Clone Information

BLAST Search Result

Clone Name	rbart18e07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC016781.6\| Oryza sativa (japonica cultivar-group) clone OSJN...	216	5e-53
2	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	216	5e-53
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	216	5e-53
4	dbj\|AK109347.2\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
5	dbj\|AK102421.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
6	dbj\|AK061364.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
7	gb\|BT017829.1\| Zea mays clone EL01N0508G07.c mRNA sequence	212	8e-52
8	gb\|AY108427.1\| Zea mays PCO132322 mRNA sequence	212	8e-52
9	ref\|XM_462955.1\| Oryza sativa (japonica cultivar-group), predic...	210	3e-51
10	ref\|NM_104861.1\| Arabidopsis thaliana oligosaccharide transporte...	44	0.41
11	dbj\|AK176101.1\| Arabidopsis thaliana mRNA for hypothetical prote...	44	0.41
12	gb\|AC005882.1\|AC005882 Arabidopsis thaliana chromosome I BAC T13...	44	0.41
13	gb\|AC103975.9\| Homo sapiens chromosome 15, clone RP11-1001M11, c...	42	1.6
14	gb\|AC022748.10\| Homo sapiens chromosome 15, clone RP11-160C18, c...	42	1.6
15	gb\|AC157948.5\| Mus musculus BAC clone RP23-197K17 from chromosom...	42	1.6
16	gb\|AC149283.2\| Mus musculus BAC clone RP23-233O21 from 7, comple...	42	1.6
17	ref\|NM_101029.1\| Arabidopsis thaliana oligosaccharide transporte...	40	6.5
18	ref\|XM_655563.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	6.5
19	gb\|AC125331.4\| Mus musculus chromosome 7 clone RP23-11L1, comple...	40	6.5
20	gb\|AC122245.5\| Mus musculus BAC clone RP23-151P21 from 18, compl...	40	6.5
21	gb\|AC122828.3\| Mus musculus BAC clone RP23-215B8 from 13, comple...	40	6.5
22	gb\|AC087237.14\| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C...	40	6.5
23	emb\|BX294025.1\|NCB16M17 Neurospora crassa DNA linkage group V BA...	40	6.5
24	gb\|AC011661.5\|AC011661 Genomic sequence for Arabidopsis thaliana...	40	6.5
25	emb\|AL805923.6\| Mouse DNA sequence from clone RP23-65B16 on chro...	40	6.5
26	gb\|AC159189.2\| Mus musculus BAC clone RP24-159L17 from chromosom...	40	6.5

>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
             sequence
          Length = 151269

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                         
Query: 233   catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
             ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 94535 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 94594

                                                                         
Query: 293   caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
             ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 94595 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 94654

                                                                         
Query: 353   tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
              |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 94655 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 94714

                                                                      
Query: 413   gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
              |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 94715 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 94771

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                            
Query: 233      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20176451 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20176510

                                                                            
Query: 293      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20176511 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20176570

                                                                            
Query: 353      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20176571 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20176630

                                                                         
Query: 413      gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
                 |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 20176631 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 20176687

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Plus

                                                                            
Query: 233      catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
                ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 20169478 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 20169537

                                                                            
Query: 293      caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
                ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 20169538 caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 20169597

                                                                            
Query: 353      tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
                 |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 20169598 acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 20169657

                                                                         
Query: 413      gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
                 |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 20169658 ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 20169714

to top

>dbj|AK109347.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G06, full
            insert sequence
          Length = 1273

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 233  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1032 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 973

                                                                        
Query: 293  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 972  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 913

                                                                        
Query: 353  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 912  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 853

                                                                     
Query: 413  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 852  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 796

to top

>dbj|AK102421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093D18, full
            insert sequence
          Length = 1398

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 233  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1052 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 993

                                                                        
Query: 293  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 992  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 933

                                                                        
Query: 353  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 932  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 873

                                                                     
Query: 413  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 872  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 816

to top

>dbj|AK061364.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D03, full
            insert sequence
          Length = 1328

 Score =  216 bits (109), Expect = 5e-53
 Identities = 205/237 (86%)
 Strand = Plus / Minus

