||||||
Sbjct: 119863 gcccttgagcttggcggcaaa 119843

>gb|AY111134.1| Zea mays CL31484_1 mRNA sequence
          Length = 533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 332 cacgttctgatagtactgcttgtccaggacgtc 364
           ||||||||  |||||||| ||||||||||||||
Sbjct: 382 cacgttcttgtagtactggttgtccaggacgtc 414

>gb|U24215.1|PPU24215 Pseudomonas putida p-cymene catabolism (cym) and p-cumate catabolism
            (cmt) operons and enol-coenzyme A hydratase gene,
            complete cds
          Length = 24937

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 417  cccttgagcttggcggcaaat 437
            |||||||||||||||||||||
Sbjct: 4892 cccttgagcttggcggcaaat 4912

>dbj|D50453.1| Bacillus subtilis DNA for 25-36 degree region containing the amyE-srfA
             region, complete cds
          Length = 146191

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 416   gcccttgagcttggcggcaaa 436
             |||||||||||||||||||||
Sbjct: 12548 gcccttgagcttggcggcaaa 12528

>dbj|D50098.1| Bacillus subtilis DNA for multidrug transporter, complete cds
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 416 gcccttgagcttggcggcaaa 436
           |||||||||||||||||||||
Sbjct: 763 gcccttgagcttggcggcaaa 783

>gb|AC113325.7| Mus musculus chromosome 1, clone RP23-453H23, complete sequence
          Length = 191225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    atgagaaagccaacaatgac 44
             ||||||||||||||||||||
Sbjct: 33201 atgagaaagccaacaatgac 33182

>gb|AE007299.1| Sinorhizobium meliloti 1021 plasmid pSymA section 105 of 121 of the
             complete plasmid sequence
          Length = 14409

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   gcccttgagcttggcggcaa 435
             ||||||||||||||||||||
Sbjct: 12055 gcccttgagcttggcggcaa 12074

>ref|XM_675514.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7337.2), mRNA
          Length = 3213

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 386  cacgttggtgttgtcgttgc 405
            ||||||||||||||||||||
Sbjct: 2932 cacgttggtgttgtcgttgc 2913

>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7
          Length = 345997

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    gttgccgttgcactggccct 420
              ||||||||||||||||||||
Sbjct: 304804 gttgccgttgcactggccct 304785

>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 388   cgttggtgttgtcgttgccgttgc 411
             ||||| ||||||||||||||||||
Sbjct: 11750 cgttgctgttgtcgttgccgttgc 11773

>gb|AE012021.1| Xanthomonas axonopodis pv. citri str. 306,  section 399 of 469 of the
            complete genome
          Length = 10869

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 416  gcccttgagcttggcggcaa 435
            ||||||||||||||||||||
Sbjct: 1837 gcccttgagcttggcggcaa 1818

>dbj|D84263.2| Hepatitis C virus (isolate VN235) genomic RNA, complete genome
          Length = 9615

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  gtcctggtccacgttggtgt 396
            ||||||||||||||||||||
Sbjct: 3653 gtcctggtccacgttggtgt 3634

>gb|AF356827.1|AF356827 Hepatitis C virus isolate HCV-S1, complete genome
          Length = 9609

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  gtcctggtccacgttggtgt 396
            ||||||||||||||||||||
Sbjct: 3662 gtcctggtccacgttggtgt 3643

>emb|AL116780.1|CNS01DG4 Botrytis cinerea strain T4 cDNA library
          Length = 720

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 391 tggtgttgtcgttgccgttg 410
           ||||||||||||||||||||
Sbjct: 299 tggtgttgtcgttgccgttg 318

>emb|AL115374.1|CNS01CD2 Botrytis cinerea strain T4 cDNA library
          Length = 636

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 391 tggtgttgtcgttgccgttg 410
           ||||||||||||||||||||
Sbjct: 146 tggtgttgtcgttgccgttg 165

>gb|AC093755.2| Homo sapiens BAC clone RP11-55C6 from 4, complete sequence
          Length = 146673

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   tctttcacctcctttattgtttct 284
             |||||||||||||||||| |||||
Sbjct: 55035 tctttcacctcctttattttttct 55012

>gb|AF207769.1|AF207769 Hepatitis C virus strain MD28 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  gtcctggtccacgttggtgt 396
            ||||||||||||||||||||
Sbjct: 3650 gtcctggtccacgttggtgt 3631

>ref|XM_319593.2| Anopheles gambiae str. PEST ENSANGP00000016669
           (ENSANGG00000014180), partial mRNA
          Length = 3090

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 323 gttgtcgatcacgttctgatagtactgcttgt 354
           ||||||||||||| || ||| |||||||||||
Sbjct: 222 gttgtcgatcacgatcagatcgtactgcttgt 191

>ref|XM_552715.1| Anopheles gambiae str. PEST ENSANGP00000029511
           (ENSANGG00000014180), partial mRNA
          Length = 2769

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 323 gttgtcgatcacgttctgatagtactgcttgt 354
           ||||||||||||| || ||| |||||||||||
Sbjct: 231 gttgtcgatcacgatcagatcgtactgcttgt 200

>gb|M32030.1|RABHFMO Rabbit hepatic flavin-containing monooxygenase (hepatic FMO) mRNA,
           complete cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 ttttctttcacctcctttat 277
           ||||||||||||||||||||
Sbjct: 974 ttttctttcacctcctttat 955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,149,325
Number of Sequences: 3902068
Number of extensions: 3149325
Number of successful extensions: 65144
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65111
Number of HSP's gapped (non-prelim): 33
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)