                                                                        
Query: 233  catttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatc 292
            ||||||||||||||| || |||||||||||||||||||| || |||||||||||||||||
Sbjct: 1047 catttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatc 988

                                                                        
Query: 293  caggtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaa 352
            ||    || ||||||| | |||||||||||||| ||   |||||| |||||||| | |||
Sbjct: 987  caaaagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaa 928

                                                                        
Query: 353  tcgctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcag 412
             |||||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| ||
Sbjct: 927  acgctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgag 868

                                                                     
Query: 413  gcccacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
             |||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 867  ccccacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 811

to top

>gb|BT017829.1| Zea mays clone EL01N0508G07.c mRNA sequence
          Length = 1374

 Score =  212 bits (107), Expect = 8e-52
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                        
Query: 238  acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 297
            |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 1055 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 996

                                                                        
Query: 298  aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 357
            | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 995  agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 936

                                                                        
Query: 358  gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 417
            | ||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 935  gcgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 876

                                                                   
Query: 418  cgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 472
            |||| ||||||||||| || || | ||||||||| || || ||||||||||||||
Sbjct: 875  cgagtgtgtacaagaacccgacagtaaacccctcagcccccagctgcatccctga 821

to top

>gb|AY108427.1| Zea mays PCO132322 mRNA sequence
          Length = 860

 Score =  212 bits (107), Expect = 8e-52
 Identities = 203/235 (86%)
 Strand = Plus / Minus

                                                                       
Query: 238 acctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccaggt 297
           |||||||||| |||||  |||||||||||||||| || ||||||||||||||||| | ||
Sbjct: 513 acctccagctgctcgggaagaaggtatgaatgctatagccagtcttccagttatctaagt 454

                                                                       
Query: 298 aaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcgct 357
           | | ||||||||| || ||||||||||||| | ||||||| || ||||| ||||  ||||
Sbjct: 453 agatcaccttcctaacagcccaccacccgaccaccatgacagcgagcatcgcaaggcgct 394

                                                                       
Query: 358 gtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggccca 417
           ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||
Sbjct: 393 gtgtctgcaggctctccaccttcaccaacaagtgtgtcaccacagcgatcatgagaccca 334

                                                                  
Query: 418 cgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccctga 472
           |||| ||||||||||| || || | ||||||||| || || | ||||||||||||
Sbjct: 333 cgagtgtgtacaagaacccgacagtaaacccctcagcccccaactgcatccctga 279

to top

>ref|XM_462955.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  210 bits (106), Expect = 3e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                        
Query: 236  ttacctccagctactcggccagaaggtatgaatgctgtacccagtcttccagttatccag 295
            |||||||||||| || |||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 1011 ttacctccagctgctgggccagaaggtatgaatgctatatccagtcttccagttatccaa 952

                                                                        
Query: 296  gtaaaccaccttcctgactgcccaccacccgatcgccatgactgccagcattgcaaatcg 355
               || ||||||| | |||||||||||||| ||   |||||| |||||||| | ||| ||
Sbjct: 951  aagaatcaccttcttcactgcccaccacccaattatcatgaccgccagcatcgtaaaacg 892

                                                                        
Query: 356  ctgtgtctgcaggctctccaccttcaccagcaagtgtgtgaccacagctatcatcaggcc 415
            |||  ||||||||||||||||| |||||||||||||||| ||||  || ||||| || ||
Sbjct: 891  ctggatctgcaggctctccaccctcaccagcaagtgtgtcaccatggcgatcatgagccc 832

                                                                  
Query: 416  cacgagggtgtacaagaaaccaaccgcaaacccctccgcgccgagctgcatccc 469
            |||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 831  cacgagagtgtacaagaacccaaccgcaaaaccctcggcgccgagctgcatccc 778

to top

>ref|NM_104861.1| Arabidopsis thaliana oligosaccharide transporter AT1G61790 mRNA,
            complete cds
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 276  ccagtcttccagttatccaggtaaac 301
            ||||||||||||||||||| ||||||
Sbjct: 1001 ccagtcttccagttatccaagtaaac 976

to top

>dbj|AK176101.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-88-K11
          Length = 345

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 276 ccagtcttccagttatccaggtaaac 301
           ||||||||||||||||||| ||||||
Sbjct: 77  ccagtcttccagttatccaagtaaac 52

to top

>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 276   ccagtcttccagttatccaggtaaac 301
             ||||||||||||||||||| ||||||
Sbjct: 67285 ccagtcttccagttatccaagtaaac 67260

to top

>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence
          Length = 213676

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   aaaccaccttcctgactgccc 318
             |||||||||||||||||||||
Sbjct: 22849 aaaccaccttcctgactgccc 22869

to top

>gb|AC022748.10| Homo sapiens chromosome 15, clone RP11-160C18, complete sequence
          Length = 163642

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 298    aaaccaccttcctgactgccc 318
              |||||||||||||||||||||
Sbjct: 120526 aaaccaccttcctgactgccc 120506

to top

>gb|AC157948.5| Mus musculus BAC clone RP23-197K17 from chromosome 7, complete
            sequence
          Length = 201846

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 368  gctctccaccttcaccagcaagtgt 392
            |||||| ||||||||||||||||||
Sbjct: 2447 gctctctaccttcaccagcaagtgt 2423

to top

>gb|AC149283.2| Mus musculus BAC clone RP23-233O21 from 7, complete sequence
          Length = 223763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 368    gctctccaccttcaccagcaagtgt 392
              |||||| ||||||||||||||||||
Sbjct: 197849 gctctctaccttcaccagcaagtgt 197873

to top

>ref|NM_101029.1| Arabidopsis thaliana oligosaccharide transporter AT1G11560 mRNA,
           complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 276 ccagtcttccagttatccaggtaaaccaccttcctgactgccca 319
           ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 989 ccagtcttccaattatccaagtaaacaactttcctcacagccca 946

to top

>ref|XM_655563.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3051.2), mRNA
          Length = 2367

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   ataaaatgactcggttctct 76
            ||||||||||||||||||||
Sbjct: 1584 ataaaatgactcggttctct 1565

to top

>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    ccaccttcctgactgcccac 320
              ||||||||||||||||||||
Sbjct: 121813 ccaccttcctgactgcccac 121832

to top

>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence
          Length = 191988

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    cctctgcaacaaaggaaaga 208
              ||||||||||||||||||||
Sbjct: 146179 cctctgcaacaaaggaaaga 146160

to top

>gb|AC122828.3| Mus musculus BAC clone RP23-215B8 from 13, complete sequence
          Length = 198604

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    tgcaacaaaggaaagaagca 212
              ||||||||||||||||||||
Sbjct: 129467 tgcaacaaaggaaagaagca 129448

to top

>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 382    ccagcaagtgtgtgaccacagcta 405
              ||||||||||||| ||||||||||
Sbjct: 112713 ccagcaagtgtgtcaccacagcta 112736

to top

>emb|BX294025.1|NCB16M17 Neurospora crassa DNA linkage group V BAC clone B16M17
          Length = 78402

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 339   gccagcattgcaaatcgctgtgtc 362
             ||||||||||||| ||||||||||
Sbjct: 44258 gccagcattgcaagtcgctgtgtc 44281

to top

>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
             complete sequence
          Length = 84797

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 276   ccagtcttccagttatccaggtaaaccaccttcctgactgccca 319
             ||||||||||| ||||||| |||||| || ||||| || |||||
Sbjct: 67360 ccagtcttccaattatccaagtaaacaactttcctcacagccca 67317

to top

>emb|AL805923.6| Mouse DNA sequence from clone RP23-65B16 on chromosome 4, complete
              sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    cacagctatcatcaggccca 417
              ||||||||||||||||||||
Sbjct: 100630 cacagctatcatcaggccca 100611

to top

>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    acagctatcatcaggcccac 418
              ||||||||||||||||||||
Sbjct: 109099 acagctatcatcaggcccac 109080


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,147,448
Number of Sequences: 3902068
Number of extensions: 4147448
Number of successful extensions: 68202
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68120
Number of HSP's gapped (non-prelim): 75
length of query: 478
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 456
effective length of database: 17,147,199,772
effective search space: 7819123096032
effective search space used: 7819123096032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result